Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 187607437
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187607437 hypothetical protein LOC27013 [Homo sapiens]
(410 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187607437 hypothetical protein LOC27013 [Homo sapiens] 855 0.0
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 40 0.004
gi|148839296 immunoglobulin-like and fibronectin type III domain... 39 0.007
gi|4885323 G protein-coupled receptor 37 [Homo sapiens] 39 0.009
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 38 0.015
gi|7706501 WW domain binding protein 11 [Homo sapiens] 38 0.019
gi|14719400 ADP-ribosylation factor binding protein 3 isoform sh... 37 0.025
gi|20336267 ADP-ribosylation factor binding protein 3 isoform lo... 37 0.025
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 37 0.042
gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 37 0.042
gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 37 0.042
gi|239757739 PREDICTED: hypothetical protein [Homo sapiens] 36 0.055
gi|239752232 PREDICTED: hypothetical protein [Homo sapiens] 36 0.055
gi|47132519 Ras association and pleckstrin homology domains 1 is... 36 0.055
gi|68563515 keratinocyte proline-rich protein [Homo sapiens] 36 0.055
gi|191252814 RIMS binding protein 3B [Homo sapiens] 36 0.072
gi|191252806 RIMS binding protein 3C [Homo sapiens] 36 0.072
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 36 0.072
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 36 0.072
gi|88703045 proline rich 11 [Homo sapiens] 36 0.072
gi|160707881 formin 2 [Homo sapiens] 35 0.12
gi|206597502 NESH protein isoform 2 [Homo sapiens] 35 0.16
gi|7705981 NESH protein isoform 1 [Homo sapiens] 35 0.16
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.21
gi|52485606 formin-like 2 [Homo sapiens] 34 0.21
gi|60460889 Myb protein P42POP [Homo sapiens] 34 0.21
gi|13699803 WAS protein family, member 3 [Homo sapiens] 34 0.21
gi|157785645 SPEG complex locus [Homo sapiens] 34 0.21
gi|157168329 formin 1 [Homo sapiens] 34 0.27
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 34 0.27
>gi|187607437 hypothetical protein LOC27013 [Homo sapiens]
Length = 410
Score = 855 bits (2209), Expect = 0.0
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MDLTGLLLDEEGTFSLAGFQDFTFLPGHQKLSARIRRRLYYGWDWEADCSLEELSSPVAD 60
MDLTGLLLDEEGTFSLAGFQDFTFLPGHQKLSARIRRRLYYGWDWEADCSLEELSSPVAD
Sbjct: 1 MDLTGLLLDEEGTFSLAGFQDFTFLPGHQKLSARIRRRLYYGWDWEADCSLEELSSPVAD 60
Query: 61 IAVELLQKAAPSPIRRLQKKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSS 120
IAVELLQKAAPSPIRRLQKKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSS
Sbjct: 61 IAVELLQKAAPSPIRRLQKKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSS 120
Query: 121 DLFLISMMVASKYLYDEGEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPRE 180
DLFLISMMVASKYLYDEGEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPRE
Sbjct: 121 DLFLISMMVASKYLYDEGEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPRE 180
Query: 181 IFEVLSWLESCVAEQQGRWRGWYTYTDLCVLLEQPTWQLALGSLCQRLVKLSCLLAVAYV 240
IFEVLSWLESCVAEQQGRWRGWYTYTDLCVLLEQPTWQLALGSLCQRLVKLSCLLAVAYV
Sbjct: 181 IFEVLSWLESCVAEQQGRWRGWYTYTDLCVLLEQPTWQLALGSLCQRLVKLSCLLAVAYV 240
Query: 241 SSVALAVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLE 300
SSVALAVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLE
