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Search of human proteins with 188219579
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
(587 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 1215 0.0
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 1198 0.0
gi|35493801 ring finger protein 19 [Homo sapiens] 722 0.0
gi|35493782 ring finger protein 19 [Homo sapiens] 722 0.0
gi|38045938 ring finger protein 144 [Homo sapiens] 113 4e-25
gi|50284696 IBR domain containing 2 [Homo sapiens] 103 6e-22
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 99 1e-20
gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo sa... 93 6e-19
gi|5453557 ariadne homolog 2 [Homo sapiens] 90 7e-18
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 89 1e-17
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 78 2e-14
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 78 2e-14
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 78 2e-14
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 78 2e-14
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 78 2e-14
gi|109150431 ring finger protein 31 [Homo sapiens] 71 3e-12
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 69 1e-11
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 69 1e-11
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 62 1e-09
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 62 1e-09
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens] 58 3e-08
gi|169790973 parkin isoform 3 [Homo sapiens] 56 8e-08
gi|169790971 parkin isoform 2 [Homo sapiens] 56 8e-08
gi|169790969 parkin isoform 1 [Homo sapiens] 56 8e-08
gi|22749145 ring finger protein 217 [Homo sapiens] 55 2e-07
gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens] 50 4e-06
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 50 6e-06
gi|239751227 PREDICTED: hypothetical protein XP_002347761 [Homo ... 49 1e-05
gi|48255913 tripartite motif-containing 16 [Homo sapiens] 49 1e-05
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 47 4e-05
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 1215 bits (3143), Expect = 0.0
Identities = 587/587 (100%), Positives = 587/587 (100%)
Query: 1 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA 60
MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA
Sbjct: 1 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA 60
Query: 61 AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 120
AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP
Sbjct: 61 AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 120
Query: 121 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA 180
LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA
Sbjct: 121 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA 180
Query: 181 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 240
DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH
Sbjct: 181 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 240
Query: 241 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGS 300
CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGS
Sbjct: 241 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGS 300
Query: 301 CNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGI 360
CNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGI
Sbjct: 301 CNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVGI 360
Query: 361 SLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSV 420
SLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSV
Sbjct: 361 SLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVSV 420
Query: 421 GIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPSI 480
GIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPSI
Sbjct: 421 GIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPSI 480
Query: 481 GESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLEV 540
GESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLEV
Sbjct: 481 GESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLEV 540
Query: 541 QADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRFSMIHA 587
QADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRFSMIHA
Sbjct: 541 QADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRFSMIHA 587
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 1198 bits (3100), Expect = 0.0
Identities = 581/582 (99%), Positives = 581/582 (99%), Gaps = 1/582 (0%)
Query: 1 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA 60
MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA
Sbjct: 1 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA 60
Query: 61 AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 120
AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP
Sbjct: 61 AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 120
Query: 121 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA 180
LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA
Sbjct: 121 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA 180
Query: 181 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 240
DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH
Sbjct: 181 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 240
Query: 241 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP-DDIKPCPRCSAYIIKMNDG 299
CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP DDIKPCPRCSAYIIKMNDG
Sbjct: 241 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSAYIIKMNDG 300
Query: 300 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG 359
SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG
Sbjct: 301 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG 360
Query: 360 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS 419
ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS
Sbjct: 361 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS 420
Query: 420 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS 479
VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS
Sbjct: 421 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS 480
Query: 480 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE 539
IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE
Sbjct: 481 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE 540
Query: 540 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDR 581
VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDR
Sbjct: 541 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDR 582
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 722 bits (1864), Expect = 0.0
Identities = 349/480 (72%), Positives = 396/480 (82%), Gaps = 15/480 (3%)
Query: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 176
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 130 IECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 189
Query: 177 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTE 236
L+L+D LM KYEEFMLRR+L +DPDCRWCPAPDCGYAVIA+GCASCPKLTC REGC TE
Sbjct: 190 LILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTE 249
Query: 237 FCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP--DDIKPCPRCSAYII 294
FCYHCKQIWHPNQTCD ARQ+RAQ+LR+RT +S +SY QESG DDIKPCPRC+AYII
Sbjct: 250 FCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYII 309
Query: 295 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLI 354
KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTL+
Sbjct: 310 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLV 369
Query: 355 GAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPV 414
GAPVGI+LIAGIAIPAM+IGIPVYVGRKIH+RYEG+ SKHKRNLAI GGVTLSVI SPV
Sbjct: 370 GAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGVTLSVIVSPV 429
Query: 415 IAAVSVGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDD-----GPITVA 469
+AAV+VGIGVPIMLAYVYGVVPISLCR GGCGVS NGKGV+IEFD+++ G T
Sbjct: 430 VAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAV 489
Query: 470 DAW---RALKNPSIGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGG 526
D A NPSIGE S+ GLT LS SGS D + ++ SETAS AL+G +++G
Sbjct: 490 DTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGS 549
Query: 527 ILSSGK-GKYSRLEVQADVQKEIF----PKDTASLGAISDNASTRAMAGSIISSYNPQDR 581
+ S ++RLEVQADVQKE + T SLG +SDNAST+AMAGSI++SY P D+
Sbjct: 550 LSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDK 609
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 722 bits (1864), Expect = 0.0
Identities = 349/480 (72%), Positives = 396/480 (82%), Gaps = 15/480 (3%)
Query: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 176
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 130 IECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 189
Query: 177 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTE 236
L+L+D LM KYEEFMLRR+L +DPDCRWCPAPDCGYAVIA+GCASCPKLTC REGC TE
Sbjct: 190 LILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTE 249
Query: 237 FCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP--DDIKPCPRCSAYII 294
