SMG5 10150

Name: SMG5	Sequence: fasta or formatted (1016aa)		NCBI GI: 187960090
Description: SMG5 homolog nonsense mediated mRNA decay factor		Referenced in: RNases and RNA Stability
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 71 3 C cysteine 2.8 28 2 D aspartate 4.8 49 2 E glutamate 8.7 88 4 F phenylalanine 3.1 32 1 G glycine 5.5 56 3 H histidine 2.5 25 2 I isoleucine 3.8 39 2 K lysine 5.0 51 2 L leucine 12.6 128 3 M methionine 2.2 22 1 N asparagine 3.1 31 1 P proline 5.8 59 3 Q glutamine 5.6 57 2 R arginine 6.1 62 4 S serine 9.4 95 3 T threonine 3.4 35 2 V valine 5.0 51 2 W tryptophan 0.7 7 1 Y tyrosine 3.0 30 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SMG5 homolog nonsense mediated mRNA decay factor [H... SMG7 0.027 SMG-7 homolog isoform 1 SMG7 0.027 SMG-7 homolog isoform 2 SMG7 0.026 SMG-7 homolog isoform 4 SMG6 0.025 Smg-6 homolog, nonsense mediated mRNA decay factor ... DSPP 0.009 dentin sialophosphoprotein preproprotein GTF2F1 0.009 general transcription factor IIF, polypeptide 1, 74... IWS1 0.009 IWS1 homolog TTBK1 0.009 tau tubulin kinase 1 AFF4 0.009 ALL1 fused gene from 5q31 RP1L1 0.009 retinitis pigmentosa 1-like 1 MACROD2 0.008 MACRO domain containing 2 isoform 1 MACROD2 0.008 MACRO domain containing 2 isoform 2 MYST3 0.008 MYST histone acetyltransferase (monocytic leukemia)... MYST3 0.008 MYST histone acetyltransferase (monocytic leukemia)... MYST3 0.008 MYST histone acetyltransferase (monocytic leukemia)... NKAP 0.008 NFKB activating protein SETD1A 0.007 SET domain containing 1A CYLC1 0.007 cylicin, basic protein of sperm head cytoskeleton 1... SLC24A1 0.007 solute carrier family 24 (sodium/potassium/calcium ex... AP3B2 0.007 adaptor-related protein complex 3, beta 2 subunit [H... RPGR 0.007 retinitis pigmentosa GTPase regulator isoform C [Hom... ZC3H4 0.007 zinc finger CCCH-type containing 4 CDC2L2 0.007 cell division cycle 2-like 2 isoform 4 CDC2L2 0.007 cell division cycle 2-like 2 isoform 1 CDC2L1 0.007 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.007 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.007 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.007 cell division cycle 2-like 1 (PITSLRE proteins) isof... CDC2L1 0.007 cell division cycle 2-like 1 (PITSLRE proteins) isof... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.