Sbjct: 241 SSVALAVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLE 300
Query: 301 GSMGLRSLWGSLLASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVP 360
GSMGLRSLWGSLLASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVP
Sbjct: 301 GSMGLRSLWGSLLASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVP 360
Query: 361 TALSSPWYHTYGLAPPWPWSPVPLSLPQPQQCSLFSVMELARLKSFVFPG 410
TALSSPWYHTYGLAPPWPWSPVPLSLPQPQQCSLFSVMELARLKSFVFPG
Sbjct: 361 TALSSPWYHTYGLAPPWPWSPVPLSLPQPQQCSLFSVMELARLKSFVFPG 410
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 40.0 bits (92), Expect = 0.004
Identities = 41/146 (28%), Positives = 56/146 (38%), Gaps = 25/146 (17%)
Query: 263 PTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLE---GSMGLRSLWGSLLASLTPP 319
PT P + P + SV +P+ ++S+ L G +G+ SL PP
Sbjct: 843 PTEQVPSQEMPLLARPSPPVQSVSPAVPTPPSMSAALPFPAGGLGMPP-------SLPPP 895
Query: 320 PLPPPD------PPAPPTLLHNCHLCQK--LQRDSPTCHACLHPNRTVPTALSSPWYHTY 371
PL PP P P H L SP+ + CL P TVP +P Y
Sbjct: 896 PLQPPSLPLSMGPVLPDPFTHYAPLPSWPCYPHVSPSGYPCLPPPPTVPLVSGTP--GAY 953
Query: 372 GLAP----PWPWSPVPLSLPQPQQCS 393
+ P PW P P+S P C+
Sbjct: 954 AVPPTCSVPWAPPPAPVS-PYSSTCT 978
>gi|148839296 immunoglobulin-like and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 868
Score = 39.3 bits (90), Expect = 0.007
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 288 CLPSLANVSSCLEGSMGLRSLWGSLLASLTPPPLPPPDPPAPPTLLHNCH 337
CLPS A C + S+ LRS GS+ A LT + PDPP P + +CH
Sbjct: 226 CLPS-AGRKDCGQYSVTLRSEGGSVQAELTLQVIDKPDPPQGPMEVQDCH 274
>gi|4885323 G protein-coupled receptor 37 [Homo sapiens]
Length = 613
Score = 38.9 bits (89), Expect = 0.009
Identities = 40/120 (33%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 220 ALGSLCQRLVKLSCLLAVAYVSSVALAVASVAVIHQSLGLSCIPTP---------GPPDL 270
A G+L R+ +L LL + +S AL VA + LG SC PT GP
Sbjct: 3 APGALLARMSRLLLLLLLKVSASSALGVAPASRNETCLGESCAPTVIQRRGRDAWGP--- 59
Query: 271 GLTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLRSLWG-SLLASLTPPPLPPPDPPAP 329
G ++R +L P Q LA S L + G G AS PP PP PP P
Sbjct: 60 GNSARDVLRARAPREEQGAAFLAGPSWDLPAAPGRDPAAGRGAEASAAGPPGPPTRPPGP 119
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 38.1 bits (87), Expect = 0.015
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 320 PLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHAC--LHPNRTVPTALSSPWYHTYGLAPPW 377
PLPP PPA P LH C Q+L +P+CHA HP HT G P
Sbjct: 913 PLPPDAPPAEPPGLH-CSSSQQLLSSTPSCHAAPPAHPLLA----------HTGGHQSPL 961
Query: 378 PWSPVPLSLP 387
P VP +LP
Sbjct: 962 P-PLVPAALP 970
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 37.7 bits (86), Expect = 0.019
Identities = 42/128 (32%), Positives = 46/128 (35%), Gaps = 5/128 (3%)
Query: 263 PTPGPPDLGLTSRCLLEPCIP--SVPQCLPSLANVSSCLEGSMGLRSLWGSLLASLTPPP 320
P PGPP LG L P P +P P A G GLR LL PP
Sbjct: 406 PMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPG 465
Query: 321 LPPPDPPAPPT-LLHNCHLCQKLQRDSPTCHACLHPNRTVPTALSSPWYHTYGLAPPWPW 379
PP PP PP L R P + P R P + P G APP +
Sbjct: 466 RPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPR--PGMMRPPLVPPLGPAPPGLF 523
Query: 380 SPVPLSLP 387
P PL P
Sbjct: 524 PPAPLPNP 531
>gi|14719400 ADP-ribosylation factor binding protein 3 isoform short
[Homo sapiens]
Length = 690
Score = 37.4 bits (85), Expect = 0.025
Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 40/165 (24%)