FCYHCKQIWHPNQTCD ARQ+RAQ+LR+RT +S +SY QESG DDIKPCPRC+AYII
Sbjct: 250 FCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYII 309
Query: 295 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLI 354
KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTL+
Sbjct: 310 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLV 369
Query: 355 GAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPV 414
GAPVGI+LIAGIAIPAM+IGIPVYVGRKIH+RYEG+ SKHKRNLAI GGVTLSVI SPV
Sbjct: 370 GAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGVTLSVIVSPV 429
Query: 415 IAAVSVGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDD-----GPITVA 469
+AAV+VGIGVPIMLAYVYGVVPISLCR GGCGVS NGKGV+IEFD+++ G T
Sbjct: 430 VAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAV 489
Query: 470 DAW---RALKNPSIGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGG 526
D A NPSIGE S+ GLT LS SGS D + ++ SETAS AL+G +++G
Sbjct: 490 DTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGS 549
Query: 527 ILSSGK-GKYSRLEVQADVQKEIF----PKDTASLGAISDNASTRAMAGSIISSYNPQDR 581
+ S ++RLEVQADVQKE + T SLG +SDNAST+AMAGSI++SY P D+
Sbjct: 550 LSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDK 609
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 113 bits (283), Expect = 4e-25
Identities = 74/269 (27%), Positives = 111/269 (41%), Gaps = 22/269 (8%)
Query: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISES-RVPISCPECS----ERLN 171
V C LCL P E+ + C C CL+ Y+ L I E ISCP+ + L
Sbjct: 18 VSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 77
Query: 172 PHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCERE 231
++I ++A +M +Y++ R + DP WCPA C + +
Sbjct: 78 ENEIECMVA-AEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCK 136
Query: 232 GCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSA 291
C+ EFC CK WHP Q C + TS ++ E IK CP+C
Sbjct: 137 ACRMEFCSTCKASWHPGQGC-----PETMPITFLPGETSA-AFKMEEDDAPIKRCPKCKV 190
Query: 292 YIIKMNDGSCNHMTCAVCGCEFCWLCMKEISD----LHYLSPSGCTFWGKKPWSRKKKIL 347
YI + D C M C C FCW C++ + D +HY C K + ++
Sbjct: 191 YIER--DEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHY-DKGPCR---NKLGHSRASVI 244
Query: 348 WQLGTLIGAPVGISLIAGIAIPAMVIGIP 376
W ++G G L+ +A P +++ P
Sbjct: 245 WHRTQVVGIFAGFGLLLLVASPFLLLATP 273
>gi|50284696 IBR domain containing 2 [Homo sapiens]
Length = 303
Score = 103 bits (256), Expect = 6e-22
Identities = 74/284 (26%), Positives = 115/284 (40%), Gaps = 24/284 (8%)
Query: 107 AEGGGPG----AEEVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISES-RVPI 161
AE PG A + C LCL ++ L C C CL+ Y++L I E PI
Sbjct: 14 AENPTPGDLAPAPLITCKLCLCEQSLDKMTTLQECQCIFCTACLKQYMQLAIREGCGSPI 73
Query: 162 SCPE--CSERLNPHDIRLLLADP-PLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAY 218
+CP+ C + + P Y+ R + DP WCP DC
Sbjct: 74 TCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTWCPVADCQTVCPVA 133
Query: 219 GCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQES 278
+ E C +FC CK WH +C + +Q + + T+H + E+
Sbjct: 134 SSDPGQPVLVECPSCHLKFCSCCKDAWHAEVSC-----RDSQPIVLPTEHRALFGTDAEA 188
Query: 279 GPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISD---LHYLSPSGCTFW 335
IK CP C Y I+ N+G C M C C FCW C++ + + L + C
Sbjct: 189 ---PIKQCPVCRVY-IERNEG-CAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCR-- 241
Query: 336 GKKPWSRKKKILWQLGTLIGAPVGISLIAGIAIPAMVIGIPVYV 379
K + ++W ++G VG+ +IA + P +++ P +
Sbjct: 242 -NKLGHSRASVMWNRTQVVGILVGLGIIALVTSPLLLLASPCII 284
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 99.0 bits (245), Expect = 1e-20
Identities = 62/212 (29%), Positives = 95/212 (44%), Gaps = 23/212 (10%)
Query: 114 AEEVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRV--PISCPE--CSER 169
A+++ C +C + P L C H+ C C YL +I E + ISCP C
Sbjct: 181 AQDMPCQICYLNYPNSYFTGL-ECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDIL 239
Query: 170 LNPHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAV-IAYGCASCPKLTC 228
++ + + L+ D + KY+ + ++ + +WCPAPDC + V + Y A + C
Sbjct: 240 VDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKVQYPDAKPVRCKC 299
Query: 229 EREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPR 288
R +FC++C + WH C + L+ K S + K CP+
Sbjct: 300 GR-----QFCFNCGENWHDPVKC--------KWLKKWIKKCDDDSETSNWIAANTKECPK 346
Query: 289 CSAYIIKMNDGSCNHMTC--AVCGCEFCWLCM 318
C I K DG CNHM C C EFCW+C+
Sbjct: 347 CHVTIEK--DGGCNHMVCRNQNCKAEFCWVCL 376
>gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo
sapiens]
Length = 1089
