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Search of human proteins with 187829640
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187829640 GC-rich promoter binding protein 1 isoform 3 [Homo
sapiens]
(480 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187829640 GC-rich promoter binding protein 1 isoform 3 [Homo ... 993 0.0
gi|28875782 GC-rich promoter binding protein 1 isoform 1 [Homo s... 974 0.0
gi|187829623 GC-rich promoter binding protein 1 isoform 2 [Homo ... 962 0.0
gi|11056016 GC-rich promoter binding protein 1-like 1 [Homo sapi... 289 4e-78
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 46 9e-05
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.040
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.040
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 37 0.040
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 37 0.040
gi|210032580 SET domain containing 1B [Homo sapiens] 37 0.040
gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens] 37 0.040
gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens] 37 0.040
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 37 0.052
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 37 0.052
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 36 0.068
gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo ... 36 0.088
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 36 0.088
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 36 0.088
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 36 0.088
gi|4504487 histidine rich calcium binding protein precursor [Hom... 36 0.088
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.12
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.12
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 35 0.12
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 35 0.12
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora... 35 0.15
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 35 0.15
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ... 35 0.20
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 35 0.20
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 35 0.20
gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens] 35 0.20
>gi|187829640 GC-rich promoter binding protein 1 isoform 3 [Homo
sapiens]
Length = 480
Score = 993 bits (2566), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 60
MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 60
Query: 61 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 120
DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN
Sbjct: 61 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 120
Query: 121 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML 180
NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML
Sbjct: 121 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML 180
Query: 181 VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK 240
VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK
Sbjct: 181 VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK 240
Query: 241 VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM 300
VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM
Sbjct: 241 VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM 300
Query: 301 RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP 360
RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP
Sbjct: 301 RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP 360
Query: 361 QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR 420
QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR
Sbjct: 361 QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR 420
Query: 421 EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 480
EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV
Sbjct: 421 EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 480
>gi|28875782 GC-rich promoter binding protein 1 isoform 1 [Homo
sapiens]
Length = 473
Score = 974 bits (2518), Expect = 0.0