Query: 256 SLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCL-PSLANVSSCLEGSMGLRSLWGSL-- 312
SL P P PP G+ P +P PQ P + SS E ++G S +L
Sbjct: 304 SLSSVLAPAPTPPSSGI-------PILPPPPQASGPPRSRSSSQAEATLGPSSTSNALSW 356
Query: 313 -------LASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRD------SPTCHAC------- 352
L P P PP A + HL Q+ Q D P AC
Sbjct: 357 LDEELLCLGLADPAPNVPPKESAGNS---QWHLLQREQSDLDFFSPRPGTAACGASDAPL 413
Query: 353 LHPNRTVPTALSSPWYHTYGLAPPWPWSPVPLSLPQPQQ-CSLFS 396
L P+ ++ +P L PP+P VP S+P P SLFS
Sbjct: 414 LQPSAPSSSSSQAP------LPPPFPAPVVPASVPAPSAGSSLFS 452
>gi|20336267 ADP-ribosylation factor binding protein 3 isoform long
[Homo sapiens]
Length = 723
Score = 37.4 bits (85), Expect = 0.025
Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 40/165 (24%)
Query: 256 SLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCL-PSLANVSSCLEGSMGLRSLWGSL-- 312
SL P P PP G+ P +P PQ P + SS E ++G S +L
Sbjct: 337 SLSSVLAPAPTPPSSGI-------PILPPPPQASGPPRSRSSSQAEATLGPSSTSNALSW 389
Query: 313 -------LASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRD------SPTCHAC------- 352
L P P PP A + HL Q+ Q D P AC
Sbjct: 390 LDEELLCLGLADPAPNVPPKESAGNS---QWHLLQREQSDLDFFSPRPGTAACGASDAPL 446
Query: 353 LHPNRTVPTALSSPWYHTYGLAPPWPWSPVPLSLPQPQQ-CSLFS 396
L P+ ++ +P L PP+P VP S+P P SLFS
Sbjct: 447 LQPSAPSSSSSQAP------LPPPFPAPVVPASVPAPSAGSSLFS 485
>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
[Homo sapiens]
Length = 462
Score = 36.6 bits (83), Expect = 0.042
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 313 LASLTPPPLPPPDP-------PAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTAL 363
L L PPP+PPP P P PP +H HL R P H + P +P AL
Sbjct: 225 LMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPP--HLAVPPPGAIPPAL 280
>gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
[Homo sapiens]
Length = 471
Score = 36.6 bits (83), Expect = 0.042
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 313 LASLTPPPLPPPDP-------PAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTAL 363
L L PPP+PPP P P PP +H HL R P H + P +P AL
Sbjct: 234 LMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPP--HLAVPPPGAIPPAL 289
>gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
[Homo sapiens]
Length = 514
Score = 36.6 bits (83), Expect = 0.042
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 313 LASLTPPPLPPPDP-------PAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTAL 363
L L PPP+PPP P P PP +H HL R P H + P +P AL
Sbjct: 277 LMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPP--HLAVPPPGAIPPAL 332
>gi|239757739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 36.2 bits (82), Expect = 0.055
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 349 CHACLHPNRTVPTALSSPWYHTYGLAPPWPWSPVPLSLPQP----QQCSLFSVMELARLK 404
C A + TVP P G APPWPW+ PL P Q SL L
Sbjct: 91 CSAIFEVSTTVPWPRPRPGPFPRGPAPPWPWTAWPLCSSFPGSRMQPASLQETQPRLVLP 150
Query: 405 SFVFPG 410
VFPG
Sbjct: 151 LRVFPG 156
>gi|239752232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 36.2 bits (82), Expect = 0.055
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 349 CHACLHPNRTVPTALSSPWYHTYGLAPPWPWSPVPLSLPQP----QQCSLFSVMELARLK 404
C A + TVP P G APPWPW+ PL P Q SL L
Sbjct: 91 CSAIFEVSTTVPWPRPRPGPFPRGPAPPWPWTAWPLCSSFPGSRMQPASLQETQPRLVLP 150
Query: 405 SFVFPG 410
VFPG
Sbjct: 151 LRVFPG 156