Score = 93.2 bits (230), Expect = 6e-19
Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 119 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVP-ISCP--ECSERLNPHDI 175
C +C+ + P + C H CR C +L L+I E I CP +C + L P DI
Sbjct: 333 CDICMCSISVFEDPVDMPCGHDFCRGCWESFLNLKIQEGEAHNIFCPAYDCFQ-LVPVDI 391
Query: 176 RLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAV--------------IAYGCA 221
+ + +Y +F ++ ++ ++P +WCP P C AV +++
Sbjct: 392 IESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTPGCDRAVRLTKQGSNTSGSDTLSFPLL 451
Query: 222 SCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPD 281
P + C G FC+ C H C + + ++ + G+S E +
Sbjct: 452 RAPAVDC---GKGHLFCWECLGEAHEPCDCQTWKNWLQKITEMKPEELVGVSEAYEDAAN 508
Query: 282 DI------KPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKE 320
+ KPC C + I K N+G CNHM CA C +FCW+C++E
Sbjct: 509 CLWLLTNSKPCANCKSPIQK-NEG-CNHMQCAKCKYDFCWICLEE 551
>gi|5453557 ariadne homolog 2 [Homo sapiens]
Length = 493
Score = 89.7 bits (221), Expect = 7e-18
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 30/208 (14%)
Query: 122 CLVRLPPERAPRLLS--CPHRSCRDCLRHYLRLEISES-RVPISC--PECSERLNPHDIR 176
C V + R LLS C H+ CR C + + + + V +SC +C R +
Sbjct: 139 CAVCMQFVRKENLLSLACQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVF 198
Query: 177 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTE 236
LL + L KY ++ R Y+ S + CP DC VI ++ C R C
Sbjct: 199 PLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPM-VIRVQEPRARRVQCNR--CNEV 255
Query: 237 FCYHCKQIWHPNQTCDMARQ------QRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCS 290
FC+ C+Q++H C R+ ++T + HT K CP+C+
Sbjct: 256 FCFKCRQMYHAPTDCATIRKWLTKCADDSETANYISAHT--------------KDCPKCN 301
Query: 291 AYIIKMNDGSCNHMTCAVCGCEFCWLCM 318
I K +G CNHM C+ C +FCW+C+
Sbjct: 302 ICIEK--NGGCNHMQCSKCKHDFCWMCL 327
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 89.0 bits (219), Expect = 1e-17
Identities = 63/217 (29%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 119 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRV-PISCP--ECSERLNPHDI 175
CP+C+ L + L C H C+ C YL I ++ V +CP +C + I
Sbjct: 2070 CPVCVSPLGCDDDLPSLCCMHYCCKSCWNEYLTTRIEQNLVLNCTCPIADCPAQPTGAFI 2129
Query: 176 RLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPD-CGYAVIAYG------CASCPKLTC 228
R +++ P ++ KYE+ +LR Y+ S + WC P C + G C+ C +C
Sbjct: 2130 RAIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRILCRQGLGCGTTCSKCGWASC 2189
Query: 229 EREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPR 288
C ++ H +Q D ++ ++KH + L K CP
Sbjct: 2190 FN--CSFPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKHLAKLIS---------KRCPS 2238
Query: 289 CSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLH 325
C A I K N+G C HMTCA C FCW C+K H
Sbjct: 2239 CQAPIEK-NEG-CLHMTCAKCNHGFCWRCLKSWKPNH 2273
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 78.2 bits (191), Expect = 2e-14
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 119 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVP-ISCPE--CSERLNPHDI 175
C +C L C H C+ CL+ Y ++I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 176 RLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQT 235
+ L+ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELV-EAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 236 EFCYHCKQIWHPNQTCDMARQQ----RAQTLRV--RTKHTSGLSYGQ------------- 276
FC C+ +H C + ++ R + L+ K YG+
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 277 ESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 322
E + K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 78.2 bits (191), Expect = 2e-14
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 119 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVP-ISCPE--CSERLNPHDI 175
C +C L C H C+ CL+ Y ++I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 176 RLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQT 235
+ L+ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELV-EAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 236 EFCYHCKQIWHPNQTCDMARQQ----RAQTLRV--RTKHTSGLSYGQ------------- 276
FC C+ +H C + ++ R + L+ K YG+
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 277 ESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 322
E + K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 78.2 bits (191), Expect = 2e-14
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 119 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVP-ISCPE--CSERLNPHDI 175