Identities = 473/480 (98%), Positives = 473/480 (98%), Gaps = 7/480 (1%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 60
MAQHDFAPAWLNFPTPPSSTK SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTK-------SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 53
Query: 61 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 120
DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN
Sbjct: 54 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 113
Query: 121 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML 180
NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML
Sbjct: 114 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRML 173
Query: 181 VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK 240
VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK
Sbjct: 174 VIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENK 233
Query: 241 VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM 300
VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM
Sbjct: 234 VGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRM 293
Query: 301 RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP 360
RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP
Sbjct: 294 RTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIP 353
Query: 361 QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR 420
QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR
Sbjct: 354 QENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMR 413
Query: 421 EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 480
EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV
Sbjct: 414 EFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 473
>gi|187829623 GC-rich promoter binding protein 1 isoform 2 [Homo
sapiens]
Length = 493
Score = 962 bits (2487), Expect = 0.0
Identities = 473/500 (94%), Positives = 473/500 (94%), Gaps = 27/500 (5%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 60
MAQHDFAPAWLNFPTPPSSTK SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF
Sbjct: 1 MAQHDFAPAWLNFPTPPSSTK-------SSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 53
Query: 61 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 120
DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN
Sbjct: 54 DSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHEN 113
Query: 121 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW-------------- 166
NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVW
Sbjct: 114 NIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWGLHAQTHTYPTKKI 173
Query: 167 ------EYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVP 220
EYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVP
Sbjct: 174 SQAPLLEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVP 233
Query: 221 KPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN 280
KPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN
Sbjct: 234 KPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN 293
Query: 281 SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN 340
SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN
Sbjct: 294 SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN 353
Query: 341 SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMG 400
SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMG
Sbjct: 354 SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMG 413
Query: 401 WQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKP 460
WQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKP
Sbjct: 414 WQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFKP 473
Query: 461 TTENDDTETSSSDTSDDDDV 480
TTENDDTETSSSDTSDDDDV
Sbjct: 474 TTENDDTETSSSDTSDDDDV 493
>gi|11056016 GC-rich promoter binding protein 1-like 1 [Homo
sapiens]
Length = 474
Score = 289 bits (739), Expect = 4e-78
Identities = 203/509 (39%), Positives = 263/509 (51%), Gaps = 69/509 (13%)
Query: 1 MAQHDFAPAWLNFPTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGF 60
MAQHDF PAWLNF TP S+ + FEKH E+ E R+ V+RRRHNSSDGF
Sbjct: 1 MAQHDFVPAWLNFSTPQSAKS-------PTATFEKHGEHLPRGEGRFGVSRRRHNSSDGF 53
