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Search of human proteins with 190358534
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform b
[Homo sapiens]
(1026 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 2040 0.0
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 2035 0.0
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 2035 0.0
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 337 4e-92
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 322 1e-87
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 318 1e-86
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 313 5e-85
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 306 6e-83
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 306 6e-83
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 306 6e-83
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 306 6e-83
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 306 6e-83
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 306 6e-83
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 306 6e-83
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 303 7e-82
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 303 7e-82
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 297 3e-80
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 295 2e-79
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 278 2e-74
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 275 2e-73
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 273 5e-73
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 271 2e-72
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 269 1e-71
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 268 3e-71
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 268 3e-71
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 268 3e-71
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 262 1e-69
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 247 4e-65
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 246 8e-65
gi|4557565 excision repair cross-complementing rodent repair def... 244 4e-64
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 2040 bits (5285), Expect = 0.0
Identities = 1026/1026 (100%), Positives = 1026/1026 (100%)
Query: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
Sbjct: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
Query: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
Sbjct: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
Query: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
Sbjct: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
Query: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
Sbjct: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
Query: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
Sbjct: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
Query: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
Sbjct: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
Query: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
Sbjct: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
Query: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
Sbjct: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
Query: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
Query: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
Sbjct: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
Query: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
Query: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRK 780
RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRK
Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRK 780
Query: 781 MANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHI 840
MANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHI
Sbjct: 781 MANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHI 840
Query: 841 NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRL 900
NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRL
Sbjct: 841 NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRL 900
Query: 901 DGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 960
DGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE
Sbjct: 901 DGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 960
Query: 961 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLL 1020
DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLL
Sbjct: 961 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIATLL 1020
Query: 1021 KTSMGL 1026
KTSMGL
Sbjct: 1021 KTSMGL 1026
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 2035 bits (5272), Expect = 0.0
Identities = 1026/1028 (99%), Positives = 1026/1028 (99%), Gaps = 2/1028 (0%)
Query: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
Sbjct: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
Query: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
Sbjct: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
Query: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
Sbjct: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
Query: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
Sbjct: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
Query: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
Sbjct: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
Query: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
Sbjct: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
Query: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
Sbjct: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
Query: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
Sbjct: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
Query: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
Query: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
Sbjct: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
Query: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
Query: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCNVMMQL 778
RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL EKNTEMCNVMMQL
Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780
Query: 779 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 838
RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
Sbjct: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
Query: 839 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 898
HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
Sbjct: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
Query: 899 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958
RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
Sbjct: 901 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960
Query: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1018
AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
Sbjct: 961 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020
Query: 1019 LLKTSMGL 1026
LLKTSMGL
Sbjct: 1021 LLKTSMGL 1028
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 2035 bits (5272), Expect = 0.0
Identities = 1026/1028 (99%), Positives = 1026/1028 (99%), Gaps = 2/1028 (0%)
Query: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT
Sbjct: 1 MNLFNLDRFRFEKRNKIEEAPEATPQPSQPGPSSPISLSAEEENAEGEVSRANTPDSDIT 60
Query: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV
Sbjct: 61 EKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPNCSNTVQEKTFNKDTV 120
Query: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL
Sbjct: 121 IIVSEPSEDEESQGLPTMARRNDDISELEDLSELEDLKDAKLQTLKELFPQRSDNDLLKL 180
Query: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN
Sbjct: 181 IESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSIKKTRLDHGEESN 240
Query: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY
Sbjct: 241 ESAESSSNWEKQESIVLKLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQY 300
Query: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY
Sbjct: 301 VSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVVEDSEY 360
Query: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP
Sbjct: 361 DSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITELRP 420
Query: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG
Sbjct: 421 FNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTGNG 480
Query: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY
Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
Query: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI
Sbjct: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVI 600
Query: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV
Sbjct: 601 VTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPV 660
Query: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL
Sbjct: 661 QNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFIL 720
Query: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCNVMMQL 778
RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL EKNTEMCNVMMQL
Sbjct: 721 RRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQL 780
Query: 779 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 838
RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
Sbjct: 781 RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR 840
Query: 839 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 898
HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
Sbjct: 841 HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL 900
Query: 899 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958
RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
Sbjct: 901 RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 960
Query: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1018
AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
Sbjct: 961 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT 1020
Query: 1019 LLKTSMGL 1026
LLKTSMGL
Sbjct: 1021 LLKTSMGL 1028
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 337 bits (863), Expect = 4e-92
Identities = 206/547 (37%), Positives = 317/547 (57%), Gaps = 34/547 (6%)
Query: 479 NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY 538
NG +QP + ++ YQ G+ WL ++ ++G+NGILADEMGLGKT+Q IA +A
Sbjct: 206 NGQPVPFQQPKHFTGGV-MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIAL 264
Query: 539 LYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSR---YE 595
+ Q G GP L+ P ST+ NW+ E + P + + Y+G+QEER+++ NI+ R +
Sbjct: 265 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQ 324
Query: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
+ V++T++ A+ DR+ + Y I DEGH +KNM + L NA+N+LLL
Sbjct: 325 IHPVVITSFEIAMR---DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLL 381
Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHA- 711
TGTP+QNNL EL SLLNF++P +F S F + S + I KER + H
Sbjct: 382 TGTPLQNNLSELWSLLNFLLPDVFDDLKS-FESWFDITSLSETAEDIIAKEREQNVLHML 440
Query: 712 KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEM 771
QI+ PF+LRR+K +V ++PPK++ + +S+KQE Y + NR +I N+ ++E
Sbjct: 441 HQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNR---TIANMFGSSEK 497
Query: 772 CNVMM--------QLRKMANHPLLHRQYYTAEKLKEMSQLML-KEPTHCEANPDLIFE-D 821
+ + + RK N+ + EKL Q + +E E N + E +
Sbjct: 498 ETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVN 557
Query: 822 MEVMTDFELHVLCKQYRHI---------NNFQLDMDLILDSGKFRVLGCILSELKQKGDR 872
+++ L C + ++ F++D +L+ +SGKF +L +L ELK++G +
Sbjct: 558 LKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHK 617
Query: 873 VVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAG 932
V+LFSQ T MLDIL + RLDG SER + FNTD ++F+FL+ST+AG
Sbjct: 618 VLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAG 677
Query: 933 GLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQ 992
GLGINLT+A+ VI++D D NP +D QA+DRCHR+GQTK V+V +L++ TI++ +++
Sbjct: 678 GLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAA 737
Query: 993 QKLKLEQ 999
K KLE+
Sbjct: 738 AKRKLEK 744
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 322 bits (825), Expect = 1e-87
Identities = 197/515 (38%), Positives = 290/515 (56%), Gaps = 63/515 (12%)
Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q IA L YL N GPH+++VP S
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
T+ NW+ E W P+L+V+C+ G ++ R +++V VT+Y I ++S
Sbjct: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298
Query: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
+F++ Y + DE H +KN S + + + NRLLLTGTP+QNNL EL +LLNF++
Sbjct: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358
Query: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
P +F+S+ + F +K D++ + ER+ HA ++KPF+LRR+K +V K LPPKK
Sbjct: 359 PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411
Query: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEM--CNVMMQLRKMANHPLLHRQYYT 793
+ +S+ Q + Y + + +N+ K +M N++MQLRK NHP L
Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466
Query: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