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 36.2 bits (82), Expect = 0.055
Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 263 PTPGPPDLGLTSRCLLE-PCIPSVPQCLPSLANVSSCLEGSMGLRSLWG-SLLASLTPPP 320
P P PP G L PC PS+PQ S + + + + +A TPPP
Sbjct: 714 PPPPPPTPGSAMAQLKPAPCAPSLPQF--------SAPPPPLKIHQVQHITQVAPPTPPP 765
Query: 321 LPP---PDPP-APPTLLHNCHLCQKLQRDSPTCHACLHPNRT--VPTALSSPWYHTYGLA 374
PP P PP APP L + +P P T VP A P + +
Sbjct: 766 PPPIPAPLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIP 825
Query: 375 PPWPWSPVPLSLPQ-PQQCS 393
P P PVP+ P P+Q S
Sbjct: 826 PSPPTPPVPVPPPTLPKQQS 845
Score = 35.4 bits (80), Expect = 0.094
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 316 LTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTALSSPWYHTYGLAP 375
+ PPP PPP PP P + + + +P + + P H +AP
Sbjct: 708 VVPPPPPPPPPPTPGSAMAQL-------KPAPCAPSLPQFSAPPPPLKIHQVQHITQVAP 760
Query: 376 PWPWSPVPLSLPQPQQ 391
P P P P+ P P Q
Sbjct: 761 PTPPPPPPIPAPLPPQ 776
Score = 31.2 bits (69), Expect = 1.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 314 ASLTPPPLPPPDPPAPP 330
AS PPLPPP PP PP
Sbjct: 621 ASQPSPPLPPPPPPPPP 637
Score = 30.8 bits (68), Expect = 2.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 316 LTPPPLPPPDPPAPP 330
L PPP PPP PP PP
Sbjct: 628 LPPPPPPPPPPPPPP 642
Score = 30.8 bits (68), Expect = 2.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 318 PPPLPPPDPPAPPTL 332
PPP PPP PP PP L
Sbjct: 635 PPPPPPPPPPPPPPL 649
Score = 29.6 bits (65), Expect = 5.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 318 PPPLPPPDPPAPP 330
PPP PPP PP PP
Sbjct: 631 PPPPPPPPPPPPP 643
Score = 29.6 bits (65), Expect = 5.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 318 PPPLPPPDPPAPP 330
PPP PPP PP PP
Sbjct: 632 PPPPPPPPPPPPP 644
Score = 29.6 bits (65), Expect = 5.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 318 PPPLPPPDPPAPP 330
PPP PPP PP PP
Sbjct: 633 PPPPPPPPPPPPP 645
Score = 29.6 bits (65), Expect = 5.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 318 PPPLPPPDPPAPP 330
PPP PPP PP PP
Sbjct: 634 PPPPPPPPPPPPP 646
>gi|68563515 keratinocyte proline-rich protein [Homo sapiens]
Length = 579
Score = 36.2 bits (82), Expect = 0.055
Identities = 42/150 (28%), Positives = 53/150 (35%), Gaps = 23/150 (15%)
Query: 260 SCIPTPGPPDLGLTSRCLLE---PCIPSV--PQCLPSLANVSSCLEGSMGLRSLWGSLLA 314
SC GP +C +E PC P PQ P S G + WG+
Sbjct: 316 SCSQRRGP-------KCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQPSWGASCP 368
Query: 315 SLTPPPLPPPDPP-APPTLLHNCHLCQKLQRDSPTCHACLHPN---------RTVPTALS 364
L P P P P PP L C + P L P R +P LS
Sbjct: 369 ELRPHVEPRPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRPRPLPRQLS 428
Query: 365 SPWYHTYGLAPPWPWSPVPLSLPQPQQCSL 394
P + L P +P P+ LP+P QC +
Sbjct: 429 EPCLYPEPLPALRP-TPRPVPLPRPGQCEI 457
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 35.8 bits (81), Expect = 0.072
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 212 LEQPTWQLALGSLCQRLVKLSCLLAVAYVSSVALAVASVAVIHQSLGLSCIPTPGPPDLG 271
LE+P Q + GS K +C L S+ A V V +SLGL PD
Sbjct: 225 LEEPLPQTSSGSC--HAPKPACQLG-----SLDSLSAEVGVRSRSLGLVSSACSSSPDGL 277
Query: 272 LTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLR-------SLWGSLLASLTPPPLPPP 324
L++ C P C SL + S + S S GS S P PLPPP
Sbjct: 278 LSTHASSLDCF--APACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPP 335