Query: 61 ---------------------DSAIGRPNGGNFGRKEKN--GWRTHGRNGTENINHRGGY 97
DS + G + N GW + R G + ++ R G
Sbjct: 54 FNNGPLRTAGDSWHQPSLFRHDSVDSGVSKGAYAGITGNPSGWHSSSR-GHDGMSQRSGG 112
Query: 98 HGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEY--EREP 155
G+ R + FH+ K E + +KEDK E+ QFE EDFPSLNPE + +P
Sbjct: 113 GTGNHRHWNGSFHSRKGCAFQEKPPMEIREEKKEDKVEKLQFEEEDFPSLNPEAGKQHQP 172
Query: 156 NHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTG---- 211
+GVWE PP+ K + +MLVIKK + +D + F P NG
Sbjct: 173 CRPIGTPSGVWENPPSAKQPS-KMLVIKKVSKED-PAAAFSAAFTSPGSHHANGNKLSSV 230
Query: 212 -PSVYKGLVPKPAAPPTKPTQWKSQTKENKVGT-SFPHESTFGVGNFNAFKSTAKNFSPS 269
PSVYK LVPKP PP+KP WK+ E+K G+ S ES F + K +
Sbjct: 231 VPSVYKNLVPKPVPPPSKPNAWKANRMEHKSGSLSSSRESAF-TSPISVTKPVVLASGAA 289
Query: 270 TNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGS 329
+S KE + S+++ P++ + RLTKLTR TD+KSEFLK LK DR + E+
Sbjct: 290 LSSPKE-SPSSTTPPIEISSS--RLTKLTRRTTDRKSEFLKTLKDDRNGDFSEN------ 340
Query: 330 EKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSL 389
+D D NST + P+ENG Q + + +VLS SL
Sbjct: 341 -RDCDKLEDLEDNSTPE-------------PKENGEEGC-HQNGLALPVVEEGEVLSHSL 385
Query: 390 EAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFK 449
EAEHRLLK MGWQE ENDE C PLTEDE++EF + +EQL++NG KNG L++
Sbjct: 386 EAEHRLLKAMGWQEYPENDENCLPLTEDELKEFHMKTEQLRRNGFGKNGFLQSR--SSSL 443
Query: 450 FGPWKNSTFKPTTENDDTETSSSDTSDDD 478
F PW+ ST K E+ DTETSSS+TSDDD
Sbjct: 444 FSPWR-STCKAEFEDSDTETSSSETSDDD 471
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 45.8 bits (107), Expect = 9e-05
Identities = 77/354 (21%), Positives = 133/354 (37%), Gaps = 66/354 (18%)
Query: 14 PTPPSSTKVLTSSLKSSLNFEKHSENFAWTENRYDVNRRRHNSSDGFDSAIGRPNGGNFG 73
P+ S+K T +KSS + E+ S + + + + ++R + SD
Sbjct: 462 PSDIESSKSSTRRMKSSCDRERSSRSSSLSSHHS--SKRDWSKSD--------------- 504
Query: 74 RKEKNGWRTHG-RNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKED 132
K+ TH R+ + +H Y GSSRSR+ A KS H + + + K
Sbjct: 505 -KDVQSSLTHSSRDSYRSKSHSQSYSRGSSRSRT----ASKSSS-HSRSRSKSRSSSKSG 558
Query: 133 KRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQL 192
R+R S + + NK P P + + +Q
Sbjct: 559 HRKRASKSPRKTAS-------QLSENK------------PVKTEPLRATMAQNENVVVQ- 598
Query: 193 SGFPVVG-NLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTF 251
PVV N+P P+ + PS +K P P KP+ + Q + K P +ST+
Sbjct: 599 ---PVVAENIPVIPLSDSPPPSRWK-----PGQKPWKPSYERIQEMKAKTTHLLPIQSTY 650
Query: 252 GVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLNQ-QPRLTKLTRMRTDKKSEFLK 310
+ N S++ NS E ++S S D+ ++ PR +R R+ + + +
Sbjct: 651 SLANIKETGSSSSYHKREKNS--ESDQSTYSKYSDRSSESSPR----SRSRSSRSRSYSR 704
Query: 311 ALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENG 364
+ R R SR+ S + H+ N +R+ I ++G
Sbjct: 705 SYTRSRSLASSHSRSRSPSSRS------HSRNKYSDHSQCSRSSSYTSISSDDG 752
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 37.0 bits (84), Expect = 0.040
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 199 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 258
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 259 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 305
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 306 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 335
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 37.0 bits (84), Expect = 0.040
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 199 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 258
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 259 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 305
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 306 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 335
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 37.0 bits (84), Expect = 0.040
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 199 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 258
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 259 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 305
