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Search of human proteins with 187829742
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens] 278 1e-75
gi|15193488 BCL2 binding component 3 isoform 4 [Homo sapiens] 213 3e-56
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 80 5e-16
gi|187829745 BCL2 binding component 3 isoform 3 [Homo sapiens] 78 2e-15
gi|33286444 mastermind-like 2 [Homo sapiens] 38 0.003
gi|110431370 espin [Homo sapiens] 36 0.010
gi|4502425 bone morphogenetic protein 6 preproprotein [Homo sapi... 32 0.11
gi|148746195 trichohyalin [Homo sapiens] 32 0.11
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.14
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 32 0.14
gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens] 32 0.14
gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens] 32 0.14
gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens] 32 0.14
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.19
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 32 0.19
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 32 0.19
gi|18129630 chromosome 20 open reading frame 165 [Homo sapiens] 30 0.54
gi|154146199 sal-like 3 [Homo sapiens] 30 0.54
gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens] 30 0.54
gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 30 0.54
gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens] 30 0.54
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 30 0.54
gi|11386197 forkhead box E3 [Homo sapiens] 30 0.54
gi|149274614 melanoma antigen family D, 4 [Homo sapiens] 30 0.54
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 30 0.70
gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens] 30 0.70
gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens] 30 0.70
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 30 0.70
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 29 0.92
gi|226495417 coiled-coil domain containing 102A [Homo sapiens] 29 0.92
>gi|187829742 BCL2 binding component 3 isoform 2 [Homo sapiens]
Length = 131
Score = 278 bits (710), Expect = 1e-75
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQA 60
MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQA
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQA 60
Query: 61 APGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPLP 120
APGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPLP
Sbjct: 61 APGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPLP 120
Query: 121 RGHRAPEMEPN 131
RGHRAPEMEPN
Sbjct: 121 RGHRAPEMEPN 131
>gi|15193488 BCL2 binding component 3 isoform 4 [Homo sapiens]
Length = 193
Score = 213 bits (543), Expect = 3e-56
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 30 GPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQ 89
GPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQ
Sbjct: 92 GPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQ 151
Query: 90 YERRRQEEQQRHRPSPWRVLYNLIMGLLPLPRGHRAPEMEPN 131
YERRRQEEQQRHRPSPWRVLYNLIMGLLPLPRGHRAPEMEPN
Sbjct: 152 YERRRQEEQQRHRPSPWRVLYNLIMGLLPLPRGHRAPEMEPN 193
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 80.1 bits (196), Expect = 5e-16
Identities = 42/64 (65%), Positives = 46/64 (71%), Gaps = 8/64 (12%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQH-LESPVPSAPGALAG-GPT 58
MKFGMGSAQACPCQVPRAASTTWVPCQICGP+ E+H +P PGA G GP
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPR------ERHGPRTPGGQLPGARRGPGPR 54
Query: 59 QAAP 62
+ AP
Sbjct: 55 RPAP 58
>gi|187829745 BCL2 binding component 3 isoform 3 [Homo sapiens]
Length = 101
Score = 78.2 bits (191), Expect = 2e-15
Identities = 40/67 (59%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPG--ALAGGPT 58
MKFGMGSAQACPCQVPRAASTTWVPCQIC + + + LE PV S G AL GP
Sbjct: 1 MKFGMGSAQACPCQVPRAASTTWVPCQICETRGAAAAPPLTLEGPVQSHHGTPALTQGPQ 60
Query: 59 QAAPGVR 65
G +
Sbjct: 61 SPRDGAQ 67
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 37.7 bits (86), Expect = 0.003
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 30 GPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQ-LRRMADDLNA 88
