Guide to the Human Genome
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Name: GBP2 Sequence: fasta or formatted (591aa) NCBI GI: 38327558
Description:

guanylate binding protein 2, interferon-inducible

Referenced in:

Interferon
Additional Guanine Nucleotide-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         39           2
 C cysteine            1.5          9           2
 D aspartate           5.8         34           2
 E glutamate           9.6         57           3
 F phenylalanine       3.9         23           2
 G glycine             4.6         27           2
 H histidine           1.5          9           1
 I isoleucine          4.9         29           1
 K lysine              9.8         58           2
 L leucine            11.3         67           2
 M methionine          2.9         17           2
 N asparagine          4.2         25           2
 P proline             4.1         24           1
 Q glutamine           5.9         35           2
 R arginine            3.6         21           2
 S serine              6.8         40           2
 T threonine           4.1         24           1
 V valine              5.6         33           4
 W tryptophan          1.0          6           1
 Y tyrosine            2.4         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanylate binding protein 2, interferon-inducible [H... 
GBP1                  0.776   guanylate binding protein 1, interferon-inducible, ...
GBP3                  0.759   guanylate binding protein 3 
GBP5                  0.622   guanylate-binding protein 5 
GBP5                  0.622   guanylate-binding protein 5 
GBP7                  0.545   guanylate binding protein 4-like 
GBP4                  0.531   guanylate binding protein 4 
GBP6                  0.526   guanylate binding protein family, member 6 
ATL3                  0.052   atlastin 3 
ATL1                  0.045   atlastin GTPase 1 isoform b 
ATL1                  0.045   atlastin GTPase 1 isoform b 
ATL1                  0.045   atlastin GTPase 1 isoform a 
LOC729933             0.043   PREDICTED: similar to guanylate-binding protein 5 [...
ATL2                  0.037   atlastin GTPase 2 isoform 2 
ATL2                  0.037   atlastin GTPase 2 isoform 1 
LOC283767             0.026   golgi autoantigen, golgin subfamily a-like 
CCDC46                0.025   coiled-coil domain containing 46 isoform a 
LOC727832             0.025   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.025   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.025   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.025   inner centromere protein antigens 135/155kDa isofor...
LOC440243             0.024   PREDICTED: Putative golgin subfamily A member 6-lik...
CIT                   0.024   citron 
CGNL1                 0.024   cingulin-like 1 
C18orf34              0.024   hypothetical protein LOC374864 isoform 1 
LOC400352             0.024   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.024   PREDICTED: similar to Putative golgin subfamily A m...
LOC645202             0.024   PREDICTED: hypothetical protein LOC645202 
TMEM191C              0.023   PREDICTED: hypothetical protein 
TMEM191C              0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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