C +C L C H C+ CL+ Y ++I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 176 RLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQT 235
+ L+ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELV-EAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 236 EFCYHCKQIWHPNQTCDMARQQ----RAQTLRV--RTKHTSGLSYGQ------------- 276
FC C+ +H C + ++ R + L+ K YG+
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 277 ESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 322
E + K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 78.2 bits (191), Expect = 2e-14
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 119 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVP-ISCPE--CSERLNPHDI 175
C +C L C H C+ CL+ Y ++I + +V ++CPE C P +
Sbjct: 94 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 153
Query: 176 RLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQT 235
+ L+ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 154 KELV-EAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 208
Query: 236 EFCYHCKQIWHPNQTCDMARQQ----RAQTLRV--RTKHTSGLSYGQ------------- 276
FC C+ +H C + ++ R + L+ K YG+
Sbjct: 209 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 268
Query: 277 ESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 322
E + K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 269 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 312
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 78.2 bits (191), Expect = 2e-14
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 29/226 (12%)
Query: 119 CPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVP-ISCPE--CSERLNPHDI 175
C +C L C H C+ CL+ Y ++I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 176 RLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQT 235
+ L+ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELV-EAELFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 236 EFCYHCKQIWHPNQTCDMARQQ----RAQTLRV--RTKHTSGLSYGQ------------- 276
FC C+ +H C + ++ R + L+ K YG+
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 277 ESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 322
E + K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 70.9 bits (172), Expect = 3e-12
Identities = 69/284 (24%), Positives = 102/284 (35%), Gaps = 51/284 (17%)
Query: 118 ECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRV-PISCPECSERLNPHDIR 176
EC +C LP R L SC C DC R + + + E + + CP C D +
Sbjct: 698 ECAVCGWALPHNRMQALTSCECTICPDCFRQHFTIALKEKHITDMVCPACGRPDLTDDTQ 757
Query: 177 LL------------LADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGC-ASC 223
LL +P + + + L DP WC G+ A+C
Sbjct: 758 LLSYFSTLDIQLRESLEPDAYALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATC 817
Query: 224 PKLTCEREGCQTEFCYHCKQIW---HPNQTCDMARQQRAQTLRVRTKHTSGLS-YGQESG 279
P+ C FC CK+ W H ++C+ Q + + GL+ Y QE+G
Sbjct: 818 PQ-------CHQTFCVRCKRQWEEQHRGRSCE--DFQNWKRMNDPEYQAQGLAMYLQENG 868
Query: 280 PDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEI--------------SDLH 325
D CP+C + + G C H C C +FC C LH
Sbjct: 869 ID----CPKCK-FSYALARGGCMHFHCTQCRHQFCSGCYNAFYAKNKCPEPNCRVKKSLH 923
Query: 326 YLSPSGCTFWGKKPWS--RKKKILWQLGTLIGA--PVGISLIAG 365
P C F+ + W+ R +K+L + P G + G
Sbjct: 924 GHHPRDCLFY-LRDWTALRLQKLLQDNNVMFNTEPPAGARAVPG 966
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 68.9 bits (167), Expect = 1e-11
Identities = 84/332 (25%), Positives = 111/332 (33%), Gaps = 95/332 (28%)
Query: 55 EPPPPAAQPPPAPA---PAAAQGPPPEAL----------PAEPAAE----AEAEAAAAAA 97
EP PP P P P A PPP P P E A EA A
Sbjct: 127 EPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPA 186
Query: 98 EPGFDDEEAAEGGGP--------------------------------GAEEVECPLCLVR 125
D+EE A G E ECP+C
Sbjct: 187 SYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSV 246
Query: 126 LPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCP------ECSERLNPHDIRLLL 179
L P A L C H CR+CL+ +R + +SCP CS +L +I+ LL
Sbjct: 247 LAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLLEREIKALL 303
Query: 180 ADPPLMHKYEEFM-----------LRRYLASDPDCR-WCPAPDCGYAVIAYGCASCPKLT 227
Y+ F+ Y PDC+ WC D V + C C +
Sbjct: 304 TP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFTCPVCFHVN 356
Query: 228 CEREGCQTEFCYHCKQIWHPNQTCDMARQQ---RAQTLRVRTKHTSGLSYGQESGPDDIK 284
C CK I H C ++ RAQ + T L + G +
Sbjct: 357 ----------CLLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQG--EAM 403
Query: 285 PCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWL 316