GP S++ + SP+PS P + A Q G W AQ L+++A N
Sbjct: 388 GPAFSMANSALSTSSPIPSVPQSQA--QPQTGSGASRALPSWQEVSHAQQLKQIA--ANR 443
Query: 89 QYERRRQEEQQRHRPSPWRVL 109
Q R Q+ QQ+H+P+ W L
Sbjct: 444 QQHARMQQHQQQHQPTNWSAL 464
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 35.8 bits (81), Expect = 0.010
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 24/94 (25%)
Query: 31 PQPSLSLAEQHLESPVPSAPG--ALAGG------PTQAAPGVRGEEE------------- 69
P PS+S A + SP P A G L G PT APGV+ + E
Sbjct: 691 PLPSVSPALSPVRSPTPPAAGFQPLLNGSLVPVPPTTPAPGVQLDVEALIPTHDEQGRPI 750
Query: 70 -QWAREIGAQLRRMADDLNAQYERRRQEEQQRHR 102
+W R++ +R+M + + E+RR+EE++ R
Sbjct: 751 PEWKRQV--MVRKMQLKMQEEEEQRRKEEEEEAR 782
>gi|4502425 bone morphogenetic protein 6 preproprotein [Homo
sapiens]
Length = 513
Score = 32.3 bits (72), Expect = 0.11
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 26 CQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADD 85
C CGP P L P+P+A A AGG G G EQ + +
Sbjct: 19 CSCCGPPP--------LRPPLPAAAAAAAGGQLLGDGGSPGRTEQPPPSPQSSSGFLYRR 70
Query: 86 LNAQYERRRQEE-----QQRHRPSP 105
L Q +R Q+E HRP P
Sbjct: 71 LKTQEKREMQKEILSVLGLPHRPRP 95
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 32.3 bits (72), Expect = 0.11
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 67 EEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRV 108
EE+ RE QL+ D L ERRR +EQ+R + W++
Sbjct: 837 EEQLQRRERAQQLQEEEDGLQEDQERRRSQEQRRDQKWRWQL 878
Score = 30.8 bits (68), Expect = 0.32
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 65 RGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHR 102
R E+E W E + + L ++ RR+Q+E+QRHR
Sbjct: 1859 REEQELWQEEEQKRRQERERKLREEHIRRQQKEEQRHR 1896
Score = 26.9 bits (58), Expect = 4.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 65 RGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHR 102
R E+++ RE QLRR ++ Q RR QEE++R +
Sbjct: 327 RREQQEERRE--QQLRREQEERREQQLRREQEEERREQ 362
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.14
Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 7 SAQACPCQVPRA--ASTTWVPCQICGPQ--PSLSLAEQHLESPVPSAPGALAGGPTQAAP 62
S A P QVP + AS P PQ P L+ L P P AP ALA P QA P
Sbjct: 473 SLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALP 532
Score = 26.2 bits (56), Expect = 7.8
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 31 PQPSLSLAEQHLESPVPSAPGALAGGPTQAAP 62
P P LS L +P P AP ALA P QA P
Sbjct: 382 PSPPLS----PLATPPPQAPPALALPPLQAPP 409
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 32.0 bits (71), Expect = 0.14
Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 7 SAQACPCQVPRA--ASTTWVPCQICGPQ--PSLSLAEQHLESPVPSAPGALAGGPTQAAP 62
S A P QVP + AS P PQ P L+ L P P AP ALA P QA P
Sbjct: 434 SLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALP 493
Score = 26.2 bits (56), Expect = 7.8
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 31 PQPSLSLAEQHLESPVPSAPGALAGGPTQAAP 62
P P LS L +P P AP ALA P QA P
Sbjct: 343 PSPPLS----PLATPPPQAPPALALPPLQAPP 370
>gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens]
Length = 2365
Score = 32.0 bits (71), Expect = 0.14
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 39 EQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQ 98
+QHL SP+P A +AG P+Q G ++ + Q + A + + Q E
Sbjct: 135 KQHLSSPLPPAVSQVAGAPSQCQAGTPQQQVPVTPQAPCQPHQPA----PHQQSKAQAEM 190
Query: 99 QRHRPSP 105
Q P P
Sbjct: 191 QSRLPGP 197
>gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens]
Length = 2432
Score = 32.0 bits (71), Expect = 0.14
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 39 EQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQ 98
+QHL SP+P A +AG P+Q G ++ + Q + A + + Q E
Sbjct: 199 KQHLSSPLPPAVSQVAGAPSQCQAGTPQQQVPVTPQAPCQPHQPA----PHQQSKAQAEM 254
Query: 99 QRHRPSP 105
Q P P
Sbjct: 255 QSRLPGP 261
>gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens]
Length = 2429
Score = 32.0 bits (71), Expect = 0.14
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 39 EQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQ 98
+QHL SP+P A +AG P+Q G ++ + Q + A + + Q E
Sbjct: 199 KQHLSSPLPPAVSQVAGAPSQCQAGTPQQQVPVTPQAPCQPHQPA----PHQQSKAQAEM 254