E P + D ++ +S
Sbjct: 467 ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485
Query: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
GK VL +L++LK++G RV++FSQ T +LDILE + Y RLDG+T ER I
Sbjct: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAI 545
Query: 914 DEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
+ FN + F+F+LST+AGGLGINL SA+VVIL+D D NP D QA DR HR+GQ K V
Sbjct: 546 EAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 605
Query: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1007
V +LI+ T+EE + + + ++KL D + +G
Sbjct: 606 RVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 638
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 318 bits (816), Expect = 1e-86
Identities = 194/506 (38%), Positives = 285/506 (56%), Gaps = 61/506 (12%)
Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L Y+ N GPH+++VP S
Sbjct: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 239
Query: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
T+ NW+ E W PTL+ +C G +E+R ++ E ++V VT+Y I ++S
Sbjct: 240 TLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-WDVCVTSYEMLIK---EKS 295
Query: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
+F++ Y + DE H +KN S + + NRLLLTGTP+QNNL EL SLLNF++
Sbjct: 296 VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLL 355
Query: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
P +F+S+ + F + D++ + ER+ +++PF+LRR+K +V K LPPKK
Sbjct: 356 PDVFNSA-DDFDSWFDTNNCLGDQKLV---ERL---HMVLRPFLLRRIKADVEKSLPPKK 408
Query: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEM--CNVMMQLRKMANHPLLHRQYYT 793
+ +S+ Q + Y + + +N+ K +M N++MQLRK NHP L
Sbjct: 409 EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF----- 463
Query: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
E P + DM L+ +S
Sbjct: 464 ---------------DGAEPGPP--------------------------YTTDMHLVTNS 482
Query: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
GK VL +L +LK++G RV++FSQ T +LDILE + Y RLDG+T ER I
Sbjct: 483 GKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSI 542
Query: 914 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
+ +N + FVF+LST+AGGLGINL +A+VVIL+D D NP D QA DR HR+GQTK V
Sbjct: 543 NAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTV 602
Query: 973 LVIKLISQGTIEESMLKINQQKLKLE 998
V + I+ T+EE +++ + KL+L+
Sbjct: 603 RVFRFITDNTVEERIVERAEMKLRLD 628
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 313 bits (802), Expect = 5e-85
Identities = 197/527 (37%), Positives = 290/527 (55%), Gaps = 75/527 (14%)
Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q IA L YL N GPH+++VP S
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
T+ NW+ E W P+L+V+C+ G ++ R +++V VT+Y I ++S
Sbjct: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298
Query: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
+F++ Y + DE H +KN S + + + NRLLLTGTP+QNNL EL +LLNF++
Sbjct: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358
Query: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
P +F+S+ + F +K D++ + ER+ HA ++KPF+LRR+K +V K LPPKK
Sbjct: 359 PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411
Query: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEM--CNVMMQLRKMANHPLLHRQYYT 793
+ +S+ Q + Y + + +N+ K +M N++MQLRK NHP L
Sbjct: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466
Query: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
E P + D ++ +S
Sbjct: 467 ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485
Query: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER---- 909
GK VL +L++LK++G RV++FSQ T +LDILE + Y RLDG+T ER
Sbjct: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKF 545
Query: 910 --------IHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 960
I+ FN + F+F+LST+AGGLGINL SA+VVIL+D D NP D QA
Sbjct: 546 LEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 605
Query: 961 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1007
DR HR+GQ K V V +LI+ T+EE + + + ++KL D + +G
Sbjct: 606 DRAHRIGQKKPVRVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 650
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 306 bits (784), Expect = 6e-83
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
E+ P +E S+ +G E+ + K + + E
Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F H+ +DL
Sbjct: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 306 bits (784), Expect = 6e-83
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
E+ P +E S+ +G E+ + K + + E
Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F H+ +DL
Sbjct: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 306 bits (784), Expect = 6e-83
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
E+ P +E S+ +G E+ + K + + E
Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F H+ +DL
Sbjct: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 306 bits (784), Expect = 6e-83
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
E+ P +E S+ +G E+ + K + + E
Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F H+ +DL
Sbjct: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 306 bits (784), Expect = 6e-83
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
E+ P +E S+ +G E+ + K + + E
Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F H+ +DL
Sbjct: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 306 bits (784), Expect = 6e-83
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
E+ P +E S+ +G E+ + K + + E
Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F H+ +DL
Sbjct: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 306 bits (784), Expect = 6e-83
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
Query: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
Query: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
Query: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
Query: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
Query: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
E+ P +E S+ +G E+ + K + + E
Sbjct: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
Query: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
Query: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
Query: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
Query: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Query: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
Query: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F H+ +DL
Sbjct: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
