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Search of human proteins with 187829745
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187829745 BCL2 binding component 3 isoform 3 [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187829745 BCL2 binding component 3 isoform 3 [Homo sapiens] 218 8e-58
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 154 2e-38
gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens] 78 1e-15
gi|7706469 Kruppel-like factor [Homo sapiens] 33 0.063
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 32 0.14
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 32 0.14
gi|33438586 zinc finger protein 77 [Homo sapiens] 31 0.18
gi|151301137 AT-hook transcription factor [Homo sapiens] 31 0.18
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 31 0.24
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 30 0.31
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 30 0.31
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|50428935 BPY2 interacting protein 1 [Homo sapiens] 30 0.41
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|92859670 solute carrier family 6 (neurotransmitter transporte... 30 0.54
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 29 0.70
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 29 0.70
gi|239746361 PREDICTED: hypothetical protein XP_002343736 [Homo ... 29 0.91
gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens] 29 0.91
gi|11386197 forkhead box E3 [Homo sapiens] 29 0.91
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 28 1.2
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 28 1.2
gi|7706589 GNAS complex locus NESP55 [Homo sapiens] 28 1.2
gi|169214926 PREDICTED: similar to IQ motif and SEC7 domain-cont... 28 1.2
gi|113428915 PREDICTED: similar to IQ motif and SEC7 domain-cont... 28 1.2
gi|28269687 zygote arrest 1 [Homo sapiens] 28 1.2
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 28 1.2
gi|169217823 PREDICTED: similar to IQ motif and SEC7 domain-cont... 28 1.6
gi|239755398 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239753710 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
>gi|187829745 BCL2 binding component 3 isoform 3 [Homo sapiens]
Length = 101
Score = 218 bits (555), Expect = 8e-58
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 60
MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 60
Query: 61 SPRDGAQLGACTRPVDVRDSGGRPLPPPDTLASAGDFLCTM 101
SPRDGAQLGACTRPVDVRDSGGRPLPPPDTLASAGDFLCTM
Sbjct: 61 SPRDGAQLGACTRPVDVRDSGGRPLPPPDTLASAGDFLCTM 101
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 154 bits (388), Expect = 2e-38
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 30 ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPD 89
ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPD
Sbjct: 190 ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPD 249
Query: 90 TLASAGDFLCTM 101
TLASAGDFLCTM
Sbjct: 250 TLASAGDFLCTM 261
Score = 75.5 bits (184), Expect = 9e-15
Identities = 45/93 (48%), Positives = 48/93 (51%), Gaps = 24/93 (25%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 60
MKFGMGSAQACPCQVPRAASTTWVPCQIC GP + H GP+
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQIC--------------GPRERH--------GPR 38
Query: 61 SPRDGAQLGACTRPVDVRDSGGRPLPPPDTLAS 93
+P G QL R R P PP L S
Sbjct: 39 TP--GGQLPGARRGPGPRRPAPLPARPPGALGS 69
>gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens]
Length = 131
Score = 78.2 bits (191), Expect = 1e-15
Identities = 40/67 (59%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 60
MKFGMGSAQACPCQVPRAASTTWVPCQIC + + + LE PV S G AL GP
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPG--ALAGGPT 58
Query: 61 SPRDGAQ 67
G +
Sbjct: 59 QAAPGVR 65
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 32.7 bits (73), Expect = 0.063
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 53 PALTQGPQS-PRDGAQLGACTRPVDVRDSGGRPLPPPDT 90
P LT+GP+ R+GA A + +R GGRP PPPDT
Sbjct: 138 PGLTRGPRGLKREGAPGPAASC---MRGPGGRPPPPPDT 173
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 7 SAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGA 66
+++ CP P P T G+ + +EGPVQ + + Q+P GA
