Guide to the Human Genome
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Name: ABCE1 Sequence: fasta or formatted (599aa) NCBI GI: 108773784
Description:

ATP-binding cassette, sub-family E, member 1

Referenced in:

ATP-binding Cassette Proteins
RNases and RNA Stability
Conservation of Stress Responses

Other entries for this name:
alt mRNA [599aa] ATP-binding cassette, sub-family E, member 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         37           2
 C cysteine            2.8         17           2
 D aspartate           6.0         36           2
 E glutamate           6.2         37           3
 F phenylalanine       4.0         24           2
 G glycine             6.0         36           2
 H histidine           1.5          9           1
 I isoleucine          7.3         44           2
 K lysine              8.8         53           3
 L leucine             9.5         57           2
 M methionine          2.5         15           1
 N asparagine          3.8         23           2
 P proline             5.2         31           2
 Q glutamine           4.0         24           2
 R arginine            4.8         29           2
 S serine              5.0         30           2
 T threonine           5.0         30           2
 V valine              7.5         45           2
 W tryptophan          0.3          2           1
 Y tyrosine            3.3         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family E, member 1 
ABCE1                 1.000   ATP-binding cassette, sub-family E, member 1 
ABCF3                 0.035   ATP-binding cassette, sub-family F (GCN20), member ...
ABCA9                 0.032   ATP-binding cassette, sub-family A, member 9 
CFTR                  0.030   cystic fibrosis transmembrane conductance regulator ...
ABCG4                 0.027   ATP-binding cassette, subfamily G, member 4 
ABCG4                 0.027   ATP-binding cassette, subfamily G, member 4 
ABCA8                 0.027   ATP-binding cassette, sub-family A member 8 
ABCA6                 0.025   ATP-binding cassette, sub-family A, member 6 
ABCA2                 0.025   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.025   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA5                 0.025   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.025   ATP-binding cassette, sub-family A , member 5 
ABCG1                 0.023   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.023   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG1                 0.023   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.023   ATP-binding cassette sub-family G member 1 isoform 3...
ABCG1                 0.023   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.023   ATP-binding cassette sub-family G member 1 isoform 2...
ABCB4                 0.023   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.023   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.023   ATP-binding cassette, subfamily B, member 4 isoform A...
ABCA10                0.023   ATP-binding cassette, sub-family A, member 10 [Homo...
ABCC6                 0.021   ATP-binding cassette, sub-family C, member 6 isofor...
LOC100292715          0.021   PREDICTED: hypothetical protein 
ABCA13                0.020   ATP binding cassette, sub-family A (ABC1), member 13...
ABCB7                 0.020   ATP-binding cassette, sub-family B, member 7 
ABCC4                 0.020   ATP-binding cassette, sub-family C, member 4 isofor...
ABCC4                 0.020   ATP-binding cassette, sub-family C, member 4 isofor...
TAP1                  0.020   transporter 1, ATP-binding cassette, sub-family B [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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