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 306 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 335
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 37.0 bits (84), Expect = 0.040
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 15/150 (10%)
Query: 199 GNLPSQPVKNGTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNA 258
GN P T ++ G P+ +A P+ T S+T+E +F + G+ +
Sbjct: 136 GNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVSAGQ 195
Query: 259 FKSTAKNFSPSTN-------------SVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKK 305
S++++ S S++ VK + S SP K P K+ + K
Sbjct: 196 ADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVK 253
Query: 306 SEFLKALKRDRVEEEHEDESRAGSEKDDDS 335
L KR + EE + S GSE ++++
Sbjct: 254 GGALPPAKRAKKPEEESESSEEGSESEEEA 283
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 37.0 bits (84), Expect = 0.040
Identities = 37/183 (20%), Positives = 72/183 (39%), Gaps = 23/183 (12%)
Query: 264 KNFSPSTN-------SVKECNRSNSSSPVDKLNQQPRLTKLTRM-----------RTDKK 305
K PST+ S +E +R + +P + + P+ + R D+K
Sbjct: 979 KRLRPSTSVDEEDEESERERDRDMADTPCELAKRDPKGVGVRRRPARPLELDSGGEEDEK 1038
Query: 306 SEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGN 365
+ + EEE E+E + DDDS + S + ++ ++ +++E G+
Sbjct: 1039 ESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASEKDE-----GD 1093
Query: 366 ASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVI 425
+ I +S T SS +E E + +E A E+E E +++
Sbjct: 1094 SDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEEEEEEEEEMV 1153
Query: 426 SEQ 428
+E+
Sbjct: 1154 AEE 1156
>gi|13435145 clusterin associated protein 1 isoform 2 [Homo sapiens]
Length = 247
Score = 37.0 bits (84), Expect = 0.040
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 279 SNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNL 338
+N +S L + KL R K+ E L++++ ++E + E + D
Sbjct: 38 NNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKF 97
Query: 339 HNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKE 398
N Q+ + + ++ + +I ++ E E RLLK
Sbjct: 98 QNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKL---------------KEEEKRLLKS 142
Query: 399 MGWQEDS-----ENDETCAPLTEDEMREFQVISEQLQKN--GLRKNGILKNGLICDFKFG 451
G +DS E+DE+ + L E + + Q E L + G R G ++ G
Sbjct: 143 -GSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGG-------- 193
Query: 452 PWKNSTFKPTTENDDTETSSSDTSDDDD 479
+ +N+D+E S D DDDD
Sbjct: 194 --------DSDDNEDSEESEIDMEDDDD 213
>gi|52345626 clusterin associated protein 1 isoform 1 [Homo sapiens]
Length = 413
Score = 37.0 bits (84), Expect = 0.040
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 279 SNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNL 338
+N +S L + KL R K+ E L++++ ++E + E + D
Sbjct: 204 NNVASDEANLEAKIEKRKLELERNRKRLETLQSVRPCFMDEYEKTEEELQKQYDTYLEKF 263
Query: 339 HNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKE 398
N Q+ + + ++ + +I ++ E E RLLK
Sbjct: 264 QNLTYLEQQLEDHHRMEQERFEEAKNTLCLIQNKL---------------KEEEKRLLKS 308
Query: 399 MGWQEDS-----ENDETCAPLTEDEMREFQVISEQLQKN--GLRKNGILKNGLICDFKFG 451
G +DS E+DE+ + L E + + Q E L + G R G ++ G
Sbjct: 309 -GSNDDSDIDIQEDDESDSELEERRLPKPQTAMEMLMQGRPGKRIVGTMQGG-------- 359
Query: 452 PWKNSTFKPTTENDDTETSSSDTSDDDD 479
+ +N+D+E S D DDDD
Sbjct: 360 --------DSDDNEDSEESEIDMEDDDD 379
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 36.6 bits (83), Expect = 0.052
Identities = 62/309 (20%), Positives = 105/309 (33%), Gaps = 74/309 (23%)
Query: 73 GRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKED 132
G KE+ + E GGS + SS E + E G E
Sbjct: 525 GEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS-----------EKEEGEQEEGETEA 573
Query: 133 KRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQL 192
+ E ++ EA++ + + E + +A E P KS P+ V +KG +
Sbjct: 574 EAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSP---- 629
Query: 193 SGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAP---------PTKPTQWKSQTKENKVGT 243
+P PV+ KG P P +P P P + K ++ +K
Sbjct: 630 --------VPKSPVEE-------KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPV 674