Sbjct: 579 ASRPCPAAQPPTKFIKIAPAIQLRT-GSTGLKAINVEGPVQGAQALGSSFKPVQAPGSGA 637
Query: 67 QLGACTRPVDVRDSGGRPLP 86
A D++ SGG PLP
Sbjct: 638 PAPAGISGSDLQSSGG-PLP 656
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 34 AAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 88
AA P + + + T L PQSPR GA LGA + VD +S G PP
Sbjct: 63 AATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAAS-TVDPSESTGSSTAPP 116
>gi|33438586 zinc finger protein 77 [Homo sapiens]
Length = 545
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 11 CPCQVPRAASTTWVP---------CQICETRGAAAAPPLTLEGPVQSHHG 51
C CQ R AS T+V CQ C G A P + G V SHHG
Sbjct: 190 CNCQDSRTASVTYVKSLSSKKSYECQKC---GKAFICPSSFRGHVNSHHG 236
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 31.2 bits (69), Expect = 0.18
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 18/95 (18%)
Query: 12 PCQVPRAASTTWVP-CQICETRGAAAA---------PPLTLEGPVQSHHGTPALTQGPQS 61
P VP+ T P C+ T+ A A P TL+ P+ G+P GP S
Sbjct: 1229 PKAVPKGNGTVSCPHCRPIRTQDAGGAVTGDPLGPPPADTLQCPLCGQVGSPPEADGPGS 1288
Query: 62 PRDGAQLGACTRPVD--------VRDSGGRPLPPP 88
GA+ R + +G P PPP
Sbjct: 1289 ATSGAEKATTRRKASSTPSPKQRSKQAGSSPRPPP 1323
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 22 TWVP-CQICETR--GAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVR 78
TW P C ++R +AA P + + H T A T P+ PR G RP
Sbjct: 71 TWPPLCCYPQSRPTASAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALRPTPRP 130
Query: 79 DSGGRPLPPP 88
+G P PPP
Sbjct: 131 CAG--PAPPP 138
>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
sapiens]
Length = 528
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 32 RGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPDTL 91
R + A PP P +S TP+ T GP+SP G P R G P T+
Sbjct: 255 RSSRAPPPARRPLPCESLR-TPSGTAGPRSPASGPDARGAPTPGRARGGGASWSATPTTI 313
Query: 92 ASAG 95
G
Sbjct: 314 PGPG 317
>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
sapiens]
Length = 528
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 32 RGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPDTL 91
R + A PP P +S TP+ T GP+SP G P R G P T+
Sbjct: 255 RSSRAPPPARRPLPCESLR-TPSGTAGPRSPASGPDARGAPTPGRARGGGASWSATPTTI 313
Query: 92 ASAG 95
G
Sbjct: 314 PGPG 317
>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 528
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 32 RGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPDTL 91
R + A PP P +S TP+ T GP+SP G P R G P T+
Sbjct: 255 RSSRAPPPARRPLPCESLR-TPSGTAGPRSPASGPDARGAPTPGRARGGGASWSATPTTI 313
Query: 92 ASAG 95
G
Sbjct: 314 PGPG 317
>gi|50428935 BPY2 interacting protein 1 [Homo sapiens]
Length = 1059
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 12 PCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSP 62
P +V RAAS+ VP + +T AA P + P SH G P + GP+SP
Sbjct: 538 PREVRRAASS--VP-NLKKTNAQAAPKPR--KAPSTSHSGFPPVANGPRSP 583
>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 33 GAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP--DT 90
G + P L P + G +G P Q G RP + +SG PLP P T
Sbjct: 81 GGSWPQPCRLRSPA-ARRGEICAPRGGSPPLPEGQAGTGQRPQGLAESGEEPLPRPCQGT 139
Query: 91 LASA-GDFLC 99
L S G + C
Sbjct: 140 LVSGPGPYFC 149
>gi|92859670 solute carrier family 6 (neurotransmitter transporter,
glycine), member 5 [Homo sapiens]
Length = 797
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 4 GMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 60
G+GS C PRA + + + E +GA A+PP GP + H +GP+
Sbjct: 76 GVGS---CKLSSPRAQAASAALRDLREAQGAQASPPPGSSGPGNALHCKIPFLRGPE 129
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 24 VPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGA 70
+PC +C GA + PL V G PAL P P D + L A
Sbjct: 696 LPCPLCSREGACSCLPLERGDAVAGWGGHPAL-GCPHPPEDDSSLRA 741
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 38 PPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPP 87
PP L+G V GTP+ +GP+SPR A C + +S R P
Sbjct: 356 PPSLLQGEVM---GTPSSPRGPESPRLAAGPSPCWHLGAMHESRSRWTEP 402
>gi|239746361 PREDICTED: hypothetical protein XP_002343736 [Homo
sapiens]
Length = 508
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 2/90 (2%)
Query: 14 QVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGAC-- 71
QV +A S + + + G A + + SH GTP+ ++ P + G C
