Search of human proteins with 188528628

Search of human proteins with 188528628

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo
sapiens]
         (783 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo s...  1528   0.0  
gi|9506689 exosome component 4 [Homo sapiens]                          47   7e-05
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa...    43   0.001
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]     39   0.024
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]          35   0.21 
gi|31415882 exosome component 8 [Homo sapiens]                         35   0.27 
gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]      34   0.60 
gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo ...    33   0.78 
gi|239755507 PREDICTED: hypothetical protein [Homo sapiens]            33   0.78 
gi|239750021 PREDICTED: hypothetical protein [Homo sapiens]            33   0.78 
gi|239744334 PREDICTED: hypothetical protein XP_002343120 [Homo ...    33   0.78 
gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo ...    33   1.0  
gi|6031189 neuro-oncological ventral antigen 1 isoform 3 [Homo s...    33   1.0  
gi|4758410 fragile X mental retardation syndrome related protein...    33   1.0  
gi|147902746 MEX3A protein [Homo sapiens]                              32   1.7  
gi|47716512 mex-3 homolog B [Homo sapiens]                             32   2.3  
gi|38202224 discs large-associated protein 2 [Homo sapiens]            32   2.3  
gi|194097365 FtsJ homolog 3 [Homo sapiens]                             32   2.3  
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]     32   2.3  
gi|229577000 ecotropic viral integration site 5-like isoform 1 [...    32   3.0  
gi|21687020 ecotropic viral integration site 5-like isoform 2 [H...    32   3.0  
gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens]                  32   3.0  
gi|24308527 stereocilin [Homo sapiens]                                 31   3.9  
gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens]       31   3.9  
gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens]       31   3.9  
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ...    30   6.6  
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ...    30   6.6  
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ...    30   6.6  
gi|5730027 KH domain containing, RNA binding, signal transductio...    30   6.6  
gi|61835172 fragile X mental retardation-related protein 1 isofo...    30   6.6  

>gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo
           sapiens]
          Length = 783

 Score = 1528 bits (3957), Expect = 0.0
 Identities = 783/783 (100%), Positives = 783/783 (100%)

Query: 1   MAACRYCCSCLRLRPLSDGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISS 60
           MAACRYCCSCLRLRPLSDGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISS
Sbjct: 1   MAACRYCCSCLRLRPLSDGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISS 60

Query: 61  GKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRRE 120
           GKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRRE
Sbjct: 61  GKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRRE 120

Query: 121 IGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLS 180
           IGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLS
Sbjct: 121 IGTSDKEILTSRIIDRSIRPLFPAGYFYDTQVLCNLLAVDGVNEPDVLAINGASVALSLS 180

Query: 181 DIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQD 240
           DIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQD
Sbjct: 181 DIPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQD 240

Query: 241 FCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFT 300
           FCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFT
Sbjct: 241 FCHAIKVGVKYTQQIIQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFT 300

Query: 301 DYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYKRCD 360
           DYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYKRCD
Sbjct: 301 DYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIESFNVVAKEVFRSIVLNEYKRCD 360

Query: 361 GRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKD 420
           GRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKD
Sbjct: 361 GRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKD 420

Query: 421 KNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESN 480
           KNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESN
Sbjct: 421 KNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESN 480

Query: 481 GSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYN 540
           GSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYN
Sbjct: 481 GSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLTDILGIEDYN 540

Query: 541 GDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRASR 600
           GDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRASR
Sbjct: 541 GDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAIQQASVAKKEILQIMNKTISKPRASR 600

Query: 601 KENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEA 660
           KENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEA
Sbjct: 601 KENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPTPSAMHEA 660

Query: 661 RDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHP 720
           RDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHP
Sbjct: 661 RDFITEICKDDQEQQLEFGAVYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHP 720

Query: 721 TALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSPATTVVRTLNDRSSIVMGEPISQSSS 780
           TALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSPATTVVRTLNDRSSIVMGEPISQSSS
Sbjct: 721 TALGLEVGQEIQVKYFGRDPADGRMRLSRKVLQSPATTVVRTLNDRSSIVMGEPISQSSS 780

Query: 781 NSQ 783
           NSQ
Sbjct: 781 NSQ 783


>gi|9506689 exosome component 4 [Homo sapiens]
          Length = 245

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 29/230 (12%)

Query: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAING 417
           R DGR    LR +   + +F    GSA  ++G T+ L  V       G ++         
Sbjct: 13  RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRA-------RA 65

Query: 418 IKDKNFM-LHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVI-----PRDFPFTIR 471
           + D+  +   Y    ++T E  +    +R+    G    +     I     PR     I 
Sbjct: 66  LPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRS---QID 122

Query: 472 VTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDPEKGEIEDYRLLT 531
           +  +VL+++G +  A     +LA++D+G+P+   V   + G V           D   L 
Sbjct: 123 IYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV-----------DGTALA 171