Query: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
Query: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 303 bits (775), Expect = 7e-82
Identities = 266/939 (28%), Positives = 431/939 (45%), Gaps = 120/939 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178
+P E + + AR I ELE+L S DL+ LK L F ++ +++
Sbjct: 338 DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
Query: 179 KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235
+ +T++ A+ + ++ K + E ++ Q I +K R H
Sbjct: 398 ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
Query: 236 GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291
E N + + ++++ V KL K + RE KE E + E + L
Sbjct: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
Query: 292 FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351
E+ + + Q + + ++ Y N T + K + A+ ++R+K
Sbjct: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
Query: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411
K+ E++E G + S+L D GE + E + + G++ P+ K
Sbjct: 564 KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
Query: 412 AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469
A ++ N + + S E+ ++ QE + I L E++S K
Sbjct: 614 ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
Query: 470 TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506
KQ+ +M G + +E+ S L + +LK YQ GL
Sbjct: 674 AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
Query: 507 WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565
W+ ++ + LNGILADEMGLGKTIQ IA + YL + NGP+LI+VP ST+ NW E +
Sbjct: 734 WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
Query: 566 LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625
W P++ + Y G+ R+ + + S +NV++TTY I D+ + +++ Y
Sbjct: 794 KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
Query: 626 IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684
I DEGH +KN Q L T A R+LLTGTP+QN L EL +LLNF++P +F S S
Sbjct: 849 IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
Query: 685 EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740
+ F++ E+ +E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
Query: 741 CAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQYYT 793
C MS Q+ LY + + + EK+ + + N +MQLRK+ NHP + +
Sbjct: 968 CDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ---- 1023
Query: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
H E + + + N +L S
Sbjct: 1024 ----------------HIEES------------------FAEHLGYSNGVINGAELYRAS 1049
Query: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
GKF +L IL +L+ RV+LF Q T ++ I+E YLRLDG T+ +R L+
Sbjct: 1050 GKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL 1109
Query: 914 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
+FN F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ EV
Sbjct: 1110 KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEV 1169
Query: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1170 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 303 bits (775), Expect = 7e-82
Identities = 266/939 (28%), Positives = 431/939 (45%), Gaps = 120/939 (12%)
Query: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKEL----FPQRSDNDLL 178
+P E + + AR I ELE+L S DL+ LK L F ++ +++
Sbjct: 338 DPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVV 397
Query: 179 KLIESTSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDH 235
+ +T++ A+ + ++ K + E ++ Q I +K R H
Sbjct: 398 ACMRRDTTLETALNSKAY---------KRSKRQTLREARMTEKLEKQQKIEQERKRRQKH 448
Query: 236 GEESNESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKV 291
E N + + ++++ V KL K + RE KE E + E + L
Sbjct: 449 QEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMA 508
Query: 292 FAEDQDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNP 351
E+ + + Q + + ++ Y N T + K + A+ ++R+K
Sbjct: 509 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRK----- 563
Query: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411
K+ E++E G + S+L D GE + E + + G++ P+ K
Sbjct: 564 KKAEENAE---GGE--SALGPD---GEPIDESSQMSDLPVKVTHTETGKVLFGPEAP--K 613
Query: 412 AQKITELRPFNSWEALFTKMSKTNGLS--EDLIWHCKTLIQERDVVIRLMNKCEDISNKL 469
A ++ N + + S E+ ++ QE + I L E++S K
Sbjct: 614 ASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKD 673
Query: 470 TKQV------------TMLTGNGGGWN-----------IEQPSILNQSLSLKPYQKVGLN 506
KQ+ +M G + +E+ S L + +LK YQ GL
Sbjct: 674 AKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLE 733
Query: 507 WLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLREVN 565
W+ ++ + LNGILADEMGLGKTIQ IA + YL + NGP+LI+VP ST+ NW E +
Sbjct: 734 WMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFD 793
Query: 566 LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKLNYA 625
W P++ + Y G+ R+ + + S +NV++TTY I D+ + +++ Y
Sbjct: 794 KWAPSVVKISYKGTPAMRRSLVPQLRS--GKFNVLLTTYEYIIK---DKHILAKIRWKYM 848
Query: 626 IFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTS 684
I DEGH +KN Q L T A R+LLTGTP+QN L EL +LLNF++P +F S S
Sbjct: 849 IVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF-KSCS 907
Query: 685 EIRRMFSSKTKSADEQSIYEKER----IAHAKQIIKPFILRRVKEEVLKQLPPKKDRIEL 740
+ F++ E+ +E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIK 967
Query: 741 CAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQYYT 793
C MS Q+ LY + + + EK+ + + N +MQLRK+ NHP + +
Sbjct: 968 CDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ---- 1023
Query: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
H E + + + N +L S
Sbjct: 1024 ----------------HIEES------------------FAEHLGYSNGVINGAELYRAS 1049
Query: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
GKF +L IL +L+ RV+LF Q T ++ I+E YLRLDG T+ +R L+
Sbjct: 1050 GKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALL 1109
Query: 914 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
+FN F+FLLST+AGGLG+NL +A+ V++ D D NP+ D QA+DR HR+GQ EV
Sbjct: 1110 KKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEV 1169
Query: 973 LVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 1170 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1208
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 297 bits (761), Expect = 3e-80
Identities = 191/523 (36%), Positives = 283/523 (54%), Gaps = 67/523 (12%)
Query: 486 EQPSIL--NQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEG 543
+QPS + ++ L L+ YQ GLNWLA G + ILADEMGLGKTIQ I+FL YL+ E
Sbjct: 468 KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEH 527
