Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 188528677
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188528677 tRNA splicing endonuclease 15 isoform 2 [Homo
sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188528677 tRNA splicing endonuclease 15 isoform 2 [Homo sapiens] 273 4e-74
gi|24308390 tRNA splicing endonuclease 15 isoform 1 [Homo sapiens] 253 3e-68
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 35 0.021
gi|53829365 potassium channel tetramerisation domain containing ... 31 0.24
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 29 0.90
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 29 0.90
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 29 0.90
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 29 0.90
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 28 1.5
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 28 1.5
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 28 2.0
gi|119395750 keratin 1 [Homo sapiens] 28 2.6
gi|5174703 mitogen-activated protein kinase kinase kinase 7 inte... 28 2.6
gi|41281798 mitogen-activated protein kinase kinase kinase 7 int... 28 2.6
gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo sapi... 28 2.6
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|239751010 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 27 3.4
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 27 3.4
gi|150378447 zinc and ring finger 3 [Homo sapiens] 27 3.4
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 27 3.4
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 27 3.4
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 27 3.4
gi|223278393 protein phosphatase 1, regulatory (inhibitor) subun... 27 4.5
gi|13899269 SRY-box 7 [Homo sapiens] 27 4.5
gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo ... 27 4.5
gi|239752189 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo ... 27 4.5
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 27 4.5
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5
>gi|188528677 tRNA splicing endonuclease 15 isoform 2 [Homo sapiens]
Length = 129
Score = 273 bits (697), Expect = 4e-74
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV
Sbjct: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
Query: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIF 120
YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIF
Sbjct: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRIF 120
Query: 121 LLEDDIHVS 129
LLEDDIHVS
Sbjct: 121 LLEDDIHVS 129
>gi|24308390 tRNA splicing endonuclease 15 isoform 1 [Homo sapiens]
Length = 171
Score = 253 bits (646), Expect = 3e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV
Sbjct: 1 MEERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
Query: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRI 119
YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRI
Sbjct: 61 YVAFLVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEGLQTVVPTPITASLSHNRI 119
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 34.7 bits (78), Expect = 0.021
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 15 GLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLE 48
GLGPGG G G+ + APE AW GT +Y E
Sbjct: 1453 GLGPGGWWGCGEPSLGAAKAPEGAWGGTSREYKE 1486
>gi|53829365 potassium channel tetramerisation domain containing 2
[Homo sapiens]
Length = 263
Score = 31.2 bits (69), Expect = 0.24
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 11 PGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPK 45
P +GLG GG G GDGGG P G P+
Sbjct: 8 PAMAGLGGGGGSGVGDGGGPVRGPPSPRPAGPTPR 42
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 29.3 bits (64), Expect = 0.90
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 7 SEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
+E G SG GPGG G G GGA + A DA +G + L ++ T V
Sbjct: 779 AEGAAGGSGGGPGGAEGGGVTGGARA-ALSDAELGRWAELLSPLDESRASITSV 831
Score = 27.7 bits (60), Expect = 2.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 6 DSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