Query: 532 DILGIEDYNGDMDFKIA--GTNKGITALQADIKLPGIPIKIVMEAIQQAS 579
           D+  +E+  G     +A    +  I  L+ D +L    ++ V+EA  QA+
Sbjct: 172 DLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLEAAAQAA 221


>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
           sapiens]
          Length = 272

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 25/173 (14%)

Query: 362 RDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIK--------SDQVIT 413
           RD T LR V     +     GSA  + G T+VLC V+      G +          +   
Sbjct: 31  RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90

Query: 414 AINGIKDKNFMLHYEFPPYA-TNEIGKVTGLNRRELGHGALA-EKALYPVI-----PRDF 466
           A+ G      +  +   P+A         G   REL   ALA ++AL P +     PR  
Sbjct: 91  ALRG----RLLCDFRRAPFAGRRRRAPPGGCEEREL---ALALQEALEPAVRLGRYPRA- 142

Query: 467 PFTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLVTKTDP 519
              + V++ +LE  GS+  A+    +LAL D+GV +   V G  + L     P
Sbjct: 143 --QLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAP 193


>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
          Length = 659

 Score = 38.5 bits (88), Expect = 0.024
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 17/114 (14%)

Query: 567 PIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVV------------ETVQVPL 614
           PI +V    +  ++AK+EIL       S  RASR +NGP +             TVQV +
Sbjct: 275 PIFVVTGRKEDVAMAKREILSAAEH-FSMIRASRNKNGPALGGLSCSPNLPGQTTVQVRV 333

Query: 615 SKRAK--FVGPGGYNLKKLQAETGVTISQVDEETFSVFAPT--PSAMHEARDFI 664
             R     VGP G  +K++Q +T   I     +   VF  T  P  +  AR+ I
Sbjct: 334 PYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 387


>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
          Length = 492

 Score = 35.4 bits (80), Expect = 0.21
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 11/142 (7%)

Query: 577 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETG 636
           +A  ++K  L+   + +   R++  E G     V +P       +G GG  + +LQ ETG
Sbjct: 4   EAPDSRKRPLETPPEVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETG 63

Query: 637 VTISQVDEETF--------SVFAPTPSAMHEARDFITEICKDDQEQQL--EFGAVYTATI 686
            TI     + F         +   T  A++    FI E  ++  +     E   +     
Sbjct: 64  ATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQT 123

Query: 687 TEIRDTGVMVKL-YPNMTAVLL 707
           T   D     KL  PN TA L+
Sbjct: 124 TMNPDRAKQAKLIVPNSTAGLI 145


>gi|31415882 exosome component 8 [Homo sapiens]
          Length = 276

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 18/45 (40%), Positives = 23/45 (51%)

Query: 353 LNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV 397
           L E  R DGR+L   R  +  +    T  GSAL + G T V+C V
Sbjct: 18  LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGV 62


>gi|21361576 zinc finger, CCHC domain containing 17 [Homo sapiens]
          Length = 241

 Score = 33.9 bits (76), Expect = 0.60
 Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 681 VYTATITEIRDTGVMVKLYPNMTAVLLHNTQLDQRKIKHPTALGLEVGQEIQVKYFGRDP 740
           ++   +  + D G  +K+       L+H T +   ++  P+ + ++VG ++ VK  GR+ 
Sbjct: 18  IFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI-VDVGDKVWVKLIGREM 76

Query: 741 ADGRMRLS 748
            + R+++S
Sbjct: 77  KNDRIKVS 84


>gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo
           sapiens]
          Length = 483

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 11/138 (7%)

Query: 581 AKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTIS 640
           ++K  L+   +  S  R +  E+G     V +P       +G GG  + +LQ ETG TI 
Sbjct: 25  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

Query: 641 QVDEETF--------SVFAPTPSAMHEARDFITEICKDDQEQ--QLEFGAVYTATITEIR 690
               + F         +   T  A++    FI E  ++  +   + E  ++     T   
Sbjct: 85  LSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNP 144

Query: 691 DTGVMVK-LYPNMTAVLL 707
           D    VK + PN TA L+
Sbjct: 145 DRIKQVKIIVPNSTAGLI 162


>gi|239755507 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 51  LGNRKLEI--SSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQK 105
           LG R L I  S G+L    DG  VV  G    +VT VS+ +P   Q    ++ Y Q+
Sbjct: 59  LGPRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQR 115


>gi|239750021 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 188

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 51  LGNRKLEI--SSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQK 105
           LG R L I  S G+L    DG  VV  G    +VT VS+ +P   Q    ++ Y Q+
Sbjct: 59  LGPRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQR 115


>gi|239744334 PREDICTED: hypothetical protein XP_002343120 [Homo
           sapiens]
          Length = 188