Sbjct: 170 QVAQAESQVLLVGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQPAGPTGTCSG 229
Query: 72 TRPVDVRDSGGRPLPPPDTLASAGDFLCTM 101
T +R G P +L A C++
Sbjct: 230 THSARLRPGGPHTRGMPGSLRGARSQHCSL 259
>gi|21361831 partitioning-defective protein 3 homolog [Homo sapiens]
Length = 1356
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 44 GPVQSHHGTPALTQGPQSPRDGAQLGA 70
G V S+ G+ AL PQSPR+G + A
Sbjct: 1099 GGVSSYEGSMALNARPQSPREGHMMDA 1125
>gi|11386197 forkhead box E3 [Homo sapiens]
Length = 319
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 4 GMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGP 59
G+G+ + C P AA+ + PC AAA+PPL + P PA GP
Sbjct: 231 GLGAPEPPCCAAPDAAAAAFPPC------AAAASPPLYSQVP--DRLVLPATRPGP 278
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 17/64 (26%)
Query: 30 ETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPPD 89
+T + PPL+L G + G P LT GPQ R+ G RP P
Sbjct: 1155 KTSSGSLPPPLSLFGARATSSGGPPLTAGPQ-----------------REPGARPEPVRS 1197
Query: 90 TLAS 93
L S
Sbjct: 1198 KLPS 1201
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 36 AAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 88
A PP T GP G P P + R G P +GG P+PPP
Sbjct: 350 APPPPTPRGPPPPGRGGPPPPPPPATGRSGPL------PPPPPGAGGPPMPPP 396
>gi|7706589 GNAS complex locus NESP55 [Homo sapiens]
Length = 245
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 40 LTLEGPVQSHHGTPALTQGPQSPRDGAQL 68
L L P S P TQ PQSPR+G +L
Sbjct: 166 LKLRSPDASPSRAPPSTQEPQSPREGEEL 194
>gi|169214926 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 1.2
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 19/99 (19%)
Query: 10 ACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSH--------HGTPALTQGPQS 61
A P P AA+ P Q R AAA P P Q H G + PQS
Sbjct: 78 AAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSRAHTPQS 137
Query: 62 PRD--GAQLGACTRPVDVRDSGGRPLPPPDTLASAGDFL 98
P+ G Q GA T R PP A+AG L
Sbjct: 138 PQKHLGTQ-GAVTDKEKER--------PPSCCAAAGALL 167
>gi|113428915 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 28.5 bits (62), Expect = 1.2
Identities = 32/99 (32%), Positives = 36/99 (36%), Gaps = 19/99 (19%)
Query: 10 ACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSH--------HGTPALTQGPQS 61
A P P AA+ P Q R AAA P P Q H G + PQS
Sbjct: 78 AAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSRAHTPQS 137
Query: 62 PRD--GAQLGACTRPVDVRDSGGRPLPPPDTLASAGDFL 98
P+ G Q GA T R PP A+AG L
Sbjct: 138 PQKHLGTQ-GAVTDKEKER--------PPSCCAAAGALL 167
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 33 GAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPP 87
G PP L+GP + T + PQS DG + A R + + G LPP
Sbjct: 211 GERGPPPARLQGPEEGEVWTKKAPRRPQSDDDG-EAQAAVRASWEQPADGPELPP 264
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 45 PVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVRDSGGRPLPPP 88
P Q TP P P G+QL + + GRPLPPP
Sbjct: 501 PEQEEASTP---MDPSRPLPGSQLSLSSPGSTEDEDTGRPLPPP 541
>gi|169217823 PREDICTED: similar to IQ motif and SEC7
domain-containing protein 3 [Homo sapiens]
Length = 185
Score = 28.1 bits (61), Expect = 1.6
Identities = 32/99 (32%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 10 ACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSH--------HGTPALTQGPQS 61
A P P AA+ P Q R AAA P P Q H G + PQS
Sbjct: 78 AAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSRAHTPQS 137
Query: 62 PRD--GAQLGACTRPVDVRDSGGRPLPPPDTLASAGDFL 98
P G Q GA T R PP A+AG L
Sbjct: 138 PHKHLGTQ-GAVTDKEKER--------PPSCCAAAGALL 167
>gi|239755398 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 17 RAASTTWVPCQICETRGAAAAPPLTLEGPVQSHH-GTPAL--TQGPQSPRDGAQLGACTR 73
+ ++ W PC + P T S G P L P S R+ ++L +
Sbjct: 201 QGSTWVWPPCLFLLVEPVSHGGPTTCSSWWNSSTTGGPHLFLLVEPVSHREASRLFLLVQ 260
Query: 74 PVDVRDSGGRPLPP 87
PV R GG P+PP
Sbjct: 261 PVSHRAGGGPPVPP 274
>gi|239753710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGP 45
G+ + C A TTW + R AAA PP GP
Sbjct: 211 GALEWCRMSARAPAGTTWAGSEAEPERAAAAVPPELAVGP 250
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,391,601
Number of Sequences: 37866
Number of extensions: 286446
Number of successful extensions: 1155
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 129
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.