CP+C +++ DG C+ + C VC E CW+
Sbjct: 404 RCPQCQ-IVVQKKDG-CDWIRCTVCHTEICWV 433
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 68.9 bits (167), Expect = 1e-11
Identities = 84/332 (25%), Positives = 111/332 (33%), Gaps = 95/332 (28%)
Query: 55 EPPPPAAQPPPAPA---PAAAQGPPPEAL----------PAEPAAE----AEAEAAAAAA 97
EP PP P P P A PPP P P E A EA A
Sbjct: 169 EPGPPKPGVPQEPGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPA 228
Query: 98 EPGFDDEEAAEGGGP--------------------------------GAEEVECPLCLVR 125
D+EE A G E ECP+C
Sbjct: 229 SYQPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSV 288
Query: 126 LPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCP------ECSERLNPHDIRLLL 179
L P A L C H CR+CL+ +R + +SCP CS +L +I+ LL
Sbjct: 289 LAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLLEREIKALL 345
Query: 180 ADPPLMHKYEEFM-----------LRRYLASDPDCR-WCPAPDCGYAVIAYGCASCPKLT 227
Y+ F+ Y PDC+ WC D V + C C +
Sbjct: 346 TP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFTCPVCFHVN 398
Query: 228 CEREGCQTEFCYHCKQIWHPNQTCDMARQQ---RAQTLRVRTKHTSGLSYGQESGPDDIK 284
C CK I H C ++ RAQ + T L + G +
Sbjct: 399 ----------CLLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQG--EAM 445
Query: 285 PCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWL 316
CP+C +++ DG C+ + C VC E CW+
Sbjct: 446 RCPQCQ-IVVQKKDG-CDWIRCTVCHTEICWV 475
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 62.4 bits (150), Expect = 1e-09
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISES-RVPISCPE--CSERLNPH 173
+EC C P E + H C++CL Y + + S ++ +SC E C+
Sbjct: 513 IECRCCYGEFPFEELTQCADA-HLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTS 571
Query: 174 DIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGC 233
++ +L +++KY E +A+ P C + + + + +C C
Sbjct: 572 ELEKVLPQT-ILYKYYERKAEEEVAAAYADELVRCPSCSFPALLD--SDVKRFSCPNPHC 628
Query: 234 QTEFCYHCKQIW--HPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSA 291
+ E C C+ +W H TC+ ++ ++ RT S ++ I+ C +C
Sbjct: 629 RKETCRKCQGLWKEHNGLTCEELAEK--DDIKYRT------SIEEKMTAARIRKCHKCGT 680
Query: 292 YIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDL-----HYLSP-------SGCTFW 335
+IK CN M+C CG + C+LC I+ H SP S C+ W
Sbjct: 681 GLIKSE--GCNRMSCR-CGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRCSLW 733
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 62.4 bits (150), Expect = 1e-09
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 32/236 (13%)
Query: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISES-RVPISCPE--CSERLNPH 173
+EC C P E + H C++CL Y + + S ++ +SC E C+
Sbjct: 570 IECRCCYGEFPFEELTQCADA-HLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTS 628
Query: 174 DIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGC 233
++ +L +++KY E +A+ P C + + + + +C C
Sbjct: 629 ELEKVLPQT-ILYKYYERKAEEEVAAAYADELVRCPSCSFPALLD--SDVKRFSCPNPHC 685
Query: 234 QTEFCYHCKQIW--HPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSA 291
+ E C C+ +W H TC+ ++ ++ RT S ++ I+ C +C
Sbjct: 686 RKETCRKCQGLWKEHNGLTCEELAEK--DDIKYRT------SIEEKMTAARIRKCHKCGT 737
Query: 292 YIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDL-----HYLSP-------SGCTFW 335
+IK CN M+C CG + C+LC I+ H SP S C+ W
Sbjct: 738 GLIKSE--GCNRMSCR-CGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRCSLW 790
>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
Length = 835
Score = 57.8 bits (138), Expect = 3e-08
Identities = 43/126 (34%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 60 AAQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEV-- 117
AA P P +A G E P+A A A A+AAA+ P GGG A E+
Sbjct: 15 AASGSPGPGEGSAGG---EKRSTAPSAAASASASAAASSPA--------GGGAEALELLE 63
Query: 118 ECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISES--------RVPISCPECSER 169
C +C RL PER PRLL C H +C CL + S + CP C ++
Sbjct: 64 HCGVCRERLRPEREPRLLPCLHSACSACLGPAAPAAANSSGDGGAAGDGTVVDCPVCKQQ 123
Query: 170 LNPHDI 175
DI
Sbjct: 124 CFSKDI 129
Score = 29.6 bits (65), Expect = 8.1
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 58 PPAAQPPPAPAP---AAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGA 114
PP A P P A A+GP E P + + + ++ E + +A GGGPG
Sbjct: 565 PPTATEGPETKPVLMALAEGPGAEG----PRLASPSGSTSSGLEVVAPEGTSAPGGGPGT 620
Query: 115 EEVECPLCLVRLPP 128
+ +C V P
Sbjct: 621 LDDSATICRVCQKP 634
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 56.2 bits (134), Expect = 8e-08