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 51  LGNRKLEI--SSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPSQFMPLVVDYRQK 105
           LG R L I  S G+L    DG  VV  G    +VT VS+ +P   Q    ++ Y Q+
Sbjct: 59  LGPRGLLIFLSDGRLIGRGDGGTVVIDGGRVTLVTVVSEARPQAHQLQLCMLIYHQR 115


>gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo
           sapiens]
          Length = 507

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 581 AKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTIS 640
           ++K  L+   +  S  R +  E+G     V +P       +G GG  + +LQ ETG TI 
Sbjct: 25  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

Query: 641 QVDEETF--------SVFAPTPSAMHEARDFITE 666
               + F         +   T  A++    FI E
Sbjct: 85  LSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAE 118


>gi|6031189 neuro-oncological ventral antigen 1 isoform 3 [Homo
           sapiens]
          Length = 181

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 581 AKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTIS 640
           ++K  L+   +  S  R +  E+G     V +P       +G GG  + +LQ ETG TI 
Sbjct: 25  SRKRPLEAPPEAGSTKRTNTGEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIK 84

Query: 641 QVDEETF--------SVFAPTPSAMHEARDFITE 666
               + F         +   T  A++    FI E
Sbjct: 85  LSKSKDFYPGTTERVCLIQGTVEALNAVHGFIAE 118


>gi|4758410 fragile X mental retardation syndrome related protein 2
           [Homo sapiens]
          Length = 673

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 579 SVAKKEILQIMNKTISKPRASRKENGPVVE---TVQVPLSKRAKFVGPGGYNLKKLQAET 635
           S+  K +L   N+  +K   + K+     +   TV+  L   A  +G  G N+++ +   
Sbjct: 201 SLRTKLLLMSRNEEATKHLETSKQLAAAFQEEFTVREDLMGLA--IGTHGANIQQARKVP 258

Query: 636 GVTISQVDEET--FSVFAPTPSAMHEARDFI 664
           GVT  ++ EET  F ++  TP A  +AR ++
Sbjct: 259 GVTAIELGEETCTFRIYGETPEACRQARSYL 289


>gi|147902746 MEX3A protein [Homo sapiens]
          Length = 520

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 567 PIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGP-----------VVETVQVPLS 615
           P+ +V    +  + A++EI+       S  RASR ++G            V   V+VP  
Sbjct: 175 PVFMVTGRREDVATARREIISAAEH-FSMIRASRNKSGAAFGVAPALPGQVTIRVRVPYR 233

Query: 616 KRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPT--PSAMHEARDFI 664
                VGP G  +K++Q +T   I     +   VF  T  P  +  AR+ I
Sbjct: 234 VVGLVVGPKGATIKRIQQQTNTYIITPSRDRDPVFEITGAPGNVERAREEI 284


>gi|47716512 mex-3 homolog B [Homo sapiens]
          Length = 569

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 17/114 (14%)

Query: 567 PIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKEN--------------GPVVETVQV 612
           P+ +V    +  ++A++EI+       S  RASR +N              G     V+V
Sbjct: 109 PVFVVTGRKEDVAMARREIISAAEH-FSMIRASRNKNTALNGAVPGPPNLPGQTTIQVRV 167

Query: 613 PLSKRAKFVGPGGYNLKKLQAETGVTISQVDEETFSVFAPT--PSAMHEARDFI 664
           P       VGP G  +K++Q +T   I     +   VF  T  P  +  AR+ I
Sbjct: 168 PYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREEI 221


>gi|38202224 discs large-associated protein 2 [Homo sapiens]
          Length = 975

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 6/123 (4%)

Query: 452 ALAEKALYPVIPRDFPFTIRVTSE-VLESNGSSSMASACGGSLALMDSGVPISSAVAGVA 510
           AL   A    +P     ++R + + +L S     + S C  S+ + DS  P         
Sbjct: 596 ALETAAAQRHLPESQSSSVRTSDKAILVSKAEELLKSRCS-SIGIQDSEFPEHQPYPRSD 654

Query: 511 IGLVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKI 570
           +   T +D E   + +Y  +   + +ED      FK   +N    A+QAD++L G P  I
Sbjct: 655 VETATDSDTESRGLREYHSVG--VQVEDEKRHGRFK--RSNSVTAAVQADLELEGFPGHI 710

Query: 571 VME 573
             E
Sbjct: 711 TTE 713


>gi|194097365 FtsJ homolog 3 [Homo sapiens]
          Length = 847

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 18  DGPFLLPRRDRALTQLQVRALWSSAGSRAVAVDLGNRKLEISSGKL 63
           + P L+P  ++A+ Q +   LW S GS A   D  +  LEIS  +L
Sbjct: 508 ENPLLVPLEEKAVLQEEQANLWFSKGSFAGIEDDADEALEISQAQL 553