D P+PG SG G G G GA S +P+ A +G P
Sbjct: 723 DPGPSPGTSG----GKAAAGAGAGASSRSPKQARLGELP 757
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 29.3 bits (64), Expect = 0.90
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 7 SEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
+E G SG GPGG G G GGA + A DA +G + L ++ T V
Sbjct: 1048 AEGAAGGSGGGPGGAEGGGVTGGARA-ALSDAELGRWAELLSPLDESRASITSV 1100
Score = 27.7 bits (60), Expect = 2.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 6 DSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
D P+PG SG G G G GA S +P+ A +G P
Sbjct: 992 DPGPSPGTSG----GKAAAGAGAGASSRSPKQARLGELP 1026
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 29.3 bits (64), Expect = 0.90
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 7 SEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIGDATQV 60
+E G SG GPGG G G GGA + A DA +G + L ++ T V
Sbjct: 740 AEGAAGGSGGGPGGAEGGGVTGGARA-ALSDAELGRWAELLSPLDESRASITSV 792
Score = 27.7 bits (60), Expect = 2.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 6 DSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
D P+PG SG G G G GA S +P+ A +G P
Sbjct: 684 DPGPSPGTSG----GKAAAGAGAGASSRSPKQARLGELP 718
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 29.3 bits (64), Expect = 0.90
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 22 RGFGDGGGAPSWAPEDAWMGTH 43
RG G GGGAP+W P A H
Sbjct: 515 RGAGRGGGAPAWQPASAPPAPH 536
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 1.5
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 12 GCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMEL 52
G +G G GG G G GGG S AP P+ L M +L
Sbjct: 50 GGNGAGGGGAGGAGGGGGGGSRAP--------PEELSMFQL 82
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 28.5 bits (62), Expect = 1.5
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 15 GLGPGGVRGFGDGGGAPSWAPEDAW 39
G G GG G G GG P W P AW
Sbjct: 432 GGGSGGGGGVGGAGGGP-WGPAPAW 455
Score = 25.8 bits (55), Expect = 9.9
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 12 GCSGLGPGGVRGFGDG--GGAPSWAP 35
G SG G GGV G G G G AP+W P
Sbjct: 433 GGSG-GGGGVGGAGGGPWGPAPAWCP 457
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 28.1 bits (61), Expect = 2.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 5 GDSEPTPGCSGLGPGGV 21
G P PG SG+GPGGV
Sbjct: 64 GSLAPLPGSSGVGPGGV 80
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 27.7 bits (60), Expect = 2.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 12 GCSGLGPGGVRGFGDGGG 29
G G+G GG GFG GGG
Sbjct: 110 GGGGIGGGGFGGFGSGGG 127
>gi|5174703 mitogen-activated protein kinase kinase kinase 7
interacting protein 1 isoform alpha [Homo sapiens]
Length = 504
Score = 27.7 bits (60), Expect = 2.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 6 DSEPTPGCSGLGPGGVRGFG-DGGGAPSWAPEDAWM 40
D P SG+G R + DG G S PED+W+
Sbjct: 19 DDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWL 54
>gi|41281798 mitogen-activated protein kinase kinase kinase 7
interacting protein 1 isoform beta [Homo sapiens]
Length = 462
Score = 27.7 bits (60), Expect = 2.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 6 DSEPTPGCSGLGPGGVRGFG-DGGGAPSWAPEDAWM 40
D P SG+G R + DG G S PED+W+
Sbjct: 19 DDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWL 54
>gi|38158022 DEAH (Asp-Glu-Ala-His) box polypeptide 34 [Homo
sapiens]
Length = 1143
Score = 27.7 bits (60), Expect = 2.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 65 LVYLDLMESKSWHEVNCVGLPELQLICLVGTEIEGEG 101
L ++ L+E+ + VNCV +P LQ + L ++ G
Sbjct: 879 LSFVSLLETNKPYLVNCVRIPALQSLLLFSRSLDTNG 915
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 27.3 bits (59), Expect = 3.4
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 5 GDSEPTPGCSGLGPGGVRGFGDGGGAPSWAPEDAWM 40
GD P +G PGG RG G GG P AW+
Sbjct: 74 GDGGGLPRRAGAEPGG-RGGGSGGTMPGGRRAAAWL 108
>gi|239751010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 27.3 bits (59), Expect = 3.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 11 PGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHP 44