Query: 99 QRHRPSP 105
Q P P
Sbjct: 255 QSRLPGP 261
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.6 bits (70), Expect = 0.19
Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 7 SAQACPCQVPRAASTTWVPCQICGP------QPSLSLAEQHLESPVPSAPGALAGGPTQA 60
S A P P A VP + P P SL L P P AP ALA P QA
Sbjct: 740 SPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQA 799
Query: 61 AP 62
P
Sbjct: 800 LP 801
Score = 28.1 bits (61), Expect = 2.1
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 11 CPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAP 62
CP Q P + TT P P + +P P AP ALA P Q P
Sbjct: 567 CPLQAPPSPLTT--------PPPE---TPSSIATPPPQAPPALASPPLQGLP 607
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 31.6 bits (70), Expect = 0.19
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 31 PQPSLSLAEQ------HLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMAD 84
P P+ SL E+ LE VP PG + + PG RG+ E+ A E R
Sbjct: 1600 PSPAPSLGERLEPRKIPLEDEVPGVPGEM-----EPEPGYRGDREKSATESTPGERGEEK 1654
Query: 85 DLNAQYERRRQE 96
L+ Q R R E
Sbjct: 1655 PLDGQEHRERPE 1666
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 31.6 bits (70), Expect = 0.19
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 31 PQPSLSLAEQ------HLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMAD 84
P P+ SL E+ LE VP PG + + PG RG+ E+ A E R
Sbjct: 1659 PSPAPSLGERLEPRKIPLEDEVPGVPGEM-----EPEPGYRGDREKSATESTPGERGEEK 1713
Query: 85 DLNAQYERRRQE 96
L+ Q R R E
Sbjct: 1714 PLDGQEHRERPE 1725
>gi|18129630 chromosome 20 open reading frame 165 [Homo sapiens]
Length = 227
Score = 30.0 bits (66), Expect = 0.54
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 24/110 (21%)
Query: 25 PCQICG------PQPSLSLAEQHLESP---VPSAPGALAGGPTQAAPGVRGEEEQWAREI 75
P +CG P PS ++ ++ P + + +AG PT PGVR E+ WA
Sbjct: 124 PLMLCGLSPRVLPVPSEAVGKEASSQPDICILTLAMMIAGIPTVPVPGVREEDLIWA--- 180
Query: 76 GAQLRRMA-DDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPLPRGHR 124
AQ MA + E R E+ H S G +PL R R
Sbjct: 181 -AQAFMMAHPEPEGAVEGARWEQAHAHTAS----------GKMPLVRSKR 219
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 30.0 bits (66), Expect = 0.54
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGV 64
G A+ P AA P PQ + S Q +P APG+L G AAPG+
Sbjct: 304 GPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGSLLG----AAPGL 358
>gi|29337296 melanoma antigen family D, 4B isoform 2 [Homo sapiens]
Length = 739
Score = 30.0 bits (66), Expect = 0.54
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 19 ASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQ 78
A T WV Q + + A+ + + +P GA A +A E WAR +G +
Sbjct: 296 AKTRWVEPQNV---VAAAAAKAKMATSIPEPEGAAAATAQHSA-------EPWAR-MGGK 344
Query: 79 LRRMADDLNAQYERRRQEEQQRHRPSPWR 107
+ + L+ +YE +E + P WR
Sbjct: 345 RTKKSKHLDDEYESSEEERETPAVPPTWR 373
>gi|29337294 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 30.0 bits (66), Expect = 0.54
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 19 ASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQ 78
A T WV Q + + A+ + + +P GA A +A E WAR +G +
Sbjct: 296 AKTRWVEPQNV---VAAAAAKAKMATSIPEPEGAAAATAQHSA-------EPWAR-MGGK 344
Query: 79 LRRMADDLNAQYERRRQEEQQRHRPSPWR 107
+ + L+ +YE +E + P WR
Sbjct: 345 RTKKSKHLDDEYESSEEERETPAVPPTWR 373
>gi|29337292 melanoma antigen family D, 4B isoform 1 [Homo sapiens]
Length = 741
Score = 30.0 bits (66), Expect = 0.54
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 19 ASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQ 78
A T WV Q + + A+ + + +P GA A +A E WAR +G +
Sbjct: 296 AKTRWVEPQNV---VAAAAAKAKMATSIPEPEGAAAATAQHSA-------EPWAR-MGGK 344
Query: 79 LRRMADDLNAQYERRRQEEQQRHRPSPWR 107
+ + L+ +YE +E + P WR
Sbjct: 345 RTKKSKHLDDEYESSEEERETPAVPPTWR 373
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 30.0 bits (66), Expect = 0.54
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 19 ASTTWVPCQICGPQPSLSLAEQHLESP-VPSAPGALAGGPTQAAPGVRGEEEQWAREIGA 77
A+ P P P+ + A + +P + SAP + + + A + A
Sbjct: 425 AAPAMAPAPASAPAPASAPAPAPVPTPAMVSAPSSTVNASASVKTSAGTTDPEEATRLLA 484
Query: 78 QLRRMADDLNAQYERRRQEEQQRHR 102
+ RR+A + + ER R+E+++ R