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 206 CPAPDCGYAVIAYGCASCPKLTCERE---GCQTEFCYHCKQIWHPNQTCDM--ARQQRAQ 260
CP P CG ++ K+TCE GC FC CK+ +H + + A Q
Sbjct: 183 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 240
Query: 261 TLRVRTKHTSGLSY---GQESGPDDIKPCPRCSAYIIKMNDGSCNHMTC--AVCGCEFCW 315
RV + + +E+ KPCPRC + K +G C HM C C E+CW
Sbjct: 241 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWCW 298
Query: 316 LC 317
C
Sbjct: 299 NC 300
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 56.2 bits (134), Expect = 8e-08
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 206 CPAPDCGYAVIAYGCASCPKLTCERE---GCQTEFCYHCKQIWHPNQTCDM--ARQQRAQ 260
CP P CG ++ K+TCE GC FC CK+ +H + + A Q
Sbjct: 304 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 361
Query: 261 TLRVRTKHTSGLSY---GQESGPDDIKPCPRCSAYIIKMNDGSCNHMTC--AVCGCEFCW 315
RV + + +E+ KPCPRC + K +G C HM C C E+CW
Sbjct: 362 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWCW 419
Query: 316 LC 317
C
Sbjct: 420 NC 421
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 56.2 bits (134), Expect = 8e-08
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 206 CPAPDCGYAVIAYGCASCPKLTCERE---GCQTEFCYHCKQIWHPNQTCDM--ARQQRAQ 260
CP P CG ++ K+TCE GC FC CK+ +H + + A Q
Sbjct: 332 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQ 389
Query: 261 TLRVRTKHTSGLSY---GQESGPDDIKPCPRCSAYIIKMNDGSCNHMTC--AVCGCEFCW 315
RV + + +E+ KPCPRC + K +G C HM C C E+CW
Sbjct: 390 AYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWCW 447
Query: 316 LC 317
C
Sbjct: 448 NC 449
>gi|22749145 ring finger protein 217 [Homo sapiens]
Length = 275
Score = 55.1 bits (131), Expect = 2e-07
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 152 LEISESRVPISCP--ECSERLNPHDIRLLLADPPLMHKYEEFM-LRRYLASDPDCRWCPA 208
+++ +V I CP EC E L + L + KY+ F+ L R +S C C
Sbjct: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSI-KYKYFLELGRIDSSTKPCPQCKH 59
Query: 209 ----PDCGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRV 264
G+ S K+ C CQ +C+ C WH C ++ + ++
Sbjct: 60 FTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPWHEGVNC----KEYKKGDKL 113
Query: 265 RTKHTSGLSYGQESGPDDIKPCPRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDL 324
S + +GQ + + CP+C +I + C+HMTC+ C FC+ C + L
Sbjct: 114 LRHWASEIEHGQRNA----QKCPKCKIHIQRTE--GCDHMTCSQCNTNFCYRCGERYRQL 167
Query: 325 HY-------LSPSGCTF 334
+ LS GC +
Sbjct: 168 RFFGDHTSNLSIFGCKY 184
>gi|209977046 fibrous sheath CABYR binding protein [Homo sapiens]
Length = 825
Score = 50.4 bits (119), Expect = 4e-06
Identities = 41/102 (40%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 33 LTLHSVFSASARGRRARAKPQ-AEPPPPAAQPPPA-PAPAAAQGPPPEALPAEPAAEAEA 90
+ L + ASA A +P AE P QPPPA APA Q PP E PAE A
Sbjct: 593 IQLLAATEASAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAE-VQPPPA 651
Query: 91 EAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCLVRLPPERAP 132
E A A +P +E AE P AE E P + LP E P
Sbjct: 652 EEAPAEVQPPPAEEAPAEVQPPPAE--EAPAEVQSLPAEETP 691
Score = 40.8 bits (94), Expect = 0.004
Identities = 32/73 (43%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
Query: 48 ARAKPQAEPPPPAA------QPPPA-PAPAAAQGPPPEALPAE----PAAEAEAEAAAAA 96
A P PPPA QPPPA APA Q PP E PAE PA E E AA
Sbjct: 639 AEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQPPPAEEAPAEVQSLPAEETPIEETLAA 698
Query: 97 A-EPGFDDEEAAE 108
P DD A E
Sbjct: 699 VHSPPADDVPAEE 711
Score = 31.2 bits (69), Expect = 2.8
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 60 AAQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEE 116
A + P AP Q P P+ AE A+ AE + AA P DE AE P +EE
Sbjct: 445 AMETPAEEAPTEFQSPLPKETTAEEAS-AEIQLLAATEPPA--DETPAEARSPLSEE 498
Score = 29.6 bits (65), Expect = 8.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 60 AAQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAE 108
A +PP PA A+ P E AE EA AE + AE +E +AE
Sbjct: 479 ATEPPADETPAEARSPLSEETSAE---EAHAEVQSPLAEETTAEEASAE 524
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 50.1 bits (118), Expect = 6e-06
Identities = 52/185 (28%), Positives = 69/185 (37%), Gaps = 27/185 (14%)
Query: 2 GSEKDSESPRSTSLHAAAPDPK---CRSGG----RRRRLTLHSVFSASARGRRARAKPQA 54
GSE S+SP S S+ A DP C + R T+H + ++R +P A
Sbjct: 662 GSE-GSQSPGS-SVDDAEDDPSRTLCEACNIRFSRHETYTVHKRYYCASRHDPPPRRPAA 719
Query: 55 EPPPPAAQPPPAPAPA---------------AAQGPPPEALPAEPAAEAEAEAAAAAAEP 99
P PP PPAP+PA AA PPP PA E+ + + + P
Sbjct: 720 PPGPPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPGSGSGSGP 779
