Guide to the Human Genome
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Name: GBP5 Sequence: fasta or formatted (586aa) NCBI GI: 16418425
Description:

guanylate-binding protein 5

Referenced in:

Additional Guanine Nucleotide-binding Proteins

Other entries for this name:
alt mRNA [586aa] guanylate-binding protein 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         45           2
 C cysteine            1.7         10           1
 D aspartate           5.5         32           2
 E glutamate           8.5         50           2
 F phenylalanine       3.6         21           2
 G glycine             3.6         21           2
 H histidine           2.2         13           1
 I isoleucine          4.8         28           1
 K lysine              7.5         44           4
 L leucine            11.9         70           3
 M methionine          2.4         14           2
 N asparagine          5.1         30           2
 P proline             3.8         22           1
 Q glutamine           9.0         53           2
 R arginine            3.6         21           1
 S serine              5.6         33           2
 T threonine           4.6         27           2
 V valine              6.0         35           4
 W tryptophan          0.9          5           1
 Y tyrosine            2.0         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanylate-binding protein 5 
GBP5                  1.000   guanylate-binding protein 5 
GBP1                  0.660   guanylate binding protein 1, interferon-inducible, ...
GBP3                  0.658   guanylate binding protein 3 
GBP2                  0.628   guanylate binding protein 2, interferon-inducible [H...
GBP7                  0.500   guanylate binding protein 4-like 
GBP4                  0.496   guanylate binding protein 4 
GBP6                  0.495   guanylate binding protein family, member 6 
ATL3                  0.051   atlastin 3 
LOC729933             0.046   PREDICTED: similar to guanylate-binding protein 5 [...
ATL2                  0.041   atlastin GTPase 2 isoform 2 
ATL2                  0.041   atlastin GTPase 2 isoform 1 
ATL1                  0.038   atlastin GTPase 1 isoform b 
ATL1                  0.038   atlastin GTPase 1 isoform b 
ATL1                  0.038   atlastin GTPase 1 isoform a 
MLL2                  0.026   myeloid/lymphoid or mixed-lineage leukemia 2 
NUMA1                 0.025   nuclear mitotic apparatus protein 1 
PLEC1                 0.025   plectin 1 isoform 11 
PLEC1                 0.025   plectin 1 isoform 10 
PLEC1                 0.025   plectin 1 isoform 8 
PLEC1                 0.025   plectin 1 isoform 7 
PLEC1                 0.025   plectin 1 isoform 6 
PLEC1                 0.025   plectin 1 isoform 3 
PLEC1                 0.025   plectin 1 isoform 2 
PLEC1                 0.025   plectin 1 isoform 1 
INCENP                0.025   inner centromere protein antigens 135/155kDa isofor...
LOC100133758          0.024   PREDICTED: hypothetical protein, partial 
INCENP                0.024   inner centromere protein antigens 135/155kDa isofor...
GOLGA4                0.024   golgi autoantigen, golgin subfamily a, 4 
FOXP2                 0.023   forkhead box P2 isoform I 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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