Sbjct: 485 EKRRLAREQREKEERERREQEELER 509
>gi|11386197 forkhead box E3 [Homo sapiens]
Length = 319
Score = 30.0 bits (66), Expect = 0.54
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 4 GMGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHL--------ESPVPSAPGALAG 55
G+G+ + C P AA+ + PC P S L P+P+ P
Sbjct: 231 GLGAPEPPCCAAPDAAAAAFPPCAAAASPPLYSQVPDRLVLPATRPGPGPLPAEPLLALA 290
Query: 56 GPTQAAPGVRGEEEQWAREIG 76
GP AA G E + R+ G
Sbjct: 291 GPA-AALGPLSPGEAYLRQPG 310
>gi|149274614 melanoma antigen family D, 4 [Homo sapiens]
Length = 739
Score = 30.0 bits (66), Expect = 0.54
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Query: 19 ASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQ 78
A T WV Q + + A+ + + +P GA A +A E WAR +G +
Sbjct: 296 AKTRWVEPQNV---VAAAAAKAKMATSIPEPEGAAAATAQHSA-------EPWAR-MGGK 344
Query: 79 LRRMADDLNAQYERRRQEEQQRHRPSPWR 107
+ + L+ +YE +E + P WR
Sbjct: 345 RTKKSKHLDDEYESSEEERETPAVPPTWR 373
>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
sapiens]
Length = 406
Score = 29.6 bits (65), Expect = 0.70
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 30 GPQPSLSLAEQHLESPV--PSAPGALAGGPTQAAPGVRG 66
GP P LS +Q PV P APG + APG RG
Sbjct: 289 GPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRG 327
>gi|7019335 hypothetical protein LOC745 isoform 1 [Homo sapiens]
Length = 1111
Score = 29.6 bits (65), Expect = 0.70
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPQP-SLSLAEQHLESPVPSAPGALAGGPTQAAPGV 64
G+ A P RA S W P P P SL L+ +++P PGA + G Q + +
Sbjct: 271 GTVTALPLHPTRAPSPPWPPQGPLSPGPGSLPLSIARVQTPPWHPPGAPSPGLLQDSDSL 330
Query: 65 RGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPL 119
G L+ Y+ + Q H+ + W LY+ LP+
Sbjct: 331 SGSY-----------------LDPNYQ---SIKWQPHQQNKWATLYDANYKELPM 365
>gi|188528652 hypothetical protein LOC745 isoform 2 [Homo sapiens]
Length = 1151
Score = 29.6 bits (65), Expect = 0.70
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 21/115 (18%)
Query: 6 GSAQACPCQVPRAASTTWVPCQICGPQP-SLSLAEQHLESPVPSAPGALAGGPTQAAPGV 64
G+ A P RA S W P P P SL L+ +++P PGA + G Q + +
Sbjct: 280 GTVTALPLHPTRAPSPPWPPQGPLSPGPGSLPLSIARVQTPPWHPPGAPSPGLLQDSDSL 339
Query: 65 RGEEEQWAREIGAQLRRMADDLNAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPL 119
G L+ Y+ + Q H+ + W LY+ LP+
Sbjct: 340 SGSY-----------------LDPNYQ---SIKWQPHQQNKWATLYDANYKELPM 374
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 29.6 bits (65), Expect = 0.70
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 18 AASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGA 77
AAS PC + S E +S +A GA P+ P R E QW E G+
Sbjct: 27 AASPAQTPCSLGASLCFSSGEESPPQSLASAAEGAATSPPSSGGP--RVVERQW--EAGS 82
Query: 78 QLRRMADDLNAQYERRRQEEQQRHRPSP 105
++L + ER EE P P
Sbjct: 83 AGAASPEELASPEERACPEEPAAPSPEP 110
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 29.3 bits (64), Expect = 0.92
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 23/104 (22%)
Query: 33 PSLSLAEQHL------ESPVPSAPGALAGGPTQAAPGVRGEEEQWAREIGAQLRRMADDL 86
P+ S+ ++HL +S +P + P Q + EE I A L +L
Sbjct: 3453 PNESIDDEHLLIQHYCQSLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNL 3512
Query: 87 NAQYERRRQEEQQRHRPSPWRVLYNLIMGLLPLPRGHRAPEMEP 130
A+Y+R +Q+ + + GL PLP PEM P
Sbjct: 3513 QAEYDRLKQQHEHK--------------GLSPLP---SPPEMMP 3539
>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
Length = 550
Score = 29.3 bits (64), Expect = 0.92
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 30/109 (27%)
Query: 5 MGSAQACPCQVPRAASTTWVPCQICGPQPSLSLAEQHLESPVPSAPGALAGGPTQAAPGV 64
MG A + P P S T P GP P+L P+P AP LA G ++ +
Sbjct: 32 MGPADSLP---PTPPSGTPSP----GPPPAL---------PLPPAPALLADGDWESREEL 75
Query: 65 RGEEEQWAREIGAQ----LRRMAD----------DLNAQYERRRQEEQQ 99
R E + AR AQ +RR +D + A+ R R+E +Q
Sbjct: 76 RLRELEEARARAAQMEKTMRRWSDCTANWREKWSKVRAERNRAREEVRQ 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,834,337
Number of Sequences: 37866
Number of extensions: 373502
Number of successful extensions: 2409
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 2246
Number of HSP's gapped (non-prelim): 294
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.