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Search of human proteins with 190358501
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190358501 hypothetical protein LOC55435 isoform b [Homo
sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190358501 hypothetical protein LOC55435 isoform b [Homo sapiens] 551 e-157
gi|190358499 hypothetical protein LOC55435 isoform a [Homo sapiens] 534 e-152
gi|115529449 upstream binding transcription factor, RNA polymera... 44 2e-04
gi|115529451 upstream binding transcription factor, RNA polymera... 44 2e-04
gi|7657671 upstream binding transcription factor, RNA polymerase... 44 2e-04
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 42 7e-04
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 40 0.003
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap... 39 0.005
gi|188497637 cell division cycle associated 7-like isoform 3 [Ho... 37 0.024
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 37 0.024
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 37 0.024
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 37 0.024
gi|55741677 SET domain containing 1A [Homo sapiens] 36 0.040
gi|217330641 IWS1 homolog [Homo sapiens] 36 0.040
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 35 0.053
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 35 0.053
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ... 35 0.090
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 35 0.090
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 35 0.090
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 35 0.090
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 35 0.090
gi|50962882 G patch domain containing 8 [Homo sapiens] 34 0.12
gi|196115290 glial fibrillary acidic protein isoform 2 [Homo sap... 34 0.15
gi|4503979 glial fibrillary acidic protein isoform 1 [Homo sapiens] 34 0.15
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 34 0.15
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 34 0.15
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 33 0.20
gi|21361639 DIPB protein [Homo sapiens] 33 0.26
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 33 0.34
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 33 0.34
>gi|190358501 hypothetical protein LOC55435 isoform b [Homo sapiens]
Length = 269
Score = 551 bits (1419), Expect = e-157
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 60
MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
Sbjct: 1 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 60
Query: 61 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPEDD 120
HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPEDD
Sbjct: 61 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPEDD 120
Query: 121 FESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDE 180
FESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDE
Sbjct: 121 FESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDE 180
Query: 181 EGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDNG 240
EGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDNG
Sbjct: 181 EGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDNG 240
Query: 241 NSEYSGFVNPVLELSDSGIRHSDTDQQTR 269
NSEYSGFVNPVLELSDSGIRHSDTDQQTR
Sbjct: 241 NSEYSGFVNPVLELSDSGIRHSDTDQQTR 269
>gi|190358499 hypothetical protein LOC55435 isoform a [Homo sapiens]
Length = 302
Score = 534 bits (1375), Expect = e-152
Identities = 269/302 (89%), Positives = 269/302 (89%), Gaps = 33/302 (10%)
Query: 1 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 60
MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS
Sbjct: 1 MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSS 60
Query: 61 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKE-------------------------- 94
HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKE
Sbjct: 61 HRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKELALQEEKLRLEEEALYAAQREAARAA 120
Query: 95 -------QERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL 147
QERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL
Sbjct: 121 KQRKLLEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL 180
Query: 148 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS 207
TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS
Sbjct: 181 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS 240
Query: 208 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ 267
NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ
Sbjct: 241 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQ 300
Query: 268 TR 269
TR
Sbjct: 301 TR 302
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 22/186 (11%)
Query: 60 SHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPED 119
+H PL +E +V++ R + I++ QK+ KK+ +EQ++ QY + +S P+D
Sbjct: 552 NHLPL-KERMVEIGSR-WQRISQSQKEHYKKLAEEQQK-----QYKVHLDLWVKSLSPQD 604
Query: 120 DFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWED 179
++ Y+ + S++ S + PN +SS + ++KS S DD D E ED
Sbjct: 605 ---------RAAYKEYISNKRKSMTKLRGPNPKSSRTTL-QSKSESEEDDEEDEDDEDED 654
Query: 180 EEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDN 239
EE + E + ED ++ S ++ + DD + + E+D + +
Sbjct: 655 EEEED-----DENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESE 709
Query: 240 GNSEYS 245
G+S S
Sbjct: 710 GSSSSS 715
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 22/186 (11%)
Query: 60 SHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPED 119
+H PL +E +V++ R + I++ QK+ KK+ +EQ++ QY + +S P+D
Sbjct: 552 NHLPL-KERMVEIGSR-WQRISQSQKEHYKKLAEEQQK-----QYKVHLDLWVKSLSPQD 604
Query: 120 DFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWED 179
++ Y+ + S++ S + PN +SS + ++KS S DD D E ED
Sbjct: 605 ---------RAAYKEYISNKRKSMTKLRGPNPKSSRTTL-QSKSESEEDDEEDEDDEDED 654
Query: 180 EEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDN 239
EE + E + ED ++ S ++ + DD + + E+D + +
Sbjct: 655 EEEED-----DENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESE 709
Query: 240 GNSEYS 245
G+S S
Sbjct: 710 GSSSSS 715
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 22/186 (11%)
Query: 60 SHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPED 119
+H PL +E +V++ R + I++ QK+ KK+ +EQ++ QY + +S P+D
Sbjct: 589 NHLPL-KERMVEIGSR-WQRISQSQKEHYKKLAEEQQK-----QYKVHLDLWVKSLSPQD 641
Query: 120 DFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWED 179
++ Y+ + S++ S + PN +SS + ++KS S DD D E ED
Sbjct: 642 ---------RAAYKEYISNKRKSMTKLRGPNPKSSRTTL-QSKSESEEDDEEDEDDEDED 691
Query: 180 EEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDN 239
EE + E + ED ++ S ++ + DD + + E+D + +
Sbjct: 692 EEEED-----DENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESE 746
Query: 240 GNSEYS 245
G+S S
Sbjct: 747 GSSSSS 752
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 41.6 bits (96), Expect = 7e-04
Identities = 50/204 (24%), Positives = 83/204 (40%), Gaps = 27/204 (13%)
Query: 27 GGSKYFRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYD-------- 78
GG K +T EH + E E ++ +++P EEE R +
Sbjct: 511 GGMKDVQTSKAAEH---DLEVASEEEQEREGSENNQPQVEEERKKHRNNEMEVSANIHDG 567
Query: 79 --SIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFR 136
AE D D IQK + + QQ+ N EY SSGP ++ +KS + R
Sbjct: 568 ATDDAEDDDDDDGLIQKRKSGETDHQQFPRKENKEYASSGPALQ----MKEVKSTEKEKR 623
Query: 137 SSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTE 196
+S+ S ++ V L+T +D S S E +++EG E++K +
Sbjct: 624 TSKESVNSPVF-----GKASLLTGGLLQVDDDSSLS---EIDEDEGRPTKKTSNEKNKVK 675
Query: 197 EDILRAALKYSNKKTGSNPTSASD 220
I ++ + T S+ T++ D
Sbjct: 676 NQI--QSMDDVDDLTQSSETASED 697
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 39.7 bits (91), Expect = 0.003
Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 26/220 (11%)
Query: 39 EHLTIEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQ 98
E L FE L + E +S SH +E+V L E H + ++ +L+K++++ +++
Sbjct: 637 ELLDKSFETLADQTEWQS---SHLFKYFQEVVQLWEAHQSELLVQELELEKRMEQHRQKH 693
Query: 99 RIVQQYHPSNNGEY-----QSSGPE------DDFESCLRNMKSQYEVFR---SSRLSSDA 144
+ Q ++ Q S E + + L+NMKS+YE F + +
Sbjct: 694 SLESQVQEAHLDRLLDQLRQQSDKETLAFHLEKVKDYLKNMKSRYECFHTLLTKEVMEYP 753
Query: 145 TVLTPNTESSCDLMTK--------TKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTE 196
++ S +++ ++ +G E ++ R+ +R++ ++
Sbjct: 754 AIMLKELNSYSSALSQYFFVREIFEQNLAGEVIFKFRQPEAHEKPSQKRVKKLRKKQGSK 813
Query: 197 EDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEM 236
ED+ R+ S+ + + ++ N E E+ F++ E+
Sbjct: 814 EDMTRSEESISSGTSTARSVEEVEEENDQEMES-FITEEV 852
>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
sapiens]
Length = 558
Score = 38.9 bits (89), Expect = 0.005
Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 8/163 (4%)
Query: 50 ESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIV-QQYHPSN 108
E+ +S H + D RER D + +++KD +K Q+EQER R Q PS
Sbjct: 348 EASHRDSHWKRHEQEDKPRARDQRERS-DRVWKREKDREKYSQREQERDRQQNDQNRPSE 406
Query: 109 NGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGND 168
GE + E ++ K +YE R V ++E + D K +S N
Sbjct: 407 KGEKEEKSKAK--EEHMKVRKERYENNDKYRDREKREVGVQSSERNQD----RKESSPNS 460
Query: 169 DSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKT 211
+ L+ E M M +ER++ + ++L ++ T
Sbjct: 461 RAKDKFLDQERSNKMRNMAKDKERNQEKPSNSESSLGAKHRLT 503
>gi|188497637 cell division cycle associated 7-like isoform 3 [Homo
sapiens]
Length = 408
Score = 36.6 bits (83), Expect = 0.024
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 127 NMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTS-------GNDDSTSLDLEWED 179
N S E F R D + T ++E SCD +S +D SL E E+
Sbjct: 18 NAPSDDEEFVGFR--DDVPMETLSSEESCDSFDSLESGKQVVESDLSDDGKASLVSEEEE 75
Query: 180 EEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSAS 219
+E ++ P R RS+ LR A ++ KK + P S
Sbjct: 76 DEEEDKATPRRSRSRRSSIGLRVAFQFPTKKLANKPDKNS 115
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 36.6 bits (83), Expect = 0.024
Identities = 51/235 (21%), Positives = 90/235 (38%), Gaps = 16/235 (6%)
Query: 36 SRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKE- 94
+ G+ E E ES++ E+P + E E V+ E ++ E + + +KE
Sbjct: 1856 AEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEA 1915
Query: 95 QERQRIVQQYHPSNNGEYQSSGPE-DDFESCLRNMKSQ----YEVFRSSRLSSDATVLTP 149
Q V+ E +S G E + E + + Q EV S +A +
Sbjct: 1916 QPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESE 1975
Query: 150 NTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNK 209
+ E + ++ +T+ G S D+E + EG M E ++ E D + A K +
Sbjct: 1976 DVE-ALEVEVETQEAEGEAQPESEDVEAPEAEG--EMQEAEEEAQPESDGVEAQPKSEGE 2032
Query: 210 -------KTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDS 257
+T A +S+G+E A+ + E G +P E D+
Sbjct: 2033 EAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDA 2087
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 36.6 bits (83), Expect = 0.024
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 49 VESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSN 108
++ G G+SH+ E + + ++ SI + +K DK+ ++EQ++++ Q+
Sbjct: 642 IDDQRGNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQK---RE 698
Query: 109 NGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGND 168
+++ S +D + R +S+ RS +S +S +K SG+D
Sbjct: 699 EKDFKFSSQDDRLK---RKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSD 755
Query: 169 DS--TSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNK 209
S +S + +E + P RS++ E R+ K S K
Sbjct: 756 SSGRSSSESPGSSKEKKAKK-PKHSRSRSVEKSQRSGKKASRK 797
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 36.6 bits (83), Expect = 0.024
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 49 VESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSN 108
++ G G+SH+ E + + ++ SI + +K DK+ ++EQ++++ Q+
Sbjct: 642 IDDQRGNLSGNSHKHKGEAKEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQK---RE 698
Query: 109 NGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGND 168
+++ S +D + R +S+ RS +S +S +K SG+D
Sbjct: 699 EKDFKFSSQDDRLK---RKRESERTFSRSGSISVKIIRHDSRQDSKKSTTKDSKKHSGSD 755
Query: 169 DS--TSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNK 209
S +S + +E + P RS++ E R+ K S K
Sbjct: 756 SSGRSSSESPGSSKEKKAKK-PKHSRSRSVEKSQRSGKKASRK 797
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 35.8 bits (81), Expect = 0.040
Identities = 31/150 (20%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 50 ESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNN 109
+ + G++ G + + + E +S +EK ++ D++ +++++R+ V +
Sbjct: 945 DEERGKTQGKHRKSFALDS--EGEEASQESSSEKDEEDDEEDEEDEDREEAVD----TTK 998
Query: 110 GEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDD 169
E + S ED+ ES + S+ ++ S +D+T + ++ SS + + S+S +
Sbjct: 999 KETEVSDGEDE-ES---DSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSS 1054
Query: 170 STSLDLEWEDEEGMNRMLPMRERSKTEEDI 199
S+S + EDEE R + S ++
Sbjct: 1055 SSSSESSSEDEEEEERPAALPSASPPPREV 1084
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 35.8 bits (81), Expect = 0.040
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 12/205 (5%)