PG S GG G G GGGA W G P
Sbjct: 81 PGDSSHSRGGRWGVGGGGGAALWRQRTVEAGCSP 114
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 27.3 bits (59), Expect = 3.4
Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 4 RGDSEPTPGCSGLG--PGGVRGFGD-GGGAPSWAP 35
RG P G SGLG GG G G GGGAP P
Sbjct: 92 RGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREP 126
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 27.3 bits (59), Expect = 3.4
Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 4 RGDSEPTPGCSGLG--PGGVRGFGD-GGGAPSWAP 35
RG P G SGLG GG G G GGGAP P
Sbjct: 92 RGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPRREP 126
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 27.3 bits (59), Expect = 3.4
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 9 PTPGCSG-----LGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYL 47
P+ G +G LGP G G GG P G HP +L
Sbjct: 623 PSAGAAGSSTLFLGPHLYEGSGPAGGEPQSGSSQGLYGLHPDHL 666
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 27.3 bits (59), Expect = 3.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 10 TPGCSGLGPGGVRGFGDGGG-----APSWAPEDAWM 40
+PG G GPGG G GD G S A E+ W+
Sbjct: 1733 SPGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWL 1768
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 27.3 bits (59), Expect = 3.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 10 TPGCSGLGPGGVRGFGDGGG-----APSWAPEDAWM 40
+PG G GPGG G GD G S A E+ W+
Sbjct: 1768 SPGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWL 1803
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 27.3 bits (59), Expect = 3.4
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 5 GDSEPTPG----CSGLGPGGVRGFGDGGGAP--SWAPEDAWMGTHPKYLEMMELDIGDAT 58
G S P PG SG G GG +G GAP + AP+D G +L ++L + A
Sbjct: 412 GPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFL-ALDLTVPAAA 470
Query: 59 QVYVAF 64
++ F
Sbjct: 471 TIWAPF 476
>gi|223278393 protein phosphatase 1, regulatory (inhibitor)
subunit 3G [Homo sapiens]
Length = 358
Score = 26.9 bits (58), Expect = 4.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 21 VRGFGDGGGAPSWAPEDAWMGTHP 44
V+G GDGGGA DA +G P
Sbjct: 35 VQGGGDGGGASETPSPDAQLGDRP 58
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 26.9 bits (58), Expect = 4.5
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 2 EERGDSEP------TPGCSGLGPGGVRGFGDGGGAPSWAPEDAWMGTHPKYLEMMELDIG 55
E+RG+ P GC GP G G GGG PS D + P EM LD+
Sbjct: 160 EDRGEYSPGTALPSLRGCYHEGPAG----GGGGGTPS--SVDTYPYGLPTPPEMSPLDVL 213
Query: 56 DATQVY 61
+ Q +
Sbjct: 214 EPEQTF 219
>gi|239757704 PREDICTED: hypothetical protein XP_002345526 [Homo
sapiens]
Length = 67
Score = 26.9 bits (58), Expect = 4.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 17 GPGGVRGFGDGGGAPSWAPEDA 38
GPG G GDGGGA P+ A
Sbjct: 33 GPGPGSGDGDGGGAEQLPPQTA 54
>gi|239752189 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 26.9 bits (58), Expect = 4.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 17 GPGGVRGFGDGGGAPSWAPEDA 38
GPG G GDGGGA P+ A
Sbjct: 33 GPGPGSGDGDGGGAEQLPPQTA 54
>gi|239746712 PREDICTED: hypothetical protein XP_002343817 [Homo
sapiens]
Length = 67
Score = 26.9 bits (58), Expect = 4.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 17 GPGGVRGFGDGGGAPSWAPEDA 38
GPG G GDGGGA P+ A
Sbjct: 33 GPGPGSGDGDGGGAEQLPPQTA 54
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 3 ERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWA 34
E EP P + PGG G G G GA WA
Sbjct: 70 EEPPEEPAPA---IAPGGSGGGGGGCGAQHWA 98
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 3 ERGDSEPTPGCSGLGPGGVRGFGDGGGAPSWA 34
E EP P + PGG G G G GA WA
Sbjct: 70 EEPPEEPAPA---IAPGGSGGGGGGCGAQHWA 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,314,469
Number of Sequences: 37866
Number of extensions: 317691
Number of successful extensions: 1648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 112
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.