Query: 244 SFPHESTFGVGNFNAFKSTAK--NFSPSTNSVKECNRSNSSSPVDKLNQQPR-------- 293
+S KS A+ KE + V+K ++P+
Sbjct: 675 EEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKA 734
Query: 294 --------------LTKLTRMRTDKKS-EFLKALKRDRV----------EEEHEDESRAG 328
+TK ++ +K++ E K L++++ EEE D+ G
Sbjct: 735 ESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKG 794
Query: 329 SEKDDDSFN 337
S K+D + N
Sbjct: 795 SRKEDIAVN 803
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 36.6 bits (83), Expect = 0.052
Identities = 62/309 (20%), Positives = 105/309 (33%), Gaps = 74/309 (23%)
Query: 73 GRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKED 132
G KE+ + E GGS + SS E + E G E
Sbjct: 149 GEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSS-----------EKEEGEQEEGETEA 197
Query: 133 KRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQL 192
+ E ++ EA++ + + E + +A E P KS P+ V +KG +
Sbjct: 198 EAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSP---- 253
Query: 193 SGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAP---------PTKPTQWKSQTKENKVGT 243
+P PV+ KG P P +P P P + K ++ +K
Sbjct: 254 --------VPKSPVEE-------KGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVSKSPV 298
Query: 244 SFPHESTFGVGNFNAFKSTAK--NFSPSTNSVKECNRSNSSSPVDKLNQQPR-------- 293
+S KS A+ KE + V+K ++P+
Sbjct: 299 EEKAKSPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKA 358
Query: 294 --------------LTKLTRMRTDKKS-EFLKALKRDRV----------EEEHEDESRAG 328
+TK ++ +K++ E K L++++ EEE D+ G
Sbjct: 359 ESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKG 418
Query: 329 SEKDDDSFN 337
S K+D + N
Sbjct: 419 SRKEDIAVN 427
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 36.2 bits (82), Expect = 0.068
Identities = 51/184 (27%), Positives = 69/184 (37%), Gaps = 24/184 (13%)
Query: 56 SSDGFDSAIGRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHAG--- 112
SS +S + P GG+ GR +G T + T +I G G S R
Sbjct: 444 SSTASNSVVPPPQGGS-GRGSPSGGSTAEASDTLSIRSSGQLSGRSVSLRKLKRPPPPPR 502
Query: 113 KSQGLHENN--IPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPP 170
++ LH+ +PD G K ERKQ P+ R P S AG PP
Sbjct: 503 RTHSLHQRGLAVPDGPLGLPP-KPERKQ---------QPQLPRPPTTGGSEGAGAAPCPP 552
Query: 171 NP-KSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAP---- 225
NP S P + G ++ S + ++GT KGL PA+P
Sbjct: 553 NPANSWVPG---LSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQ 609
Query: 226 PTKP 229
P KP
Sbjct: 610 PPKP 613
>gi|115583677 sodium channel, voltage-gated, type I, alpha [Homo
sapiens]
Length = 1998
Score = 35.8 bits (81), Expect = 0.088
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
Query: 313 KRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQ 372
+R+R ++ + E G EKD+D F S + + + + + N + E +S
Sbjct: 497 RRNRRKKRKQKEQSGGEEKDEDEFQKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSL 556
Query: 373 I-IRSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQK 431
+ IR S F +SL + K++G + D +DE + R+ + ++
Sbjct: 557 LSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVP---RR 613
Query: 432 NGLRKNGIL 440
+G R+N L
Sbjct: 614 HGERRNSNL 622
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 35.8 bits (81), Expect = 0.088
Identities = 62/277 (22%), Positives = 109/277 (39%), Gaps = 43/277 (15%)
Query: 101 SSRSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAE---DFPSLNPEYEREPNH 157
SS S SS + S + +++ +D RE K E D + E ++P
Sbjct: 179 SSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKE 238
Query: 158 NKSL-----AAGVWEYPPNPKSRAPR----MLVIKKGNTKDLQLSGFPVVGN--LPSQPV 206
NK L + P P S+ P+ +L I G K P+ + L ++
Sbjct: 239 NKPLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRPPISDSEELSAKKR 298
Query: 207 KNGTGPSVYKGLVPKP-----AAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKS 261
K + +++K P + K + KS K KV E++ KS
Sbjct: 299 KKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKV--KIESETS------EKKKS 350
Query: 262 TAKNFS----PSTNSVKE--CNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRD 315
T F P+ + V+E ++S+S P + + T +T ++ L+++ +D