Query: 53 EGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQK-EQERQRIVQQYHPSNNGE 111
+ ES G P ++ E D ++ D + K + E + H
Sbjct: 301 DSESEGPQKGPASDSETEDASRHKQKPESDDDSDRENKGEDTEMQNDSFHSDSHMDRKKF 360
Query: 112 YQSSGPEDDFESCLRNMKSQYEVFRSSRLSS-DATVLTPNTESSCDLMTKTKSTSGNDDS 170
+ S E++ + + + +++ A VL+ + + K++ S DDS
Sbjct: 361 HSSDSEEEEHKKQKMDSDEDEKEGEEEKVAKRKAAVLSDSEDEEKASAKKSRVVSDADDS 420
Query: 171 TSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWEND 230
D + ++ RE++ + A + S+KK SD +G E EN
Sbjct: 421 --------DSDAVSDKSGKREKTIASDSEEEAGKELSDKKNEEKDLFGSDSESGNEEENL 472
Query: 231 F--VSAEMDDNGNSEYSGFVNPVLE 253
+ E D E++GF LE
Sbjct: 473 IADIFGESGDEEEEEFTGFNQEDLE 497
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 35.4 bits (80), Expect = 0.053
Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 5/216 (2%)
Query: 50 ESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNN 109
+SD +S SS + D + S + K K + + SN+
Sbjct: 592 DSDSSDSSNSSD----SSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNS 647
Query: 110 GEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDD 169
+ + D + + S S SS + + ++ S D ++S+ +D
Sbjct: 648 SDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDS 707
Query: 170 STSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWEN 229
S S + D N S D ++ S+ SN + +SD S+ +
Sbjct: 708 SDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSS-DSSDSSDSSNSSDSSDSSDSSNSSD 766
Query: 230 DFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
S++ D+ +S S N SDS + +D
Sbjct: 767 SSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSD 802
Score = 34.3 bits (77), Expect = 0.12
Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 18/156 (11%)
Query: 107 SNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSG 166
SN+ + S D + +S S SSD++ + +++SS D + S+
Sbjct: 836 SNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSS-DSNESSNSSDS 894
Query: 167 NDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLE 226
+D S S D + D S D SN S +++SD+SN +
Sbjct: 895 SDSSNSSDSDSSDSSN----------SSDSSDS-------SNSSDSSESSNSSDNSNSSD 937
Query: 227 WENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHS 262
N S++ D+ NS S + SDS +S
Sbjct: 938 SSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNS 973
Score = 33.5 bits (75), Expect = 0.20
Identities = 26/129 (20%), Positives = 52/129 (40%)
Query: 137 SSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTE 196
+S SD++ + S D + S+ +D S S D + ++ + S +
Sbjct: 575 NSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSS 634
Query: 197 EDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSD 256
+ ++ SN S+ + +SD SN + S++ D+ +S S + + SD
Sbjct: 635 DSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSD 694
Query: 257 SGIRHSDTD 265
S +D
Sbjct: 695 SSNSSESSD 703
Score = 32.7 bits (73), Expect = 0.34
Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 4/165 (2%)
Query: 107 SNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSG 166
SN+ E S D +S + S S +S + + N+ S D + S+
Sbjct: 696 SNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDS 755
Query: 167 NDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLE 226
+D S S + D + + S + + + S+ + S+ +S S DS+
Sbjct: 756 SDSSDSSNSS--DSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSS 813
Query: 227 WENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRH--SDTDQQTR 269
+D S+ D+ NS S + + SDS SD+D R
Sbjct: 814 DSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNR 858
Score = 32.7 bits (73), Expect = 0.34
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 141 SSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDIL 200
SSD++ + + ESS + S S + DS+ + + N + ++
Sbjct: 876 SSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNS 935
Query: 201 RAALKYSNKKTGSNPTSASDDSNGLEWEN-----DFVSAEMDDNGNSEYSGFVNPVLELS 255
+ S+ S+ +++SD SN + N D S++ D+ NS S + + S
Sbjct: 936 SDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSS 995
Query: 256 DSGIRHSDTD 265
DS + +D
Sbjct: 996 DSSDSSNSSD 1005
Score = 32.3 bits (72), Expect = 0.44
Identities = 32/159 (20%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 107 SNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSG 166
SN+ + S D +S + + S SD++ ++ +S D + S+
Sbjct: 558 SNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSS----DSSNSSDSSDSSDSSDS 613
