Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC729856 Sequence: fasta or formatted (155aa) NCBI GI: 169162126
Description:

PREDICTED: similar to hCG1981735

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [155aa] PREDICTED: similar to hCG1981735
alt prot [155aa] PREDICTED: similar to hCG1981735
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          8           1
 C cysteine            4.5          7           2
 D aspartate           3.2          5           1
 E glutamate           6.5         10           2
 F phenylalanine       1.9          3           1
 G glycine            10.3         16           1
 H histidine           1.9          3           1
 I isoleucine          7.7         12           1
 K lysine              7.1         11           2
 L leucine             8.4         13           2
 M methionine          3.2          5           1
 N asparagine          3.2          5           1
 P proline             7.1         11           2
 Q glutamine           4.5          7           1
 R arginine            1.9          3           1
 S serine              7.7         12           2
 T threonine           5.2          8           1
 V valine              6.5         10           1
 W tryptophan          1.3          2           1
 Y tyrosine            2.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1981735 
LOC729856             1.000   PREDICTED: similar to hCG1981735 
LOC729856             0.997   PREDICTED: similar to hCG1981735 
LOC100293909          0.440   PREDICTED: similar to eukaryotic translation elonga...
EEF1A2                0.440   eukaryotic translation elongation factor 1 alpha 2 [H...
EEF1A1                0.433   eukaryotic translation elongation factor 1 alpha 1 [H...
GSPT1                 0.161   G1 to S phase transition 1 isoform 3 
GSPT1                 0.161   G1 to S phase transition 1 isoform 2 
GSPT1                 0.161   G1 to S phase transition 1 isoform 1 
GSPT2                 0.151   peptide chain release factor 3 
HBS1L                 0.148   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.148   Hsp70 subfamily B suppressor 1-like protein isoform 1...
TUFM                  0.050   Tu translation elongation factor, mitochondrial prec...
BCL11B                0.017   B-cell CLL/lymphoma 11B isoform 1 
ANKRD30A              0.013   ankyrin repeat domain 30A 
EIF2S3                0.010   eukaryotic translation initiation factor 2, subunit 3...
PDCD2L                0.010   programmed cell death 2-like 
LOC100291890          0.007   PREDICTED: hypothetical protein XP_002344521 
LOC100289901          0.007   PREDICTED: hypothetical protein XP_002347167 
LOC100288618          0.007   PREDICTED: hypothetical protein XP_002344285 
RAD54L                0.007   RAD54-like protein 
RAD54L                0.007   RAD54-like protein 
KIAA1383              0.007   hypothetical protein LOC54627 
NLRC5                 0.007   nucleotide-binding oligomerization domains 27 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press