Guide to the Human Genome
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Name: LOC100289415 Sequence: fasta or formatted (188aa) NCBI GI: 239750021
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {188aa} PREDICTED: hypothetical protein XP_002343120
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         16           2
 C cysteine            2.1          4           1
 D aspartate           4.8          9           1
 E glutamate           3.7          7           1
 F phenylalanine       2.7          5           1
 G glycine            16.0         30           2
 H histidine           1.6          3           1
 I isoleucine          3.7          7           1
 K lysine              0.5          1           1
 L leucine             9.6         18           2
 M methionine          2.7          5           2
 N asparagine          0.5          1           1
 P proline             7.4         14           4
 Q glutamine           5.3         10           1
 R arginine           10.6         20           2
 S serine              4.8          9           2
 T threonine           2.7          5           1
 V valine              9.0         17           2
 W tryptophan          3.2          6           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293222          1.000   PREDICTED: hypothetical protein 
LOC100289415          1.000   PREDICTED: hypothetical protein XP_002343120 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.027   PREDICTED: hypothetical protein LOC80164 
PNPT1                 0.022   polyribonucleotide nucleotidyltransferase 1 
HS6ST3                0.019   PREDICTED: heparan sulfate 6-O-sulfotransferase 3 [...
LOC100134002          0.019   PREDICTED: hypothetical protein 
HS6ST3                0.019   heparan sulfate 6-O-sulfotransferase 3 
ANKRD13D              0.016   ankyrin repeat domain 13 family, member D 
LOC100288302          0.016   PREDICTED: hypothetical protein XP_002343738 
VWCE                  0.016   von Willebrand factor C and EGF domains 
LOC100130084          0.011   PREDICTED: hypothetical protein 
LOC100130084          0.011   PREDICTED: hypothetical protein 
LOC100130084          0.011   PREDICTED: hypothetical protein 
BCAM                  0.011   basal cell adhesion molecule isoform 1 precursor [Ho...
PDIA5                 0.011   protein disulfide isomerase A5 
KIF26A                0.011   kinesin family member 26A 
LOC100130692          0.008   PREDICTED: hypothetical protein 
LOC100292712          0.008   PREDICTED: hypothetical protein 
LOC100133263          0.008   PREDICTED: hypothetical protein 
LOC100130692          0.008   PREDICTED: hypothetical protein 
LOC100291454          0.008   PREDICTED: hypothetical protein XP_002346871 
LOC100133263          0.008   PREDICTED: hypothetical protein 
LOC100130692          0.008   PREDICTED: hypothetical protein 
LOC100288120          0.008   PREDICTED: hypothetical protein XP_002342713 
LOC100133263          0.008   PREDICTED: hypothetical protein 
KLRG2                 0.008   killer cell lectin-like receptor subfamily G, member...
PRKCE                 0.008   protein kinase C, epsilon 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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