Sbjct: 351 TLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGP-LRSIMKD 409
Query: 316 RVEEEHEDESRAGSEKDDDSFNLHNSNSTHQERDINR 352
+++E+ES E +D N N + ER +NR
Sbjct: 410 LHSDDNEEES---DEVED------NDNDSEMERPVNR 437
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 35.8 bits (81), Expect = 0.088
Identities = 47/181 (25%), Positives = 58/181 (32%), Gaps = 33/181 (18%)
Query: 65 GRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHA---GKSQGLHENN 121
GR GG F R E G R G +N RGG GG R + G SQ NN
Sbjct: 519 GRGGGGGFQRYENRGPPGGNRGGFQN---RGGGSGGGGNYRGGFNRSGGGGYSQNRWGNN 575
Query: 122 IPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRM-- 179
DN R + + P P + P + PP P S +P
Sbjct: 576 NRDNNNSNNRGSYNRAP-QQQPPPQQPPPPQPPP-----------QQPPPPPSYSPARNP 623
Query: 180 -----------LVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTK 228
+ NT +S + SQP N G S +G P PP
Sbjct: 624 PGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYS--QGYTAPPPPPPPP 681
Query: 229 P 229
P
Sbjct: 682 P 682
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 35.8 bits (81), Expect = 0.088
Identities = 47/181 (25%), Positives = 58/181 (32%), Gaps = 33/181 (18%)
Query: 65 GRPNGGNFGRKEKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHA---GKSQGLHENN 121
GR GG F R E G R G +N RGG GG R + G SQ NN
Sbjct: 619 GRGGGGGFQRYENRGPPGGNRGGFQN---RGGGSGGGGNYRGGFNRSGGGGYSQNRWGNN 675
Query: 122 IPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAPRM-- 179
DN R + + P P + P + PP P S +P
Sbjct: 676 NRDNNNSNNRGSYNRAP-QQQPPPQQPPPPQPPP-----------QQPPPPPSYSPARNP 723
Query: 180 -----------LVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKPAAPPTK 228
+ NT +S + SQP N G S +G P PP
Sbjct: 724 PGASTYNKNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYS--QGYTAPPPPPPPP 781
Query: 229 P 229
P
Sbjct: 782 P 782
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 35.8 bits (81), Expect = 0.088
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 312 LKRDRVEEEHEDESRAGSEKDDDSFNLHNSNSTHQ-ERDINRNFDENEIPQENGNASVIS 370
L++D EEE E E GS ++DD + TH RD E+E +E G+ ++
Sbjct: 477 LRKDDSEEEKEKEEDPGSHEEDDESSEQGEKGTHHGSRD-----QEDEEDEEEGHGLSLN 531
Query: 371 QQIIRSSTFPQTDVLSSSLEAEHRLLKEMGWQED----SENDETCAPLTEDEMREFQVIS 426
Q+ E E +E +ED E E APL+ D E +
Sbjct: 532 QE-----------------EEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSEEEEEEE 574
Query: 427 EQLQKN 432
E L+++
Sbjct: 575 EGLEED 580
Score = 30.0 bits (66), Expect = 4.9
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 381 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 440
+ +V+SS E H +L+ D E+DE E+E E Q + R +G
Sbjct: 165 EDEVVSS--EHHHHILRHGHRGHDGEDDEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSE 222
Query: 441 KNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDDV 480
++ + D + + E+DD + D DDDDV
Sbjct: 223 EDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDDDDDDDDDV 262
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.12
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 159 KSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KN 208
K + PP P+ R I + D +LS PV NLP Q K
Sbjct: 580 KEAKPSIGSLPPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKA 635
Query: 209 GTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 252
GP++ P+PA PP K T W + + +G + P ++T G
Sbjct: 636 MLGPAIPPKATPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.12
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 159 KSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KN 208
K + PP P+ R I + D +LS PV NLP Q K
Sbjct: 580 KEAKPSIGSLPPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKA 635
Query: 209 GTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 252
GP++ P+PA PP K T W + + +G + P ++T G
Sbjct: 636 MLGPAIPPKATPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 35.4 bits (80), Expect = 0.12
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 159 KSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPV----------KN 208
K + PP P+ R I + D +LS PV NLP Q K
Sbjct: 580 KEAKPSIGSLPPKPRLEGGR---ICENGADDDKLSK-PVAKNLPPQSTTLLPTTSLQPKA 635
