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Search of human proteins with 190684679
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190684679 hypothetical protein LOC126074 [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190684679 hypothetical protein LOC126074 [Homo sapiens] 475 e-134
gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens] 38 0.006
gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens] 38 0.006
gi|108773784 ATP-binding cassette, sub-family E, member 1 [Homo ... 32 0.35
gi|108773782 ATP-binding cassette, sub-family E, member 1 [Homo ... 32 0.35
gi|239747867 PREDICTED: hypothetical protein [Homo sapiens] 32 0.45
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 32 0.45
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens] 32 0.45
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 31 0.77
gi|21237725 phosphoinositide-3-kinase, catalytic, gamma polypept... 31 0.77
gi|31881687 replication factor C 4 [Homo sapiens] 31 0.77
gi|4506491 replication factor C 4 [Homo sapiens] 31 0.77
gi|21327685 YME1-like 1 isoform 1 [Homo sapiens] 31 1.0
gi|7657689 YME1-like 1 isoform 3 [Homo sapiens] 31 1.0
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 31 1.0
gi|34304360 nephrocystin 3 [Homo sapiens] 30 1.3
gi|4506753 RuvB-like 1 [Homo sapiens] 30 1.3
gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens] 30 1.7
gi|5031905 MyoD family inhibitor [Homo sapiens] 30 1.7
gi|134031945 SCO-spondin [Homo sapiens] 30 2.2
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ... 30 2.2
gi|222352143 TBC1 domain family, member 2 [Homo sapiens] 29 2.9
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 29 2.9
gi|17402886 HEAT-like repeat-containing protein isoform 1 [Homo ... 29 2.9
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 29 2.9
gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Hom... 29 2.9
gi|62420888 dipeptidyl peptidase 7 preproprotein [Homo sapiens] 29 3.8
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 29 3.8
gi|115583657 hypothetical protein LOC150368 [Homo sapiens] 29 3.8
gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens] 29 3.8
>gi|190684679 hypothetical protein LOC126074 [Homo sapiens]
Length = 229
Score = 475 bits (1223), Expect = e-134
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MPAAGPPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMR 60
MPAAGPPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMR
Sbjct: 1 MPAAGPPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMR 60
Query: 61 LQKIRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLD 120
LQKIRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLD
Sbjct: 61 LQKIRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLD 120
Query: 121 TAAHFSHRLGPGRDCGLMVALQTQEEAGSGDVLHLALLQRYFPAQCWLQPDAPGPGEHGL 180
TAAHFSHRLGPGRDCGLMVALQTQEEAGSGDVLHLALLQRYFPAQCWLQPDAPGPGEHGL
Sbjct: 121 TAAHFSHRLGPGRDCGLMVALQTQEEAGSGDVLHLALLQRYFPAQCWLQPDAPGPGEHGL 180
Query: 181 RACLEPGGLGPRTEWWVTFRSDGEMMIAPWPTQAGDPSSGKGSSSGGQP 229
RACLEPGGLGPRTEWWVTFRSDGEMMIAPWPTQAGDPSSGKGSSSGGQP
Sbjct: 181 RACLEPGGLGPRTEWWVTFRSDGEMMIAPWPTQAGDPSSGKGSSSGGQP 229
>gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens]
Length = 1029
Score = 38.1 bits (87), Expect = 0.006
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 14 PGSGKTALLFAAALEAAGEG---QGPVLFLTRRPLQSMPRGTGTTLDPM----RLQKIRF 66
PGSG+ A+ L+ +G Q PVL + LQ + GTTL P+ +
Sbjct: 107 PGSGEEAVALVEELQKDLDGPAIQVPVLVKDQDTLQKVVSAPGTTLPPVLPGSHIAAEIC 166
Query: 67 QYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLDTA 122
+PP+ F L H++P P S L + E+P Q L+AL+L TA
Sbjct: 167 PHPPTDLVAFNLQDPQHDSPAPEASALSQE-------ENPRNQ----LMALMLLTA 211
>gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens]
Length = 267
