Guide to the Human Genome
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Name: LOC643563 Sequence: fasta or formatted (105aa) NCBI GI: 169217153
Description:

PREDICTED: similar to EEF1A1 protein

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [105aa] PREDICTED: similar to EEF1A1 protein
alt mRNA [105aa] PREDICTED: similar to EEF1A1 protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          6           2
 C cysteine            1.9          2           1
 D aspartate           3.8          4           1
 E glutamate           7.6          8           1
 F phenylalanine       3.8          4           2
 G glycine             6.7          7           1
 H histidine           3.8          4           1
 I isoleucine          6.7          7           1
 K lysine             11.4         12           1
 L leucine             9.5         10           3
 M methionine          1.9          2           1
 N asparagine          3.8          4           1
 P proline             3.8          4           1
 Q glutamine           1.9          2           1
 R arginine            4.8          5           1
 S serine              5.7          6           1
 T threonine           7.6          8           2
 V valine              3.8          4           1
 W tryptophan          2.9          3           1
 Y tyrosine            2.9          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to EEF1A1 protein 
LOC643563             1.000   PREDICTED: similar to EEF1A1 protein 
LOC643563             1.000   PREDICTED: similar to EEF1A1 protein 
EEF1A1                0.510   eukaryotic translation elongation factor 1 alpha 1 [H...
LOC100293909          0.505   PREDICTED: similar to eukaryotic translation elonga...
EEF1A2                0.505   eukaryotic translation elongation factor 1 alpha 2 [H...
HBS1L                 0.214   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.214   Hsp70 subfamily B suppressor 1-like protein isoform 1...
GSPT1                 0.168   G1 to S phase transition 1 isoform 3 
GSPT1                 0.168   G1 to S phase transition 1 isoform 2 
GSPT1                 0.168   G1 to S phase transition 1 isoform 1 
GSPT2                 0.163   peptide chain release factor 3 
TUFM                  0.026   Tu translation elongation factor, mitochondrial prec...
RSF1                  0.015   remodeling and spacing factor 1 
SYNE1                 0.015   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.015   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.015   spectrin repeat containing, nuclear envelope 1 isof...
ABCD1                 0.010   ATP-binding cassette, sub-family D (ALD), member 1 [H...
DOCK4                 0.010   dedicator of cytokinesis 4 
RBBP9                 0.005   retinoblastoma binding protein 9 
ABCD2                 0.005   ATP-binding cassette, sub-family D, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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