Query: 544 N-NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED----YN 598
GP L+VVP ST+ +W RE+ W + + Y G R IR + + ++ +N
Sbjct: 528 QLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFN 587
Query: 599 VIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGT 658
+++TTY + D++ L + DE H LKN S+ Y+ L+ +N+RLL+TGT
Sbjct: 588 ILLTTYEILLK---DKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 644
Query: 659 PVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPF 718
P+QN+L EL SLL+F+MP FSS +E + A + ++PF
Sbjct: 645 PLQNSLKELWSLLHFIMPEKFSSWED-----------FEEEHGKGREYGYASLHKELEPF 693
Query: 719 ILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE--MCNVMM 776
+LRRVK++V K LP K ++I MS Q+Q Y + R K+++ K + N+MM
Sbjct: 694 LLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMM 753
Query: 777 QLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQ 836
+L+K NH L +K P + E
Sbjct: 754 ELKKCCNHCYL-----------------IKPPDNNE------------------------ 772
Query: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
N + LI SGK +L +L L+++G+RV++FSQ MLDIL LK+ Q
Sbjct: 773 --FYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFP 830
Query: 897 YLRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
+ RLDG + R +D FN + + F FLLST+AGGLGINL SA+ V++ D D NP N
Sbjct: 831 FQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQN 890
Query: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 998
D QA+ R HR+GQ K+V + +L+++G++EE +L+ ++K+ L+
Sbjct: 891 DLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLD 933
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 295 bits (754), Expect = 2e-79
Identities = 191/522 (36%), Positives = 286/522 (54%), Gaps = 66/522 (12%)
Query: 486 EQPSILN-QSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
+QP+ L ++L L+ YQ GLNWLA + ILADEMGLGKTIQ I+FL+YL+ +
Sbjct: 472 KQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQ 531
Query: 545 -NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN--IHSRYE--DYNV 599
GP LIVVP ST+ +W RE +W P + V+ Y G R IR IHS+ + +N
Sbjct: 532 LYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNA 591
Query: 600 IVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659
++TTY + D+++ + + DE H LKN S+ Y+ L+ +N+RLL+TGTP
Sbjct: 592 LITTYEILLK---DKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTP 648
Query: 660 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFI 719
+QN+L EL SLL+F+MP F E K + QS++ ++++PF+
Sbjct: 649 LQNSLKELWSLLHFIMPEKF--EFWEDFEEDHGKGRENGYQSLH---------KVLEPFL 697
Query: 720 LRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSI--NNLEKNTEMCNVMMQ 777
LRRVK++V K LP K ++I MS Q+Q Y + R K++ + N++M+
Sbjct: 698 LRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVME 757
Query: 778 LRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQY 837
L+K NH L +K P E
Sbjct: 758 LKKCCNHCYL-----------------IKPPEENERE----------------------- 777
Query: 838 RHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRY 897
N ++ + LI SGK +L +L+ L+++G+RV++FSQ MLDIL L + +
Sbjct: 778 ---NGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPF 834
Query: 898 LRLDGKTQISERIHLIDEFNTD-MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYND 956
RLDG + R +D FN D + F FLLST+AGGLGINL SA+ V++ D D NP ND
Sbjct: 835 QRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQND 894
Query: 957 KQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLE 998
QA+ R HR+GQ K+V + +L+++GT+EE +++ ++K+ L+
Sbjct: 895 LQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLD 936
Score = 33.1 bits (74), Expect = 1.4
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 211 SSSSEPYEEDEFNDDQSIKKTRLDHGEESNESAESSSNWEKQES--------IVLKLQKE 262
S S E ++ +D S HG ESN S+ESS + + ES VL KE
Sbjct: 31 SDSGSQSESEQGSDPGS------GHGSESNSSSESSESQSESESESAGSKSQPVLPEAKE 84
Query: 263 FPNFDKQELREVLKEHEWMYTEALESLKVFAEDQDMQYVSQSEVPNGKEVSSRSQN-YPK 321
P K+ + +V K M+ E + V ++ Q S+ + +E SS S++ PK
Sbjct: 85 KPASKKERIADVKK----MWEEYPDVYGVRRSNRSRQEPSRFNIK--EEASSGSESGSPK 138
Query: 322 NATKTKLKQKFSMKAQ 337
+ +LK++ K +
Sbjct: 139 RRGQRQLKKQEKWKQE 154
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 278 bits (711), Expect = 2e-74
Identities = 193/533 (36%), Positives = 280/533 (52%), Gaps = 70/533 (13%)
Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL +Y +G +GP L++ P ST
Sbjct: 968 LREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLST 1027
Query: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFN-----------IHSRYEDYNVIVTTYN 605
I NW RE W L V+ Y+GSQ R+ I+ I Y+ ++ I+TT+
Sbjct: 1028 IPNWEREFRTWTE-LNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFE 1085
Query: 606 CAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLL 665
++ + R + + DE H LKN + L ++ +++LLTGTP+QN +
Sbjct: 1086 MILTDCPE---LRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 1142
Query: 666 ELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKE 725
EL SLL+F+ P F S T+ ++ KT+ E++ + I+KP +LRR+KE
Sbjct: 1143 ELFSLLHFLEPSRFPSETTFMQEFGDLKTE----------EQVQKLQAILKPMMLRRLKE 1192
Query: 726 EVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNV------MMQLR 779
+V K L PK++ I ++ Q++ Y + L+K+ L K NV MM+LR
Sbjct: 1193 DVEKNLAPKEETIIEVELTNIQKKYYRAI---LEKNFTFLSKGGGQANVPNLLNTMMELR 1249
Query: 780 KMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRH 839
K NHP L EK+ E KE TH +PD
Sbjct: 1250 KCCNHPYLING--AEEKILEE----FKE-THNAESPD----------------------- 1279
Query: 840 INNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLR 899
FQL +I +GK ++ +L +LK G RV++FSQ LDILE L ++ Y R
Sbjct: 1280 ---FQLQA-MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYER 1335
Query: 900 LDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ 958
+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP ND Q
Sbjct: 1336 IDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQ 1395
Query: 959 AEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
A+ RCHR+GQ+K V + +LI++ + E M KL L++ + G E +
Sbjct: 1396 AQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENA 1448
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 275 bits (702), Expect = 2e-73
Identities = 185/538 (34%), Positives = 276/538 (51%), Gaps = 78/538 (14%)
Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556
L+ YQ G+NWL + N ILADEMGLGKTIQ+IAFL +Y G +GP L++ P ST
Sbjct: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591
Query: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDY---------------NVIV 601
I NW RE N W + + Y+GS R+ I+ +YE Y + ++
