Guide to the Human Genome
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Name: EHD3 Sequence: fasta or formatted (535aa) NCBI GI: 7657056
Description:

EH-domain containing 3

Referenced in:

Additional Membrane Functions
Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         35           2
 C cysteine            0.2          1           1
 D aspartate           7.5         40           3
 E glutamate           7.5         40           2
 F phenylalanine       5.0         27           1
 G glycine             6.4         34           2
 H histidine           2.6         14           1
 I isoleucine          6.2         33           2
 K lysine              8.2         44           3
 L leucine            11.0         59           2
 M methionine          3.0         16           1
 N asparagine          3.7         20           2
 P proline             5.6         30           2
 Q glutamine           3.9         21           2
 R arginine            5.4         29           3
 S serine              5.0         27           2
 T threonine           2.4         13           2
 V valine              6.4         34           2
 W tryptophan          1.1          6           1
 Y tyrosine            2.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EH-domain containing 3 
EHD1                  0.891   EH-domain containing 1 
EHD4                  0.762   EH-domain containing 4 
EHD2                  0.719   EH-domain containing 2 
SRL                   0.187   sarcalumenin 
EPS15                 0.071   epidermal growth factor receptor pathway substrate 15...
EPS15L1               0.071   epidermal growth factor receptor pathway substrate 1...
ITSN1                 0.052   intersectin 1 isoform ITSN-s 
ITSN1                 0.052   intersectin 1 isoform ITSN-l 
ITSN2                 0.048   intersectin 2 isoform 3 
ITSN2                 0.048   intersectin 2 isoform 1 
ITSN2                 0.048   intersectin 2 isoform 2 
REPS1                 0.044   RALBP1 associated Eps domain containing 1 isoform a...
REPS1                 0.044   RALBP1 associated Eps domain containing 1 isoform b...
REPS2                 0.028   RALBP1 associated Eps domain containing 2 isoform 2...
REPS2                 0.028   RALBP1 associated Eps domain containing 2 isoform 1...
CAGE1                 0.008   cancer antigen 1 
RNF40                 0.008   ring finger protein 40 
HNRNPA3               0.007   heterogeneous nuclear ribonucleoprotein A3 
NOL9                  0.007   nucleolar protein 9 
DRG2                  0.006   developmentally regulated GTP binding protein 2 [Homo...
NUCB1                 0.006   nucleobindin 1 
APOB                  0.005   apolipoprotein B precursor 
ABCE1                 0.005   ATP-binding cassette, sub-family E, member 1 
ABCE1                 0.005   ATP-binding cassette, sub-family E, member 1 
MAX                   0.005   MAX protein isoform c 
ZC3H13                0.005   zinc finger CCCH-type containing 13 
RRBP1                 0.004   ribosome binding protein 1 
RRBP1                 0.004   ribosome binding protein 1 
MAX                   0.004   MAX protein isoform e 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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