Query: 209 GTGPSVYKGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFG 252
GP++ P+PA PP K T W + + +G + P ++T G
Sbjct: 636 MLGPAIPPKATPEPAIPP-KATLWPATPPKATLGPATPLKATSG 678
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 35.4 bits (80), Expect = 0.12
Identities = 48/277 (17%), Positives = 108/277 (38%), Gaps = 22/277 (7%)
Query: 103 RSRSSIFHAGKSQGLHENNIPDNETGRKEDKRERKQFEAEDFPSLNPEYEREPNHNKSLA 162
+SRS + GKS+ + + ++ R E +E+K ++ + + + R P+ +
Sbjct: 291 KSRSPVDLRGKSKDRRSRS-KERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRS 349
Query: 163 AGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLPSQPVKNGTGPSVYKGLVPKP 222
P P+ ++ R S P++ + S+ K+ PS + L P
Sbjct: 350 PKRRSLSPKPRDKSRR--------------SRSPLLNDRRSKQSKS---PS--RTLSPGR 390
Query: 223 AAPPTKPTQWKSQTKENKVGT--SFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSN 280
A + + + + ++ + + P + + S +SP+ + R
Sbjct: 391 RAKSRSLERKRREPERRRLSSPRTRPRDDILSRRERSKDASPINRWSPTRRRSRSPIRRR 450
Query: 281 SSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLHN 340
S SP+ + R ++ R R + + +R R SR+ ++D +L
Sbjct: 451 SRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSE 510
Query: 341 SNSTHQERDINRNFDENEIPQENGNASVISQQIIRSS 377
QE + N ++ ++ +E+ A + ++I R +
Sbjct: 511 GMKVEQESSSDDNLEDFDVEEEDEEALIEQRRIQRQA 547
Score = 34.7 bits (78), Expect = 0.20
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
Query: 230 TQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVDKLN 289
T+ +S K++K G E T + K K+ SPS S + S SP +
Sbjct: 192 TRHRSDKKKSKGGIEIVKEKT----TRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRR 247
Query: 290 QQPRLTKLTRMRTDKKSEFLKALKRDRVEEE--HEDESRAGSEKDDDSFNLHNSNSTHQE 347
Q ++ K DK K+ +DR + +E SR +K +L + +
Sbjct: 248 SQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRS 307
Query: 348 RDINRNFDENEIPQE 362
R R +E +E
Sbjct: 308 RSKERKSKRSETDKE 322
>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 1 [Homo sapiens]
Length = 559
Score = 35.0 bits (79), Expect = 0.15
Identities = 28/153 (18%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 216 KGLVPKPAAPPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKE 275
KG P P PP + + + T ++ ++ + + G+ +A ++ + S S+ S K+
Sbjct: 269 KGGPPPPPPPPPRASSKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFSDKK 328
Query: 276 CNRSNSSSPVDKL--NQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDD 333
+ SS+ +K+ +PR K + SE + K + + + S + D
Sbjct: 329 PAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSD 388
Query: 334 DSFNLHNSNSTHQERDINRNFDENEIPQENGNA 366
F ++S R + + E +++ ++
Sbjct: 389 SDFEPSQNHSQGPLRSMVEDLQSEESDEDDSSS 421
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 35.0 bits (79), Expect = 0.15
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 74 RKEKNGWRTHGRNGTENINHRGGY--HGGSSRSRSSIFHAGKSQGLHENNIPDNETGRKE 131
++E WR + R N +R Y G S+SRS +S+ D + R
Sbjct: 137 KREDGKWRDYDRYYERNELYREKYDWRRGRSKSRSKSRGLSRSRSRSRGRSKDRDPNRNV 196
Query: 132 DKRERKQFEAED---FPSLNPEYEREPNHNKSLAAGVWEYPPNPKSRAP 177
+ RER +F++E S P PN ++ ++G P AP
Sbjct: 197 EHRERSKFKSERNDLESSYVPVSAPPPNSSEQYSSGAQSIPSTVTVIAP 245
>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
sapiens]
Length = 834
Score = 34.7 bits (78), Expect = 0.20
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 225 PPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSP 284
PP PT T + T+ P ++ +F+ F ST +P+T+S SN+S+P
Sbjct: 471 PPALPTTTTVTTFSQSLPTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTP 530
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 34.7 bits (78), Expect = 0.20
Identities = 37/219 (16%), Positives = 79/219 (36%), Gaps = 10/219 (4%)
Query: 261 STAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEE 320
S + N S S+NS + SNSS D + + R+D + + D
Sbjct: 818 SDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSS 877
Query: 321 HEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFP 380
+S +E + S + +SNS+ + + N ++ + ++S S S++
Sbjct: 878 DSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSD 937
