Guide to the Human Genome
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Name: MACROD2 Sequence: fasta or formatted (213aa) NCBI GI: 74325776
Description:

MACRO domain containing 2 isoform 2

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Additional Genes in Development

Other entries for this name:
alt prot [425aa] MACRO domain containing 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          9           1
 C cysteine            0.5          1           1
 D aspartate          11.7         25           2
 E glutamate          20.2         43           4
 F phenylalanine       1.4          3           2
 G glycine             6.1         13           2
 H histidine           0.9          2           1
 I isoleucine          2.8          6           1
 K lysine              6.1         13           1
 L leucine             1.9          4           1
 M methionine          2.8          6           1
 N asparagine          6.1         13           2
 P proline             5.6         12           1
 Q glutamine           7.0         15           2
 R arginine            1.4          3           1
 S serine              8.0         17           2
 T threonine           5.6         12           1
 V valine              7.0         15           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MACRO domain containing 2 isoform 2 
MACROD2               0.859   MACRO domain containing 2 isoform 1 
MDN1                  0.092   MDN1, midasin homolog 
NSBP1                 0.074   nucleosomal binding protein 1 
SETD1B                0.067   SET domain containing 1B 
PELP1                 0.064   proline, glutamic acid and leucine rich protein 1 [...
RP1L1                 0.064   retinitis pigmentosa 1-like 1 
HTATSF1               0.059   HIV-1 Tat specific factor 1 
HTATSF1               0.059   HIV-1 Tat specific factor 1 
ERICH1                0.059   glutamate-rich 1 
GTF2F1                0.059   general transcription factor IIF, polypeptide 1, 74...
NCL                   0.057   nucleolin 
NEFM                  0.057   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.057   neurofilament, medium polypeptide 150kDa isoform 2 ...
ACRC                  0.054   ACRC protein 
MYST4                 0.054   MYST histone acetyltransferase (monocytic leukemia)...
RPGR                  0.054   retinitis pigmentosa GTPase regulator isoform C [Hom...
DMP1                  0.054   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.054   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
CDC2L2                0.054   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.054   cell division cycle 2-like 2 isoform 1 
PCDH15                0.054   protocadherin 15 isoform CD2-1 precursor 
CLSPN                 0.052   claspin 
DSPP                  0.052   dentin sialophosphoprotein preproprotein 
ANP32E                0.052   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.052   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.052   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
PCLO                  0.052   piccolo isoform 2 
PCLO                  0.052   piccolo isoform 1 
MPHOSPH10             0.050   M-phase phosphoprotein 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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