Query: 167 NDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLE 226
+D S S D + + + + +S + + + S+ SN +++SD S+ +
Sbjct: 614 SDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSD 673
Query: 227 WENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
+ S++ ++ +S S + E SDS SD+D
Sbjct: 674 SSDSSSSSDSSNSSDSSDSSDSSNSSESSDSS-DSSDSD 711
Score = 32.3 bits (72), Expect = 0.44
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 3/145 (2%)
Query: 114 SSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSL 173
SS D +S N S S SSD+ + ++ +S D + S+ ++ S S
Sbjct: 873 SSNSSDSSDSSDSNESSNSSDSSDSSNSSDSD--SSDSSNSSDSSDSSNSSDSSESSNSS 930
Query: 174 D-LEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFV 232
D D + + S + + + S+ + SN + +SD SN + +
Sbjct: 931 DNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSD 990
Query: 233 SAEMDDNGNSEYSGFVNPVLELSDS 257
S++ D+ +S S + + SDS
Sbjct: 991 SSDSSDSSDSSNSSDSSDSSDSSDS 1015
Score = 31.6 bits (70), Expect = 0.76
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 5/159 (3%)
Query: 107 SNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSG 166
SN+ + S D +S + S S SSD++ + +++SS + S S
Sbjct: 963 SNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSS 1022
Query: 167 NDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLE 226
N +S + D + + S + + + S+ + S+ +S S DS+
Sbjct: 1023 NSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSS--- 1079
Query: 227 WENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
+ S++ D+ NS S + + SDS +D
Sbjct: 1080 --DSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSD 1116
Score = 30.4 bits (67), Expect = 1.7
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 10/153 (6%)
Query: 114 SSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSL 173
SS D S + S S SSD++ + N+ S D + S+ +D S S
Sbjct: 1021 SSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSD-SSNSSDSSDSSDSSDSSDSSDSSDSS 1079
Query: 174 DL-EWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFV 232
D E D + + S + + S+ S+ + +SD SN + +
Sbjct: 1080 DSSESSDSSDSSNSSDSSDSSDSSDS--------SDSSDSSDSSDSSDSSNSSDSSDSSD 1131
Query: 233 SAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
S++ D+ NS S + + SDS +D
Sbjct: 1132 SSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSD 1164
Score = 30.4 bits (67), Expect = 1.7
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 3/158 (1%)
Query: 114 SSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTP--NTESSCDLMTKTKSTSGNDDST 171
SS D ES + S S SSD++ + N+ S D + S+ +D S
Sbjct: 1141 SSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSD 1200
Query: 172 SLDL-EWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWEND 230
S D + D + + S + + S+ + S+ +S S DS+ +D
Sbjct: 1201 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSD 1260
Query: 231 FVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTDQQT 268
S D++ + SG N SDS SD++ T
Sbjct: 1261 STSDSNDESDSQSKSGNGNNNGSDSDSDSEGSDSNHST 1298
Score = 30.0 bits (66), Expect = 2.2
Identities = 31/170 (18%), Positives = 65/170 (38%), Gaps = 4/170 (2%)
Query: 88 DKKIQKEQERQRIVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVL 147
D K ++ + + +NG + ++D + + S +S +
Sbjct: 506 DSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSD 565
Query: 148 TPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYS 207
+ +++SS + +S +D S S D + D + + S + + ++
Sbjct: 566 SSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSD----SSDSSD 621
Query: 208 NKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGFVNPVLELSDS 257
+K S S S DS+ +D S++ DN +S S + + SDS
Sbjct: 622 SKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDS 671
Score = 29.6 bits (65), Expect = 2.9
Identities = 33/152 (21%), Positives = 62/152 (40%), Gaps = 5/152 (3%)
Query: 114 SSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSL 173
SS D +S + S S SSD++ + +++SS D ++S+ +D S S
Sbjct: 1036 SSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSS-DSSDSSESSDSSDSSNSS 1094
Query: 174 DLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVS 233
D + + S D + S+ S+ + +SD SN + + S
Sbjct: 1095 DSSDSSDSSDSSDSSDSSDSSDSSDSSNS----SDSSDSSDSSDSSDSSNSSDSSDSSES 1150
Query: 234 AEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
++ D+ +S S + + SDS + +D
Sbjct: 1151 SDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSD 1182
Score = 28.9 bits (63), Expect = 4.9
Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 1/160 (0%)
Query: 107 SNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSG 166
S+N S+ + S N + S+ S+ + + S D + S+
Sbjct: 855 SSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDS 914
Query: 167 NDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKY-SNKKTGSNPTSASDDSNGL 225
+D S S D N S D ++ S+ + S+ +S S DSN
Sbjct: 915 SDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSS 974
Query: 226 EWENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
+ + S++ D+ +S S + SDS +D
Sbjct: 975 DSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSD 1014
Score = 28.9 bits (63), Expect = 4.9
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 3/154 (1%)
Query: 114 SSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSL 173
SS D +S + S S SSD++ + ++ESS D + S+ +D S S
Sbjct: 1045 SSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESS-DSSDSSNSSDSSDSSDSS 1103
Query: 174 DLEWEDEEGMNRMLPMRERSKTEEDILRAA--LKYSNKKTGSNPTSASDDSNGLEWENDF 231
D + + S D ++ SN S+ + +SD S+ + +
Sbjct: 1104 DSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSS 1163
Query: 232 VSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
S++ D+ +S S + + SDS +D
Sbjct: 1164 DSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSD 1197
Score = 28.5 bits (62), Expect = 6.4
Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 10/159 (6%)
Query: 107 SNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSG 166
SN+ + +S D + S +S SSD++ + +++SS D + S S
Sbjct: 798 SNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSS-DSSDGSDSDSS 856
Query: 167 NDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLE 226
N +S + D + + S + E S+ + S+ +S S DS+ +
Sbjct: 857 NRSDSSNSSDSSDSSDSSNSSDSSDSSDSNE---------SSNSSDSSDSSNSSDSDSSD 907
Query: 227 WENDFVSAEMDDNGNSEYSGFVNPVLELSDSGIRHSDTD 265
N S++ ++ +S S + SDS +D
Sbjct: 908 SSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSD 946
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 35.4 bits (80), Expect = 0.053
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 38/161 (23%)
Query: 65 TEEEIVDLRERHYDSIAEKQKDLDKKIQ-KEQERQRIVQQYHPSNNGEYQSSGPE----- 118
+EE+I L++ H +A K+++L KK+Q +E+E Q ++ + EY E
Sbjct: 474 SEEQIAKLQKLHEKELARKEQELTKKLQTREREFQEQMKVALEKSQSEYLKISQEKEQQE 533
Query: 119 ---------------DDFESCLRNMKSQYEVFRSSRLSSDATV---LTPNTESSCDLMTK 160
+ E+ LR+++ + E +R+ L ++++ L N S DL
Sbjct: 534 SLALEELELQKKAILTESENKLRDLQQEAETYRTRILELESSLEKSLQENKNQSKDL--- 590
Query: 161 TKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILR 201
++ LE E + + M E+ KTE + L+
Sbjct: 591 -----------AVHLEAEKNKHNKEITVMVEKHKTELESLK 620
>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
sapiens]
Length = 1158
Score = 34.7 bits (78), Expect = 0.090
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 100 IVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMT 159
+V S+ G ++GPE+ FES L + + RSS +S + NT + DL T
Sbjct: 459 LVSAVSNSSQGTTAAAGPEEKFESRLEDSCVEKLKTRSSDMSDGSDFEDVNTTTGTDLDT 518
Query: 160 KTKSTSGNDDSTSLDLEWEDEEGMNR 185
T +G+D + +D + + ++G +
Sbjct: 519 TT--GTGSDLDSDVDSDPDKDKGKGK 542
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 34.7 bits (78), Expect = 0.090
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 100 IVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMT 159
+V S+ G ++GPE+ FES L + + RSS +S + NT + DL T
Sbjct: 558 LVSAVSNSSQGTTAAAGPEEKFESRLEDSCVEKLKTRSSDMSDGSDFEDVNTTTGTDLDT 617
Query: 160 KTKSTSGNDDSTSLDLEWEDEEGMNR 185
T +G+D + +D + + ++G +
Sbjct: 618 TT--GTGSDLDSDVDSDPDKDKGKGK 641
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 34.7 bits (78), Expect = 0.090
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 100 IVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMT 159
+V S+ G ++GPE+ FES L + + RSS +S + NT + DL T
Sbjct: 558 LVSAVSNSSQGTTAAAGPEEKFESRLEDSCVEKLKTRSSDMSDGSDFEDVNTTTGTDLDT 617
Query: 160 KTKSTSGNDDSTSLDLEWEDEEGMNR 185
T +G+D + +D + + ++G +
Sbjct: 618 TT--GTGSDLDSDVDSDPDKDKGKGK 641
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 34.7 bits (78), Expect = 0.090
Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 13/200 (6%)
Query: 44 EFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQR---- 99
E E E + G++ + E ++R + E +KD DK+ +KEQ++++
Sbjct: 402 EKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREK 461