Query: 381 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 440
++ SS ++ + DS N + + + S+ + +
Sbjct: 938 SSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDS 997
Query: 441 KNGLICDFKFGPWKNSTFKPTTENDDTETSSSDTSDDDD 479
+ NS+ + + ++SSD+S+ D
Sbjct: 998 SDS----------SNSSDSSDSSDSSDSSNSSDSSNSSD 1026
Score = 33.5 bits (75), Expect = 0.44
Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 1/220 (0%)
Query: 261 STAKNFSPSTNSVKECNRSNSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEE 320
S + + S S+NS + SNSS D N + S+ + D
Sbjct: 771 SDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSS 830
Query: 321 HEDESRAGSEKDDDSFNLHNSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFP 380
+S S+ D S + S+S R + N ++ ++ N+S S + +
Sbjct: 831 DSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSN 890
Query: 381 QTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGIL 440
+D SS ++ + S++ + + S+ + +
Sbjct: 891 SSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDS 950
Query: 441 KNGLICDFKFGPWKNSTFKPTTENDDTETS-SSDTSDDDD 479
N +S + +D +++S SSD+SD D
Sbjct: 951 SNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSD 990
Score = 32.7 bits (73), Expect = 0.75
Identities = 83/440 (18%), Positives = 164/440 (37%), Gaps = 41/440 (9%)
Query: 59 GFDSAIGRPNGGNFGRKEKNGWRT----HGRNGTENINHRGGY----HGGSSRSRSSIFH 110
G D++ G P+G E G NG ++ N+ G HG SSI
Sbjct: 238 GLDNSDGSPSGNGADEDEDEGSGDDEDEEAGNGKDSSNNSKGQEGQDHGKEDDHDSSIGQ 297
Query: 111 AGKSQGLHE---NNIPDNET-GRKEDKRERKQFEA-EDFPSLNPEYEREPNHNKSLAAGV 165
S+ ++ P NE G K K E ED S E ++ NH +S
Sbjct: 298 NSDSKEYYDPEGKEDPHNEVDGDKTSKSEENSAGIPEDNGSQRIEDTQKLNHRESKRV-- 355
Query: 166 WEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLP-SQPVKNGTGPSVYKGLVPKPAA 224
N ++ + K K +++ G P GN ++ V G KG
Sbjct: 356 ----ENRITKESETHAVGKSQDKGIEIKG-PSSGNRNITKEVGKGNEGKEDKGQHGMILG 410
Query: 225 PPTKPTQWK-----SQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRS 279
TQ + ++++ G H +T N + + S +F + + N S
Sbjct: 411 KGNVKTQGEVVNIEGPGQKSEPGNKVGHSNTGSDSNSDGYDSY--DFDDKSMQGDDPNSS 468
Query: 280 NSSSPVDKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESRAGSEKDDDSFNLH 339
+ S+ D N + +R S+ K ++ + S + +DDDS +
Sbjct: 469 DESNGNDDANSESDNNSSSRGDASYNSDESK---------DNGNGSDSKGAEDDDSDSTS 519
Query: 340 NSNSTHQERDINRNFDENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLLKEM 399
++N++ + N D+N+ ++G S S + +D SS +++
Sbjct: 520 DTNNSDSNGNGNNGNDDND-KSDSGKGKSDSSDSDSSDSSNSSDSSDSS-DSDSSDSNSS 577
Query: 400 GWQEDSENDETCAPLTEDEMREFQVISEQLQKNGLRKNGILKNGLICDFKFGPWKNSTFK 459
+ S++D + + ++ + + S+ + + + ++ +
Sbjct: 578 SDSDSSDSDSSDS--SDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSD 635
Query: 460 PTTENDDTETSSSDTSDDDD 479
+++D ++++SSD+SD+ D
Sbjct: 636 SDSKSDSSDSNSSDSSDNSD 655
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 34.7 bits (78), Expect = 0.20
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 227 TKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSPVD 286
+K K + KE K + P ++ + ++ S S + +RS + SP
Sbjct: 308 SKTRDKKKEDKEKKRSKTPP----------KSYSTARRSRSASRERRRRRSRSGTRSP-- 355
Query: 287 KLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDE-----SRAGSEKDDDSFNLHNS 341
++PR K R+ K K+D+ +E DE S+ KD + S
Sbjct: 356 ---KKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKS 412
Query: 342 NSTHQERDINRNFDENE 358
S + + R++DE E
Sbjct: 413 ESDKDVKQVTRDYDEEE 429
>gi|150378545 POM121 membrane glycoprotein (rat)-like [Homo sapiens]
Length = 987
Score = 34.7 bits (78), Expect = 0.20
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 225 PPTKPTQWKSQTKENKVGTSFPHESTFGVGNFNAFKSTAKNFSPSTNSVKECNRSNSSSP 284
PP PT T + T+ P ++ +F+ F ST +P+T+S SN+S+P
Sbjct: 622 PPALPTTTTVTTFSQSLPTAVPTATSSSAADFSGFGSTLATSAPATSSQPTLTFSNTSTP 681
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,298,194
Number of Sequences: 37866
Number of extensions: 1100190
Number of successful extensions: 4835
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 4487
Number of HSP's gapped (non-prelim): 443
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.