Score = 38.1 bits (87), Expect = 0.006
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 14 PGSGKTALLFAAALEAAGEG---QGPVLFLTRRPLQSMPRGTGTTLDPM----RLQKIRF 66
PGSG+ A+ L+ +G Q PVL + LQ + GTTL P+ +
Sbjct: 107 PGSGEEAVALVEELQKDLDGPAIQVPVLVKDQDTLQKVVSAPGTTLPPVLPGSHIAAEIC 166
Query: 67 QYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLDTA 122
+PP+ F L H++P P S L + E+P Q L+AL+L TA
Sbjct: 167 PHPPTDLVAFNLQDPQHDSPAPEASALSQE-------ENPRNQ----LMALMLLTA 211
>gi|108773784 ATP-binding cassette, sub-family E, member 1 [Homo
sapiens]
Length = 599
Score = 32.3 bits (72), Expect = 0.35
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 8 LLLLGTPGSGKTALL--FAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMRLQKIR 65
+++LG G+GKT + A L+ G+ PVL ++ +P + P+ TG+ + +KIR
Sbjct: 375 MVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLH-EKIR 433
Query: 66 FQY 68
Y
Sbjct: 434 DAY 436
>gi|108773782 ATP-binding cassette, sub-family E, member 1 [Homo
sapiens]
Length = 599
Score = 32.3 bits (72), Expect = 0.35
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 8 LLLLGTPGSGKTALL--FAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMRLQKIR 65
+++LG G+GKT + A L+ G+ PVL ++ +P + P+ TG+ + +KIR
Sbjct: 375 MVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLH-EKIR 433
Query: 66 FQY 68
Y
Sbjct: 434 DAY 436
>gi|239747867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 32.0 bits (71), Expect = 0.45
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 85 APGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLDTAAHFSHRLGPGRDCGLMVALQTQ 144
+PG LL GL P+P AL + H R+ G + +L+ Q
Sbjct: 263 SPGARGPLLPPAGLSPPRRCQPQPGCLWSPCALAAPPSPHLLFRVLEGDHQHHITSLELQ 322
Query: 145 EEAGSGDVLHLALLQRYFPAQCWLQPDAPGP--GEHG-LRACLE 185
SG V+ L LL + + W Q APGP HG + +C E
Sbjct: 323 LVCVSGRVVVLGLLWAHLEHETWGQVQAPGPTAALHGAIHSCWE 366
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 32.0 bits (71), Expect = 0.45
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 8 LLLLGTPGSGKTALLFAAALEAAGEGQGPVLF-LTRRPLQSMPRGTGTTLDPMRLQKIRF 66
+L++G PG+GKT L A A E G F ++ L S RG L + + RF
Sbjct: 244 VLMVGPPGTGKTMLAKAVATEC-----GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 298
Query: 67 QYPPSTRELFRL--LCS------AHEAPGPAPSLLL--LDGLEEYLAEDPEPQEAAYLIA 116
Y P+T + + +CS HEA S LL +DG+ L E+ +P + ++A
Sbjct: 299 -YAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGAL-ENDDPSKMVMVLA 356
>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 32.0 bits (71), Expect = 0.45
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 8 LLLLGTPGSGKTALLFAAALEAAGEGQGPVLF-LTRRPLQSMPRGTGTTLDPMRLQKIRF 66
+L++G PG+GKT L A A E G F ++ L S RG L + + RF
Sbjct: 244 VLMVGPPGTGKTMLAKAVATEC-----GTTFFNVSSSTLTSKYRGESEKLVRLLFEMARF 298
Query: 67 QYPPSTRELFRL--LCS------AHEAPGPAPSLLL--LDGLEEYLAEDPEPQEAAYLIA 116
Y P+T + + +CS HEA S LL +DG+ L E+ +P + ++A
Sbjct: 299 -YAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGAL-ENDDPSKMVMVLA 356
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 31.2 bits (69), Expect = 0.77
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 28/116 (24%)
Query: 8 LLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQ-SMPRGTGTTLDPMRLQKIRF 66
+LL G PG GKT L+ A A EA E +L ++ LQ S P G T + +R
Sbjct: 237 VLLAGPPGVGKTQLVRAVAREAGAE----LLAVSAPALQGSRP---GETEENVR------ 283
Query: 67 QYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLEEYL----AEDPEPQEAAYLIALL 118
R+ A E PSLL LD ++ + PE + A ++ LL
Sbjct: 284 ----------RVFQRARELASRGPSLLFLDEMDALCPQRGSRAPESRVVAQVLTLL 329
>gi|21237725 phosphoinositide-3-kinase, catalytic, gamma polypeptide
[Homo sapiens]
Length = 1102
Score = 31.2 bits (69), Expect = 0.77
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 42 RRPLQSMPRGTGTTLDPMRLQKIRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDG---L 98
