Guide to the Human Genome
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Name: CLNK Sequence: fasta or formatted (428aa) NCBI GI: 193083221
Description:

mast cell immunoreceptor signal transducer

Referenced in:

Neutrophils, Eosinophils, and Basophils

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         15           2
 C cysteine            1.2          5           1
 D aspartate           5.8         25           3
 E glutamate           7.0         30           2
 F phenylalanine       3.3         14           1
 G glycine             3.7         16           2
 H histidine           3.0         13           1
 I isoleucine          4.9         21           2
 K lysine              7.5         32           2
 L leucine             7.9         34           2
 M methionine          1.6          7           1
 N asparagine          5.4         23           1
 P proline             9.6         41           3
 Q glutamine           5.8         25           2
 R arginine            7.5         32           1
 S serine              8.2         35           4
 T threonine           5.4         23           2
 V valine              4.2         18           1
 W tryptophan          1.4          6           1
 Y tyrosine            3.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mast cell immunoreceptor signal transducer 
LCP2                  0.118   lymphocyte cytosolic protein 2 
BLNK                  0.100   B-cell linker isoform 2 
BLNK                  0.094   B-cell linker isoform 1 
SH2D6                 0.052   SH2 domain containing 6 
NCK1                  0.030   NCK adaptor protein 1 
PIK3R1                0.029   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.029   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.029   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PTPN11                0.028   protein tyrosine phosphatase, non-receptor type 11 [...
GRAP                  0.028   GRB2-related adaptor protein 
INPP5D                0.025   SH2 containing inositol phosphatase isoform b 
INPP5D                0.025   SH2 containing inositol phosphatase isoform a 
PIK3R2                0.025   phosphoinositide-3-kinase, regulatory subunit 2 (beta...
NCK2                  0.024   NCK adaptor protein 2 isoform A 
NCK2                  0.024   NCK adaptor protein 2 isoform A 
PLCG1                 0.023   phospholipase C, gamma 1 isoform a 
PLCG1                 0.023   phospholipase C, gamma 1 isoform b 
PIK3R3                0.023   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
PIK3R3                0.023   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
CRKL                  0.022   v-crk sarcoma virus CT10 oncogene homolog (avian)-lik...
DAPP1                 0.021   dual adaptor of phosphotyrosine and 3-phosphoinosit...
INPPL1                0.020   inositol polyphosphate phosphatase-like 1 
KDM6B                 0.019   lysine (K)-specific demethylase 6B 
BTK                   0.019   Bruton agammaglobulinemia tyrosine kinase 
SHC3                  0.017   src homology 2 domain-containing transforming prote...
LMOD2                 0.017   leiomodin 2 (cardiac) 
LOC284297             0.016   hypothetical protein LOC284297 
VAV2                  0.016   vav 2 guanine nucleotide exchange factor isoform 1 ...
VAV2                  0.016   vav 2 guanine nucleotide exchange factor isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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