Sbjct: 592 ITNWEREFNTWTE-MNTIVYHGSLASRQMIQ-----QYEMYCKDSRGRLIPGAYKFDALI 645
Query: 602 TTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQ 661
TT+ +S + R ++ I DE H LKN L ++ +++LLTGTP+Q
Sbjct: 646 TTFEMILSDCPE---LREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQ 702
Query: 662 NNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILR 721
N + EL SLL+F+ P F S + ++ KT+ E++ + I+KP +LR
Sbjct: 703 NTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTE----------EQVQKLQAILKPMMLR 752
Query: 722 RVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNT------EMCNVM 775
R+KE+V K L PK++ I ++ Q++ Y + L+K+ + L K + N M
Sbjct: 753 RLKEDVEKNLAPKQETIIEVELTNIQKKYYRAI---LEKNFSFLSKGAGHTNMPNLLNTM 809
Query: 776 MQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCK 835
M+LRK NHP Y +E +E H + DF L + +
Sbjct: 810 MELRKCCNHP------YLINGAEEKILTEFREACHI------------IPHDFHLQAMVR 851
Query: 836 QYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQH 895
+GK ++ +L +LK G +V++FSQ LDILE L ++
Sbjct: 852 S----------------AGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRY 895
Query: 896 RYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPY 954
Y R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I+ D D NP
Sbjct: 896 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 955
Query: 955 NDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSM 1012
ND QA+ RCHR+GQ+K V V +LI++ + E M KL L++ + G +G++
Sbjct: 956 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNI 1013
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 273 bits (699), Expect = 5e-73
Identities = 187/531 (35%), Positives = 275/531 (51%), Gaps = 66/531 (12%)
Query: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
+E+ S L+ YQ G+NWL + N ILADEMGLGKTIQ+I FL+ ++ G
Sbjct: 449 LEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGI 508
Query: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED-------- 596
+GP LI+ P STI NW RE W + + Y+GSQ R+ I+ Y D
Sbjct: 509 HGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQ-QYEMVYRDAQGNPLSG 566
Query: 597 ---YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRL 653
++V++TT+ ++ + +++ + I DE H LKN + L + +++
Sbjct: 567 VFKFHVVITTFEMILADCPE---LKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKV 623
Query: 654 LLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQ 713
LLTGTP+QN++ EL SLLNF+ P F S T+ + KT+ E++ +
Sbjct: 624 LLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGDLKTE----------EQVKKLQS 673
Query: 714 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGL----FNRLKKSINNLEKNT 769
I+KP +LRR+K++V K L PK++ I ++ Q++ Y + F+ L K N
Sbjct: 674 ILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQ-HNMP 732
Query: 770 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 829
+ N MM+LRK NHP L EK+ E + TH PD
Sbjct: 733 NLINTMMELRKCCNHPYLING--AEEKILEDFR-----KTHSPDAPD------------- 772
Query: 830 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 889
FQL +I +GK ++ +L +L G +V++FSQ LDILE
Sbjct: 773 -------------FQLQA-MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDY 818
Query: 890 LKHHQHRYLRLDGKTQISERIHLIDEF-NTDMDIFVFLLSTKAGGLGINLTSANVVILHD 948
L ++ Y R+DG+ + + R ID F D D FVFLL T+AGGLGINLT+A+ I+ D
Sbjct: 819 LIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 878
Query: 949 IDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 999
D NP ND QA+ RCHR+GQ+K V V +LI++ + E M KL L++
Sbjct: 879 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 929
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 271 bits (693), Expect = 2e-72
Identities = 180/525 (34%), Positives = 266/525 (50%), Gaps = 78/525 (14%)
Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554
+L PYQ GLNWL G + ILADEMGLGKT+Q FL LY+EG++ GP L+ P
Sbjct: 725 TLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPL 784
Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
STI NW RE +W P + V+ Y G ++ R IR N S +ED
Sbjct: 785 STIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFS-FEDNAIRGGKKASRMKKEASV 843
Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
++V++T+Y + D ++ + I DE H LKN S ++ L + ++LLL
Sbjct: 844 KFHVLLTSYELI---TIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLL 900
Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
TGTP+QNNL EL LLNF+ P F + + I ++++I ++
Sbjct: 901 TGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF----------ADIAKEDQIKKLHDML 950
Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSIN--NLEKNTEMCN 773
P +LRR+K +V K +P K + I +S Q++ Y + R +++N + N
Sbjct: 951 GPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVSLLN 1010
Query: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
V+M L+K NHP L P P +
Sbjct: 1011 VVMDLKKCCNHPYLF-------------------PVAAMEAPKM---------------- 1035
Query: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
N LI SGK +L +L LK+ G RV++FSQ T MLD+LE L+H
Sbjct: 1036 ------PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHE 1089
Query: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI++D D N
Sbjct: 1090 GYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1149
Query: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
P+ND QA R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1150 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMML 1194
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 269 bits (687), Expect = 1e-71
Identities = 187/547 (34%), Positives = 279/547 (51%), Gaps = 72/547 (13%)
Query: 485 IEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN 544
I+Q L+ YQ GLNWL + N ILADEMGLGKTIQ+I FL + G
Sbjct: 848 IDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGI 907
Query: 545 NGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQI-RFNIHSRYED------- 596
GP LI+ P STI NW RE W + V+ Y+GS R+ I ++ ++ R
Sbjct: 908 RGPFLIIAPLSTIANWEREFRTW-TDINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGA 966
Query: 597 --YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLL 654
+ I+TT+ + + ++ I DE H LKN + L +N +++L
Sbjct: 967 YRFQAIITTFEMILGGCGE---LNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023
Query: 655 LTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQI 714
LTGTP+QN + EL SLL+F+ P F S ++ ++ KT +E++ + I
Sbjct: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKT----------EEQVQKLQAI 1073
Query: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNT----- 769
+KP +LRR+KE+V K+L PK++ I ++ Q++ Y + L+K+ + L K
Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAI---LEKNFSFLSKGAGQTNV 1130
Query: 770 -EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDM--EVMT 826
+ N MM+LRK NHP L +K + +L E F D +
Sbjct: 1131 PNLVNTMMELRKCCNHPYL---------IKGAEEKILGE-----------FRDTYNPAAS 1170
Query: 827 DFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDIL 886
DF L +I +GK ++ +L ++K G +V++FSQ LDIL
Sbjct: 1171 DFHLQA----------------MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDIL 1214
Query: 887 EVLLKHHQHRYLRLDGKTQISERIHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVI 945
E L H ++ Y R+DG+ + + R ID F+ D D FVFLL T+AGGLGINLT+A+ I
Sbjct: 1215 EDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCI 1274
Query: 946 LHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVD 1005
+ D D NP ND QA+ RCHR+GQ K V V +L+++ + E M KL L++ +
Sbjct: 1275 IFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSM 1334
Query: 1006 EGDEGSM 1012
G E ++
Sbjct: 1335 SGRESNV 1341
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 268 bits (684), Expect = 3e-71
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 78/525 (14%)
Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
Query: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
+MM L+K NHP L P +P L E
Sbjct: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
Query: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
Query: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
Query: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 268 bits (684), Expect = 3e-71
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 78/525 (14%)
Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 735 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 794
Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 795 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 853
Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 854 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 910
Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 911 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 960
Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 961 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1020
Query: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
+MM L+K NHP L P +P L E
Sbjct: 1021 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1051
Query: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 1052 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1099
Query: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 1100 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1159
Query: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1160 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1204
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 268 bits (684), Expect = 3e-71
Identities = 179/525 (34%), Positives = 267/525 (50%), Gaps = 78/525 (14%)
Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPA 554
+L YQ GLNWL G + ILADEMGLGKTIQ I FL LY+EG+ GP L+ P
Sbjct: 794 TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPL 853
Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
STI NW RE +W P V+ Y G ++ R IR N S +ED
Sbjct: 854 STIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFS-FEDNAIKGGKKAFKMKREAQV 912
Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
++V++T+Y + D++ ++ + DE H LKN S ++ L +++LLL
Sbjct: 913 KFHVLLTSYELI---TIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLL 969
Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 970 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 1019
Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773
P +LRR+K +V K +P K + I +S Q++ Y + R +++N+ + N
Sbjct: 1020 GPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLN 1079
Query: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
+MM L+K NHP L P +P L E
Sbjct: 1080 IMMDLKKCCNHPYLF-------------------PVAAMESPKLPSGAYE---------- 1110
Query: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
LI SGK +L +L +LK++G RV++FSQ T MLD+LE L +
Sbjct: 1111 ------------GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYE 1158
Query: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
++Y R+DG + R ID FN F FLLST+AGGLGINL +A+ VI+ D D N
Sbjct: 1159 GYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWN 1218
Query: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
P+ND QA R HR+GQ +V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1219 PHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMML 1263
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 262 bits (669), Expect = 1e-69
Identities = 183/506 (36%), Positives = 260/506 (51%), Gaps = 63/506 (12%)
Query: 495 LSLKPYQKVGLNWLALVHKHGLNG-ILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVV 552
+ L+ YQ G+NWLA H NG IL DEMGLGKT Q IA YL N+ GP LI+
Sbjct: 44 IHLRSYQLEGVNWLAQ-RFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILC 102
Query: 553 PASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSD 612
P S + NW E+ + P L + Y G +EER ++ ++ ++V++TTY +
Sbjct: 103 PLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESR-FHVLLTTYEICLK--- 158
Query: 613 DRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLN 672
D S + + + DE H LKN S+ ++ L + LLLTGTP+QN+L EL SLL+
Sbjct: 159 DASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLS 218
Query: 673 FVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLP 732
FV P +FS E F + + +++S E + ++++PF+LRRVK EV +LP
Sbjct: 219 FVEPDLFS---KEEVGDFIQRYQDIEKES----ESASELHKLLQPFLLRRVKAEVATELP 271
Query: 733 PKKDRIELCAMSEKQEQLYLG-LFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLHRQY 791
K + + MS Q++ Y L L N K ++ N++ QLRK +HP L
Sbjct: 272 KKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYL---- 327
Query: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
F+ +E F++ L
Sbjct: 328 ---------------------------FDGVEP----------------EPFEVGDHLTE 344
Query: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
SGK +L +L+ L G RV+LFSQ T MLDIL+ + + + Y R+DG + ER
Sbjct: 345 ASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHL 404
Query: 912 LIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKE 971
I F IFVFLLST+AGG+G+NLT+A+ VI D D NP ND QA R HR+GQ K
Sbjct: 405 AIKNFG-QQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKS 463
Query: 972 VLVIKLISQGTIEESMLKINQQKLKL 997
V VI+LI + T+EE + + KL+L
Sbjct: 464 VKVIRLIGRDTVEEIVYRKAASKLQL 489
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 247 bits (631), Expect = 4e-65