RR + PR +L M L I F P S R+ P +LL + G +
Sbjct: 18 RRRRRMKPRSAAASLSSMELIPIEFVLPTSQRK----------CKSPETALLHVAGHGNV 67
Query: 99 EEYLAEDPEPQEAAYLIALLLDTAAHFSHRLGP 131
E+ A+ +L AL AA F HRLGP
Sbjct: 68 EQMKAQ-------VWLRALETSVAADFYHRLGP 93
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 31.2 bits (69), Expect = 0.77
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 6 PPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTR 42
P LL G PG+GKT+ + AAA E GP LF R
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELF----GPELFRLR 104
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 31.2 bits (69), Expect = 0.77
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 6 PPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTR 42
P LL G PG+GKT+ + AAA E GP LF R
Sbjct: 72 PNLLFYGPPGTGKTSTILAAARELF----GPELFRLR 104
>gi|21327685 YME1-like 1 isoform 1 [Homo sapiens]
Length = 773
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Query: 8 LLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMRLQKIRFQ 67
+LL+G PG+GKT L A AGE P + + M G G +
Sbjct: 375 ILLVGPPGTGKTLL----ARAVAGEADVPFYYASGSEFDEMFVGVGAS------------ 418
Query: 68 YPPSTRELFRLLCSAHEAPGPAPSLLLLDGLE 99
R LFR EA AP ++ +D L+
Sbjct: 419 ---RIRNLFR------EAKANAPCVIFIDELD 441
>gi|7657689 YME1-like 1 isoform 3 [Homo sapiens]
Length = 716
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 25/92 (27%)
Query: 8 LLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMRLQKIRFQ 67
+LL+G PG+GKT L A AGE P + + M G G +
Sbjct: 318 ILLVGPPGTGKTLL----ARAVAGEADVPFYYASGSEFDEMFVGVGAS------------ 361
Query: 68 YPPSTRELFRLLCSAHEAPGPAPSLLLLDGLE 99
R LFR EA AP ++ +D L+
Sbjct: 362 ---RIRNLFR------EAKANAPCVIFIDELD 384
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 30.8 bits (68), Expect = 1.0
Identities = 43/161 (26%), Positives = 58/161 (36%), Gaps = 21/161 (13%)
Query: 88 PAPSLLLL----DGLEEYLAEDPEPQEAAYLIALLLDTAAHFSHRLGPGRDCGLMVALQT 143
PAP+ L L GL L+E+P P+ + L+ L + LGPGR L +
Sbjct: 225 PAPATLRLRAEEPGLRRQLSEEPSPRSSPLLLRRLSVEESGLGLGLGPGRSPHLRRLSRA 284
Query: 144 QEEAGSGDV--LHLALLQRYFPAQC----WLQPDAPGPGEHGLRA-CLEPGGLGPRTEW- 195
S D L A P + WL A G H L L GL + ++
Sbjct: 285 GPRLLSPDAEELPAAPPPSAVPLEPSEHEWLVRTAGGRWTHQLHGLLLRDRGLAAKRDFM 344
Query: 196 -------WVTFRSDGEM--MIAPWPTQAGDPSSGKGSSSGG 227
W DGEM + ++G P S GG
Sbjct: 345 SGFTALHWAAKSGDGEMALQLVEVARRSGAPVDVNARSHGG 385
>gi|34304360 nephrocystin 3 [Homo sapiens]
Length = 1330
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 2 PAAGPPLLLLGTPGSGKTALL 22
PA PPLL+ G PGSGK+ LL
Sbjct: 520 PAPIPPLLVSGGPGSGKSLLL 540
>gi|4506753 RuvB-like 1 [Homo sapiens]
Length = 456
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 4 AGPPLLLLGTPGSGKTALLFAAALE 28
AG +LL G PG+GKTAL A A E
Sbjct: 62 AGRAVLLAGPPGTGKTALALAIAQE 86
>gi|33350932 cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]
Length = 4646
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 7 PLLLLGTPGSGKTALLFAA 25
PL+L G PGSGKT LF+A
Sbjct: 2590 PLVLCGPPGSGKTMTLFSA 2608
>gi|5031905 MyoD family inhibitor [Homo sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 85 APGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLDTAAHFSHRLGPGRDCGL 137
APGPA +L LL GL E + P EAA L + A GPG GL
Sbjct: 22 APGPAQTLSLLPGL-EVVTGSTHPAEAAPEEGSLEEAATPMPQGNGPGIPQGL 73
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 29.6 bits (65), Expect = 2.2
Identities = 38/161 (23%), Positives = 51/161 (31%), Gaps = 26/161 (16%)
Query: 86 PGPAPSLLLLDGLEEYLAEDPEPQEAAYLIALLLDTAAHFSHRLGPGRDCGLMVALQTQE 145
P P + ++G E P P+ D H R PG C L +
Sbjct: 3305 PCPVTNCTAIEGAEYSPCGPPCPRSC--------DDLVHCVWRCQPGCYCPPGQVLSSNG 3356
Query: 146 ----EAGSGDVLHLALLQRYFPAQCWLQPDA-------PGPGEHGLRACLEPGGLGPRTE 194
+ G L L QR+ P +PD G C PGG P +E