Query: 100 GFDDEEAAEGGGPGAEEVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRV 159
G A GP A+ R P AP + C C + LE +
Sbjct: 780 GL---APARSPGPAADGPIDLSKKPRRPLPGAPAPALADYHECTACRVSFHSLEAYLAHK 836
Query: 160 PISCP 164
SCP
Sbjct: 837 KYSCP 841
Score = 36.2 bits (82), Expect = 0.086
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 43 ARGRRARAKPQAEPPPPAAQPPPAPAPAAAQGPPPEALPA 82
+RG R P+ + PPP P PA AP A PPP A P+
Sbjct: 914 SRGPRDGLGPEPQEPPPGPPPSPAAAPEAV--PPPPAPPS 951
Score = 34.3 bits (77), Expect = 0.33
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 53 QAEPPPPAAQPPPAPAPAAAQGPP-----PEALPAEPAAEAEAEAAAAAAEPGFDDEEAA 107
+A PAA+ P AP P A+ PP P+A + P A E A AA P E+ A
Sbjct: 604 RAPEDAPAARRPKAP-PGPARAPPGQPAEPDAPRSSPGPGAREEGAGGAATP----EDGA 658
Query: 108 EGGGPGAEEVECP 120
GG G+E + P
Sbjct: 659 --GGRGSEGSQSP 669
Score = 32.0 bits (71), Expect = 1.6
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 23/98 (23%)
Query: 50 AKPQAEPPPPAAQ-PPPAPAPAAAQGP---------------PPEALPAEPAAEAEAEAA 93
A P E PA + P PAPAPAA+ P PP P PAA EA
Sbjct: 886 AGPGVEARTPADRGPSPAPAPAASPQPGSRGPRDGLGPEPQEPPPGPPPSPAAAPEA-VP 944
Query: 94 AAAAEPGFDDE------EAAEGGGPGAEEVECPLCLVR 125
A P + D+ + P C LC ++
Sbjct: 945 PPPAPPSYSDKGVQTPSKGTPAPLPNGNHRYCRLCNIK 982
>gi|239751227 PREDICTED: hypothetical protein XP_002347761 [Homo
sapiens]
Length = 282
Score = 49.3 bits (116), Expect = 1e-05
Identities = 48/188 (25%), Positives = 68/188 (36%), Gaps = 41/188 (21%)
Query: 56 PPPPAAQPPPAPAPAAAQGPPPEALPAEPAAEAE-AEAAAAAAEPGFDDEEAAEGGGPGA 114
P P A PPAP + P P++ A P E + + E D ++AE G P
Sbjct: 11 PLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAG 70
Query: 115 E--EVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNP 172
E EV C CL +A +SC C+ +Y C E L P
Sbjct: 71 EGKEVLCDFCLDDTRRVKAV-------KSCLTCMVNY----------------CEEHLQP 107
Query: 173 HDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREG 232
H + + L L D + R+CPA ++ ++ C CP C +
Sbjct: 108 HQVNIKLQSHLLTEP----------VKDHNWRYCPA---HHSPLSAFC--CPDQQCICQD 152
Query: 233 CQTEFCYH 240
C E H
Sbjct: 153 CCQEHSGH 160
>gi|48255913 tripartite motif-containing 16 [Homo sapiens]
Length = 564
Score = 49.3 bits (116), Expect = 1e-05
Identities = 48/188 (25%), Positives = 68/188 (36%), Gaps = 41/188 (21%)
Query: 56 PPPPAAQPPPAPAPAAAQGPPPEALPAEPAAEAE-AEAAAAAAEPGFDDEEAAEGGGPGA 114
P P A PPAP + P P++ A P E + + E D ++AE G P
Sbjct: 11 PLPRATAQPPAPLSPDSGSPSPDSGSASPVEEEDVGSSEKLGRETEEQDSDSAEQGDPAG 70
Query: 115 E--EVECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNP 172
E EV C CL +A +SC C+ +Y C E L P
Sbjct: 71 EGKEVLCDFCLDDTRRVKAV-------KSCLTCMVNY----------------CEEHLQP 107
Query: 173 HDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREG 232
H + + L L D + R+CPA ++ ++ C CP C +
Sbjct: 108 HQVNIKLQSHLLTEP----------VKDHNWRYCPA---HHSPLSAFC--CPDQQCICQD 152
Query: 233 CQTEFCYH 240
C E H
Sbjct: 153 CCQEHSGH 160
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 47.4 bits (111), Expect = 4e-05
Identities = 37/103 (35%), Positives = 44/103 (42%), Gaps = 17/103 (16%)
Query: 44 RGRRARAKPQAEPPPPAAQPPPAPAPAAAQGPPPEALPAEPAAEAEAE----AAAAAAEP 99
RG RA + PA PPAP P + P P A EPAA A AAA+A
Sbjct: 2 RGLRASGASPSPRSSPARSHPPAPLPFPERLPRPAA--KEPAARTPARQVFPAAASAGRE 59
Query: 100 GFDDEEAAEGGGPG---AEEVECPLCLVRLPPERAPRLLSCPH 139
G + A G PG + E+ PP RAPR + PH
Sbjct: 60 GSAAPDGARGSTPGLAASRELS--------PPPRAPRTVPAPH 94
Score = 30.0 bits (66), Expect = 6.2
Identities = 33/119 (27%), Positives = 40/119 (33%), Gaps = 24/119 (20%)
Query: 18 AAPDPKCRSGGRRRRLTLHSVFSASAR-GRRARAKP--------------QAEPPPPAAQ 62
AA +P R+ R+ VF A+A GR A P + PPP A +
Sbjct: 36 AAKEPAARTPARQ-------VFPAAASAGREGSAAPDGARGSTPGLAASRELSPPPRAPR 88
Query: 63 PPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPL 121
PAP P + P A P EPG E A P CPL
Sbjct: 89 TVPAPHPRLSPARRPGAEPENKFVALRGSHKTRNREPGMLRE--AFKSAPPTGSGYCPL 145
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,788,348
Number of Sequences: 37866
Number of extensions: 1590170
Number of successful extensions: 37886
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 1158
Number of HSP's that attempted gapping in prelim test: 18010
Number of HSP's gapped (non-prelim): 13081
length of query: 587
length of database: 18,247,518
effective HSP length: 108
effective length of query: 479
effective length of database: 14,157,990
effective search space: 6781677210
effective search space used: 6781677210
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.