Query: 100 -IVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLM 158
++ + +S P + + R+ S E R SS + T T
Sbjct: 462 DRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT------- 514
Query: 159 TKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSA 218
K KS+ + + + E+ + + RER ++ + + +K N TS
Sbjct: 515 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 574
Query: 219 SDDSNGLEWENDFVSAEMDD 238
+ + E ++ VS E+DD
Sbjct: 575 KEKEHNKEPDSS-VSKEVDD 593
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 34.7 bits (78), Expect = 0.090
Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 13/200 (6%)
Query: 44 EFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQR---- 99
E E E + G++ + E ++R + E +KD DK+ +KEQ++++
Sbjct: 286 EKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREK 345
Query: 100 -IVQQYHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLM 158
++ + +S P + + R+ S E R SS + T T
Sbjct: 346 DRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT------- 398
Query: 159 TKTKSTSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSA 218
K KS+ + + + E+ + + RER ++ + + +K N TS
Sbjct: 399 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 458
Query: 219 SDDSNGLEWENDFVSAEMDD 238
+ + E ++ VS E+DD
Sbjct: 459 KEKEHNKEPDSS-VSKEVDD 477
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 34.3 bits (77), Expect = 0.12
Identities = 41/187 (21%), Positives = 69/187 (36%), Gaps = 20/187 (10%)
Query: 52 DEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQY--HPSNN 109
DE SSHR L ++ +E++++ D + + R R +++ H S+
Sbjct: 817 DEDSDDASSHR---------LHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSR 867
Query: 110 GEYQSSGPEDDFESCLRNMKS----QYEVF--RSSRLSSDATVLTPNTESSCDLMTKTKS 163
Y SS +SC +S Y + RS R S + + +S +K
Sbjct: 868 RSYSSSSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHK 927
Query: 164 TSGNDDSTSLDLEWEDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSN 223
S +DD SL + RERS++ ++ S K S T+A
Sbjct: 928 YSSSDDDYSLSCSQSRSRSRSH---TRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQR 984
Query: 224 GLEWEND 230
+ D
Sbjct: 985 SRSYSRD 991
>gi|196115290 glial fibrillary acidic protein isoform 2 [Homo
sapiens]
Length = 431
Score = 33.9 bits (76), Expect = 0.15
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 20/138 (14%)
Query: 86 DLDKKIQKEQERQRIVQQYHPSNNGEYQS-----------SGPEDDFESCLRNMKSQYEV 134
DL++KI+ +E R +++ H E Q + D + L+ +++QYE
Sbjct: 185 DLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEA 244
Query: 135 FRSSRL-------SSDATVLTPNTESSCDLMTKTKSTSGN--DDSTSLDLEWEDEEGMNR 185
SS + S LT + +L+ + K + + SL + E G N
Sbjct: 245 MASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNE 304
Query: 186 MLPMRERSKTEEDILRAA 203
L + R + E + AA
Sbjct: 305 SLERQMREQEERHVREAA 322
>gi|4503979 glial fibrillary acidic protein isoform 1 [Homo sapiens]
Length = 432
Score = 33.9 bits (76), Expect = 0.15
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 20/138 (14%)
Query: 86 DLDKKIQKEQERQRIVQQYHPSNNGEYQS-----------SGPEDDFESCLRNMKSQYEV 134
DL++KI+ +E R +++ H E Q + D + L+ +++QYE
Sbjct: 185 DLERKIESLEEEIRFLRKIHEEEVRELQEQLARQQVHVELDVAKPDLTAALKEIRTQYEA 244
Query: 135 FRSSRL-------SSDATVLTPNTESSCDLMTKTKSTSGN--DDSTSLDLEWEDEEGMNR 185
SS + S LT + +L+ + K + + SL + E G N
Sbjct: 245 MASSNMHEAEEWYRSKFADLTDAAARNAELLRQAKHEANDYRRQLQSLTCDLESLRGTNE 304
Query: 186 MLPMRERSKTEEDILRAA 203
L + R + E + AA
Sbjct: 305 SLERQMREQEERHVREAA 322
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 33.9 bits (76), Expect = 0.15
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 63 PLTEEEIVDLRERHYDSIAEKQKDLDKKI-QKEQE-RQRIVQQYHPSNNGEYQSSGPEDD 120
P+ +E+I + + A++ K+ + KI QKE+E R+R+ ++ + Q
Sbjct: 305 PIIKEQIESKKRK-----AQEWKEKEAKIRQKEEENRKRLEEEQRIKEERKKQKEEERKR 359
Query: 121 FESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDE 180
E K+ + R +S + +L + + + K + N+ SL+ D+
Sbjct: 360 REKEYEEKKNIVKQEREQLISKEKIILREDASQQLIISSALKKSGYNNKHLSLEDISNDK 419
Query: 181 EGMNRMLPMRERSKTEEDILRAALKYSNKK 210
+ + L + E SK +ED+L ++ SN K
Sbjct: 420 GDIAKNL-VDENSKKQEDVLLWLVEESNMK 448
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 33.9 bits (76), Expect = 0.15
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 8/150 (5%)
Query: 63 PLTEEEIVDLRERHYDSIAEKQKDLDKKI-QKEQE-RQRIVQQYHPSNNGEYQSSGPEDD 120
P+ +E+I + + A++ K+ + KI QKE+E R+R+ ++ + Q