Identities = 187/564 (33%), Positives = 280/564 (49%), Gaps = 82/564 (14%)
Query: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLA----YLYQEGNNG------ 546
L+ YQ+ G+NWLA ++K+ L+GIL D+MGLGKT+Q+I LA + QE
Sbjct: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325
Query: 547 --PHLIVVPASTIDNWLREVNLWCPT--LKVLCYYGSQEERKQIRFNIHSRYEDYNVIVT 602
P L+V P + +W+ EV +C L L Y G ER +++ + + +N+IV
Sbjct: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQV----KRHNLIVA 1381
Query: 603 TYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662
+Y+ +D FR +K NY I DEGH++KN + + + + AN R++L+GTP+QN
Sbjct: 1382 SYDVV---RNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438
Query: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERI------AHAKQIIK 716
N+LEL SL +F+MP + R S D +S ++ A +Q++
Sbjct: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL- 1497
Query: 717 PFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKK-------SINNLEKNT 769
PF+LRR+KE+VL+ LPPK + C +S Q QLY K S L + T
Sbjct: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEET 1557
Query: 770 E---------MCNVMMQLRKMANHPLL-----HRQYYT-AEKLKEMSQLMLKEPTHCEAN 814
E + + LRK+ NHP L H ++ T AEKL
Sbjct: 1558 EKPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKL----------------- 1600
Query: 815 PDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVV 874
+ + LH + + QL +D L +G G +E R++
Sbjct: 1601 ---------AVQNSSLHDIQHAPKLSALKQLLLDCGLGNGSTSESG---TESVVAQHRIL 1648
Query: 875 LFSQFTMMLDILEV-LLKHH--QHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKA 931
+F Q MLDI+E LLK H YLRLDG +R ++ FN D I V LL+T
Sbjct: 1649 IFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHV 1708
Query: 932 GGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 991
GGLG+NLT A+ V+ + D NP D QA DR HR+GQ + V V +LI++GT+EE ++ +
Sbjct: 1709 GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQ 1768
Query: 992 QQKLKLEQDMTTVDEGDEGSMPAD 1015
+ K+ + + + + SM D
Sbjct: 1769 KFKMNIANTVISQENSSLQSMGTD 1792
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 246 bits (628), Expect = 8e-65
Identities = 172/525 (32%), Positives = 265/525 (50%), Gaps = 78/525 (14%)
Query: 496 SLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNN-GPHLIVVPA 554
+L PYQ GLNWL G + ILADEMGLGKT+Q I FL LY+EG++ GP+L+ P
Sbjct: 699 TLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPL 758
Query: 555 STIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYED------------------ 596
STI NW RE +W P V+ Y G +E R IR N S +ED
Sbjct: 759 STIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS-FEDNAIRSGKKVFRMKKEVQI 817
Query: 597 -YNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
++V++T+Y + D+++ ++ + DE H LKN S ++ L + + +LLL
Sbjct: 818 KFHVLLTSYELI---TIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLL 874
Query: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQII 715
TGTP+QNNL EL LLNF+ P F++ + I ++++I ++
Sbjct: 875 TGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQIKKLHDLL 924
Query: 716 KPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNL--EKNTEMCN 773
P +LRR+K +V K +P K + I +S+ Q++ Y + R +++N+ + N
Sbjct: 925 GPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLN 984
Query: 774 VMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVL 833
+MM L+K NHP L P P L ++ L
Sbjct: 985 IMMDLKKCCNHPYLF-------------------PVAAVEAPVL------PNGSYDGSSL 1019
Query: 834 CKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHH 893
K + Q + + D G RVL I S++ + D +LE L++
Sbjct: 1020 VKSSGKLMLLQKMLKKLRDEG-HRVL--IFSQMTKMLD-------------LLEDFLEYE 1063
Query: 894 QHRYLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCN 952
++Y R+DG R ID FN F FLLST+AGGLGINL +A+ VI++D D N
Sbjct: 1064 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1123
Query: 953 PYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 997
P+ND QA R HR+GQ K+V++ + +++ ++EE + ++ ++K+ L
Sbjct: 1124 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMML 1168
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 244 bits (622), Expect = 4e-64
Identities = 167/510 (32%), Positives = 257/510 (50%), Gaps = 69/510 (13%)
Query: 500 YQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYL-----------YQEGNNGPH 548
YQ+ G+ WL +H GIL DEMGLGKTIQ IAFLA L Y+ GP
Sbjct: 510 YQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPT 569
Query: 549 LIVVPASTIDNWLREVNLWCPTLKVLCYY--GSQEERKQ--IRFNIHSRYEDYNVIVTTY 604
+IV P + + W++E + W P +V + GS +K+ IR H + +++T+Y
Sbjct: 570 VIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHC----HGILITSY 625
Query: 605 NCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNL 664
+ DD S R +Y I DEGH ++N + +R++L+G+P+QNNL
Sbjct: 626 SYIRLMQDDIS---RYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNL 682
Query: 665 LELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAH-----AKQIIKPFI 719
EL SL +F+ P + + + T + + + A+ + I P++
Sbjct: 683 RELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYL 742
Query: 720 LRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQ 777
LRR+K +V LP K +++ C ++++Q ++Y F K+ L ++ + ++
Sbjct: 743 LRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQN-FVDSKEVYRILNGEMQIFSGLIA 801
Query: 778 LRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQY 837
LRK+ NHP L P + + PD E+ Q+
Sbjct: 802 LRKICNHP----------------DLFSGGPKNLKGLPDDELEE-------------DQF 832
Query: 838 RHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRY 897
+ SGK V+ +L ++G RV+LFSQ MLDILEV L+ ++ Y
Sbjct: 833 GYWKR----------SGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTY 882
Query: 898 LRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDK 957
L++DG T I+ R LI +N D IFVFLL+T+ GGLG+NLT AN V+++D D NP D
Sbjct: 883 LKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDT 942
Query: 958 QAEDRCHRVGQTKEVLVIKLISQGTIEESM 987
QA +R R+GQ K+V V +L++ GTIEE +
Sbjct: 943 QARERAWRIGQKKQVTVYRLLTAGTIEEKI 972
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,266,060
Number of Sequences: 37866
Number of extensions: 1686466
Number of successful extensions: 7758
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 6938
Number of HSP's gapped (non-prelim): 770
length of query: 1026
length of database: 18,247,518
effective HSP length: 112
effective length of query: 914
effective length of database: 14,006,526
effective search space: 12801964764
effective search space used: 12801964764
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.