Sbjct: 3357 AICVQPGHCSCLDLLTGQRHHPGARLARPDGCNHCTCLEGRLNCTDLPCPVPGGWCPWSE 3416
Query: 195 WWVTF-------RSDGEMMIAPWPTQAGDPSSGKGSSSGGQ 228
W + RS P P G P +G+ +G Q
Sbjct: 3417 WTMCSQPCRGQTRSRSRACACPTPQHGGAPCTGEAGEAGAQ 3457
>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
[Homo sapiens]
Length = 2649
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 6 PPLLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLT 41
PPLL+ G G+GKT L A+LE + VL T
Sbjct: 538 PPLLIYGPFGTGKTYTLAMASLEVIRRPETKVLICT 573
>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
Length = 917
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 147 AGSGDVLHLALLQRYFPAQCWLQPDAPGPGEHGLRACLEP 186
AG+G VLHL L Q + +L P PG G+ A L+P
Sbjct: 160 AGNGPVLHLELGQEEAELEEFLCPVKTPPGLVGVAAALQP 199
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 6 PPLLLLGTPGSGKTALLFAAALEAAGEGQGPVL 38
P L+ G PG+GKT A +G GPVL
Sbjct: 486 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVL 518
>gi|17402886 HEAT-like repeat-containing protein isoform 1 [Homo
sapiens]
Length = 873
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 15 GSGKTALLFAA--ALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDP 58
G GKT++L A + P F PL S RGTG ++DP
Sbjct: 806 GLGKTSVLSLADDSFRTRNASSVPSSFSPNTPLPSTSRGTGNSVDP 851
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 29.3 bits (64), Expect = 2.9
Identities = 38/113 (33%), Positives = 44/113 (38%), Gaps = 27/113 (23%)
Query: 2 PAAGPPLLLLGTPGSGKTALLFAAA----LEAAGEGQGPVLFLTRRPLQSMPRGTGTTLD 57
PAAG PL L P S A AAA L A GE P LQ RG + D
Sbjct: 323 PAAGAPLPRLPPPTSESAATGNAAAREGGLSAGGEPPAPPTPPATSALQQGLRGLHLSSD 382
Query: 58 PM----RLQK-----IRFQYPPSTRELFRLLCSAHEAPGP-----APSLLLLD 96
+ RL++ I+ Y PS R + PGP AP L LD
Sbjct: 383 RLQDTNRLKRSFSLDIKSAYAPSRRP---------DGPGPPDPGEAPKLCKLD 426
>gi|14917111 adaptor-related protein complex 4, mu 1 subunit [Homo
sapiens]
Length = 453
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 170 PDAPGPGEHGLRACLEPGGLGP 191
P PGP HGL P GLGP
Sbjct: 383 PGPPGPPSHGLSTSASPLGLGP 404
>gi|62420888 dipeptidyl peptidase 7 preproprotein [Homo sapiens]
Length = 492
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 170 PDAPGPGEHGLRACLEPGGLGPRTEWWVTFRSDGEMMIA 208
PD P E R CL+ G+ PR +W +T G++ A
Sbjct: 369 PDLPFTDELRQRYCLDTWGVWPRPDWLLTSFWGGDLRAA 407
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 28.9 bits (63), Expect = 3.8
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 112 AYLIALLLDTAAHFSHRLGPGRDCGLMVALQTQEEAGSGDVLHLALLQRYFPAQCWLQPD 171
AY A+L AA + GPG VA Q Q A V L PA P
Sbjct: 245 AYTTAILQHQAALLAAAQGPGLGPVAAVAAQMQHVAAFSLVAAPLL-----PAAAANSPP 299
Query: 172 APGPGE-HGLRACLEPGGLGPRT 193
GPG GL A + G GP T
Sbjct: 300 GSGPGTLPGLPAPIGVNGFGPLT 322
>gi|115583657 hypothetical protein LOC150368 [Homo sapiens]
Length = 259
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 78 LLCSAHEAPGPAP-SLLLLDGLEEYLAEDPEPQEAAYLI 115
LL S G AP SL++L+G LAE P P+E A+ I
Sbjct: 51 LLFSFESREGRAPLSLVVLEGCTVELAEAPVPEEFAFAI 89
>gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]
Length = 440
Score = 28.9 bits (63), Expect = 3.8
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 27/96 (28%)
Query: 6 PP--LLLLGTPGSGKTALLFAAALEAAGEGQGPVLFLTRRPLQSMPRGTGTTLDPMRLQK 63
PP ++L G PG+GKT L A A Q FL R G+ L +QK
Sbjct: 218 PPKGVILYGPPGTGKTLLAKAVA------NQTSATFL---------RVVGSEL----IQK 258
Query: 64 IRFQYPPSTRELFRLLCSAHEAPGPAPSLLLLDGLE 99
P RELFR+ A APS++ +D ++
Sbjct: 259 YLGDGPKLVRELFRV------AEEHAPSIVFIDEID 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,255,028
Number of Sequences: 37866
Number of extensions: 713328
Number of successful extensions: 2000
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1969
Number of HSP's gapped (non-prelim): 59
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.