Sbjct: 305 PIIKEQIESKKRK-----AQEWKEKEAKIRQKEEENRKRLEEEQRIKEERKKQKEEERKR 359
Query: 121 FESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDE 180
E K+ + R +S + +L + + + K + N+ SL+ D+
Sbjct: 360 REKEYEEKKNIVKQEREQLISKEKIILREDASQQLIISSALKKSGYNNKHLSLEDISNDK 419
Query: 181 EGMNRMLPMRERSKTEEDILRAALKYSNKK 210
+ + L + E SK +ED+L ++ SN K
Sbjct: 420 GDIAKNL-VDENSKKQEDVLLWLVEESNMK 448
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 33.5 bits (75), Expect = 0.20
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 66 EEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQSSGPEDDFESCL 125
E+E RE+ + E+Q++ +K+++KEQE+QR +++ + E + E L
Sbjct: 520 EKEQEQEREKEREKDRERQQEKEKELEKEQEKQREMEKERKQEKEKELERQKEKEKE--L 577
Query: 126 RNMKSQ-------------YEVFRSSRLSSDATVLTPNTESSCD-----LMTKTKSTSGN 167
+ MK Q E + + V +E+SC+ + T+ S
Sbjct: 578 QKMKEQEKECELEKEREKLEEKIEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSE 637
Query: 168 DDSTSLDLEWEDEEG 182
++T + E E E G
Sbjct: 638 KEATPVVHETEPESG 652
Score = 31.2 bits (69), Expect = 0.99
Identities = 23/123 (18%), Positives = 51/123 (41%)
Query: 44 EFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQQ 103
E E +E ++ + E+E R++ + +K K+ +K+ + E+ER+++ ++
Sbjct: 540 EKEKELEKEQEKQREMEKERKQEKEKELERQKEKEKELQKMKEQEKECELEKEREKLEEK 599
Query: 104 YHPSNNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKS 163
P ++ SC + + + S+R +AT + TE +
Sbjct: 600 IEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSEKEATPVVHETEPESGSQPRPAV 659
Query: 164 TSG 166
SG
Sbjct: 660 LSG 662
Score = 28.9 bits (63), Expect = 4.9
Identities = 10/29 (34%), Positives = 23/29 (79%)
Query: 71 DLRERHYDSIAEKQKDLDKKIQKEQERQR 99
++RER + E++K+L+K+ ++E+E++R
Sbjct: 503 EIREREREKEREREKELEKEQEQEREKER 531
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 33.1 bits (74), Expect = 0.26
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 43 IEFENLVESDEGESPGSSHRPLTEEEIVDLRERHYDSIAEKQKDLDKKIQKEQERQRIVQ 102
+E E +ES+ GE S +EEE E +S E ++D +++++ EQE +
Sbjct: 85 VEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEMEDEQESE---A 141
Query: 103 QYHPSNNGEYQSSGPEDDFES 123
+ GE ++ G E + ES
Sbjct: 142 EEDNQEEGESEAEG-ETEAES 161
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 32.7 bits (73), Expect = 0.34
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 27/232 (11%)
Query: 13 LRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDL 72
+R E QR ++ R ++G LT +L E+++ + G S T E+ +
Sbjct: 586 VRDEESESQRKARSRQARQSRRSTQGVTLT----DLQEAEK--TIGRSRSTRTREQENEE 639
Query: 73 RERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQ-----SSGPEDDFESCLRN 127
+E+ +K+K +KK + Q+Y + + YQ S+ S L
Sbjct: 640 KEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSSSLST 699
Query: 128 MKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRML 187
M S ++ SS+L+ + L T + +TK G + E++EG ++
Sbjct: 700 MSS--SLYASSQLNRPNS-LVGITSAYSRGITKENEREG-------EKREEEKEGEDKSQ 749
Query: 188 P--MRERSKTEEDILRAALKYSNKKTGSNPTSASDD----SNGLEWENDFVS 233
P +RER + E + + + + N D SN E + D +S
Sbjct: 750 PKSIRERRRPREKRRSTGVSFWTQDSDENEQEQQSDTEEGSNKKETQTDSIS 801
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 32.7 bits (73), Expect = 0.34
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 27/232 (11%)
Query: 13 LRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIVDL 72
+R E QR ++ R ++G LT +L E+++ + G S T E+ +
Sbjct: 673 VRDEESESQRKARSRQARQSRRSTQGVTLT----DLQEAEK--TIGRSRSTRTREQENEE 726
Query: 73 RERHYDSIAEKQKDLDKKIQKEQERQRIVQQYHPSNNGEYQ-----SSGPEDDFESCLRN 127
+E+ +K+K +KK + Q+Y + + YQ S+ S L
Sbjct: 727 KEKEEKEKQDKEKQEEKKESETSREDEYKQKYSRTYDETYQRYRPVSTSSSTTPSSSLST 786
Query: 128 MKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEWEDEEGMNRML 187
M S ++ SS+L+ + L T + +TK G + E++EG ++
Sbjct: 787 MSS--SLYASSQLNRPNS-LVGITSAYSRGITKENEREG-------EKREEEKEGEDKSQ 836
Query: 188 P--MRERSKTEEDILRAALKYSNKKTGSNPTSASDD----SNGLEWENDFVS 233
P +RER + E + + + + N D SN E + D +S
Sbjct: 837 PKSIRERRRPREKRRSTGVSFWTQDSDENEQEQQSDTEEGSNKKETQTDSIS 888
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,874,636
Number of Sequences: 37866
Number of extensions: 510896
Number of successful extensions: 2818
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 2457
Number of HSP's gapped (non-prelim): 394
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.