>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
          Length = 651

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 35/113 (30%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 567 PIKIVMEAIQQASVAKKEILQ------IMNKTISKP-----RASRKENGPVVETVQVPLS 615
           P+ IV    +   +AK+EIL       I+  T SK       A    N P   T+QV + 
Sbjct: 222 PVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVP 281

Query: 616 KRAK--FVGPGGYNLKKLQAETGVTISQVDEETFSVFAPT--PSAMHEARDFI 664
            R     VGP G  +K++Q  T   I     +   VFA T  P  +  AR+ I
Sbjct: 282 YRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEI 334


>gi|229577000 ecotropic viral integration site 5-like isoform 1
           [Homo sapiens]
          Length = 805

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 448 LGHGALAEKALYPVIPRDFPFTIRVTSEVLESNGSS 483
           +G GA  + ALYP+ PRD  F  R+     +S GSS
Sbjct: 753 VGVGAALQDALYPLSPRDARFFRRLERPAKDSEGSS 788


>gi|21687020 ecotropic viral integration site 5-like isoform 2 [Homo
           sapiens]
          Length = 794

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 448 LGHGALAEKALYPVIPRDFPFTIRVTSEVLESNGSS 483
           +G GA  + ALYP+ PRD  F  R+     +S GSS
Sbjct: 742 VGVGAALQDALYPLSPRDARFFRRLERPAKDSEGSS 777


>gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens]
          Length = 1008

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 182 IPWNGPVGAVRIGIIDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQ 238
           + W  P+ A   G  D EY +    K  S  T ++V  GAP   +  L+ +   + Q
Sbjct: 472 LSWREPIPAGAPGANDTEYEIRYYEKGQSEQTYSMVKTGAPTVTVTNLKPATRYVFQ 528


>gi|24308527 stereocilin [Homo sapiens]
          Length = 1775

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 9/82 (10%)

Query: 400  DSLESGIKSDQVITAINGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALY 459
            + L+S +  D  I  ++ + +++ ML  E    A  ++  +T L++      ALAE+AL 
Sbjct: 1254 NGLDSKLLLDLPIQLMDRLSNESIMLVVELVQRAPEQLLALTPLHQ-----AALAERALQ 1308

Query: 460  PVIPRDFPFTIRVTSEVLESNG 481
             + P++ P    V+ EVLE+ G
Sbjct: 1309 NLAPKETP----VSGEVLETLG 1326


>gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens]
          Length = 345

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 578 ASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGV 637
           A +A K    I+N   + P  S+    PV   + VP S+    +G GG  +K+++  TG 
Sbjct: 105 AMIAYKFEEDIINSMSNSPATSKP---PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161

Query: 638 TI 639
            +
Sbjct: 162 QV 163


>gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens]
          Length = 371

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 578 ASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGV 637
           A +A K    I+N   + P  S+    PV   + VP S+    +G GG  +K+++  TG 
Sbjct: 105 AMIAYKFEEDIINSMSNSPATSKP---PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161

Query: 638 TI 639
            +
Sbjct: 162 QV 163


>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
           [Homo sapiens]
          Length = 464

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 604 GPVVET-VQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE 644
           GP++ T V +P       +G GG  +K+++ E+G +I ++DE
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASI-KIDE 425


>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
           [Homo sapiens]
          Length = 463

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 604 GPVVET-VQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE 644
           GP++ T V +P       +G GG  +K+++ E+G +I ++DE
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASI-KIDE 425


>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
           [Homo sapiens]
          Length = 464

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 604 GPVVET-VQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE 644
           GP++ T V +P       +G GG  +K+++ E+G +I ++DE
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASI-KIDE 425


>gi|5730027 KH domain containing, RNA binding, signal transduction
           associated 1 [Homo sapiens]
          Length = 443

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 6/45 (13%)

Query: 602 ENGPVVETVQVPLSKRAKF------VGPGGYNLKKLQAETGVTIS 640
           +N  + E V +P+ +  KF      +GP G  +K+LQ ETG  IS
Sbjct: 152 KNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKIS 196


>gi|61835172 fragile X mental retardation-related protein 1 isoform
           c [Homo sapiens]
          Length = 536

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 621 VGPGGYNLKKLQAETGVTISQVDEE--TFSVFAPTPSAMHEARDFI 664
           +G  G N+++ +   GVT  ++DE+  TF ++  +  A+ +AR F+
Sbjct: 149 IGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFL 194


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,921,562
Number of Sequences: 37866
Number of extensions: 1132865
Number of successful extensions: 3049
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3011
Number of HSP's gapped (non-prelim): 60
length of query: 783
length of database: 18,247,518
effective HSP length: 110
effective length of query: 673
effective length of database: 14,082,258
effective search space: 9477359634
effective search space used: 9477359634
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.