Guide to the Human Genome
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Name: C19orf39 Sequence: fasta or formatted (229aa) NCBI GI: 190684679
Description:

hypothetical protein LOC126074

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         25           3
 C cysteine            1.7          4           1
 D aspartate           3.9          9           1
 E glutamate           6.6         15           2
 F phenylalanine       3.1          7           1
 G glycine            12.2         28           2
 H histidine           2.2          5           1
 I isoleucine          1.3          3           1
 K lysine              1.3          3           1
 L leucine            15.7         36           4
 M methionine          2.6          6           2
 N asparagine          0.0          0           0
 P proline            11.4         26           2
 Q glutamine           5.2         12           1
 R arginine            5.7         13           2
 S serine              5.7         13           3
 T threonine           5.2         12           2
 V valine              1.7          4           1
 W tryptophan          1.7          4           2
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC126074 
ZNF197                0.029   zinc finger protein 197 isoform 1 
ZNF197                0.029   zinc finger protein 197 isoform 2 
ABCE1                 0.016   ATP-binding cassette, sub-family E, member 1 
ABCE1                 0.016   ATP-binding cassette, sub-family E, member 1 
LOC100294448          0.016   PREDICTED: hypothetical protein 
KATNAL1               0.016   katanin p60 subunit A-like 1 
KATNAL1               0.016   katanin p60 subunit A-like 1 
SPATA5L1              0.013   spermatogenesis associated 5-like 1 
PIK3CG                0.013   phosphoinositide-3-kinase, catalytic, gamma polypept...
RFC4                  0.013   replication factor C 4 
RFC4                  0.013   replication factor C 4 
YME1L1                0.013   YME1-like 1 isoform 1 
YME1L1                0.013   YME1-like 1 isoform 3 
ANKRD43               0.013   ankyrin repeat domain 43 
NPHP3                 0.011   nephrocystin 3 
RUVBL1                0.011   RuvB-like 1 
DYNC1H1               0.011   cytoplasmic dynein 1 heavy chain 1 
MDFI                  0.011   MyoD family inhibitor 
SSPO                  0.011   SCO-spondin 
PRIC285               0.011   PPAR-alpha interacting complex protein 285 isoform ...
TBC1D2                0.009   TBC1 domain family, member 2 
UPF1                  0.009   regulator of nonsense transcripts 1 
PPP4R4                0.009   HEAT-like repeat-containing protein isoform 1 
DUSP8                 0.009   dual specificity phosphatase 8 
AP4M1                 0.009   adaptor-related protein complex 4, mu 1 subunit [Hom...
DPP7                  0.009   dipeptidyl peptidase 7 preproprotein 
BRUNOL6               0.009   bruno-like 6, RNA binding protein 
FAM109B               0.009   hypothetical protein LOC150368 
PSMC1                 0.009   proteasome 26S ATPase subunit 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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