Query: 325 DPPAPPTLLHN 335
PP+ L N
Sbjct: 336 PPPSAHRKLSN 346
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 35.8 bits (81), Expect = 0.072
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 212 LEQPTWQLALGSLCQRLVKLSCLLAVAYVSSVALAVASVAVIHQSLGLSCIPTPGPPDLG 271
LE+P Q + GS K +C L S+ A V V +SLGL PD
Sbjct: 225 LEEPLPQTSSGSC--HAPKPACQLG-----SLDSLSAEVGVRSRSLGLVSSACSSSPDGL 277
Query: 272 LTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLR-------SLWGSLLASLTPPPLPPP 324
L++ C P C SL + S + S S GS S P PLPPP
Sbjct: 278 LSTHASSLDCF--APACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPP 335
Query: 325 DPPAPPTLLHN 335
PP+ L N
Sbjct: 336 PPPSAHRKLSN 346
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 35.8 bits (81), Expect = 0.072
Identities = 41/131 (31%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 212 LEQPTWQLALGSLCQRLVKLSCLLAVAYVSSVALAVASVAVIHQSLGLSCIPTPGPPDLG 271
LE+P Q + GS K +C L S+ A V V +SLGL PD
Sbjct: 225 LEEPLPQTSSGSC--HAPKPACQLG-----SLDSLSAEVGVRSRSLGLVSSACSSSPDGL 277
Query: 272 LTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLR-------SLWGSLLASLTPPPLPPP 324
L++ C P C SL + S + S S GS S P PLPPP
Sbjct: 278 LSTHASSLDCF--APACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPP 335
Query: 325 DPPAPPTLLHN 335
PP+ L N
Sbjct: 336 PPPSAHRKLSN 346
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 35.8 bits (81), Expect = 0.072
Identities = 40/120 (33%), Positives = 51/120 (42%), Gaps = 26/120 (21%)
Query: 263 PTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSC-LEGSMGLRSLWGSLLASLTPPPL 321
P P PP L L +PC P+ P LP+LA +C L S + + +TP
Sbjct: 280 PPPPPPVLPL------QPCSPAQPPVLPALAPAPACPLPTSPPVPA------PHVTPHAP 327
Query: 322 PPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNR---TVPTALSSPWYHTYGLAPPWP 378
PPD P P ++ C++L P A L P R P A SSP APP P
Sbjct: 328 GPPDHPNQPPMM----TCERL----PCPTAGLGPLREEAMKPGAASSPLQQV--PAPPLP 377
>gi|88703045 proline rich 11 [Homo sapiens]
Length = 360
Score = 35.8 bits (81), Expect = 0.072
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 318 PPPLPPPDPPAPPTLLHNCHLCQKLQ 343
PPPLPPP PP P LL L + LQ
Sbjct: 190 PPPLPPPPPPLAPVLLRKPSLAKALQ 215
Score = 29.6 bits (65), Expect = 5.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 318 PPPLPPPDPPAPPTL 332
PPP PPP PP PP L
Sbjct: 186 PPPPPPPLPPPPPPL 200
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 35.0 bits (79), Expect = 0.12
Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 40/136 (29%)
Query: 258 GLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLRSLWGSLLASLT 317
GL +P P PP G+T L IP P L G+ +
Sbjct: 872 GLGMVPPPPPPLPGMTVPTLPSTAIPQPP--------------------PLQGTEMLPPP 911
Query: 318 PPPLP----PPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTALSSPWYHTYGL 373
PPPLP PP PP P + P A + P +P A P
Sbjct: 912 PPPLPGAGIPPPPPLPGA---------GILPLPPLPGAGIPPPPPLPGAAIPP------- 955
Query: 374 APPWPWSPVPLSLPQP 389
PP P + +PL P P
Sbjct: 956 PPPLPGAGIPLPPPLP 971
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 20/171 (11%)
Query: 225 CQRLVKLSCLLAVAY-VSSVALAVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIP 283
C+R + CL + + + ++ ++ + + + TP LG R +P
Sbjct: 131 CRRPLNFGCLDDIGHGIKDLSTQLSRTGTLSRK-SIKAPATPASATLGRPPRIPEPVHLP 189
Query: 284 SVPQCLPSLANVSSCLEGSMGLRSLWGSLL----ASLTPPPLPPP-DPPAPPTLLHNCHL 338
VP S A+ +S L + + G+ A+ PPLP DPP PP +
Sbjct: 190 VVPDGRLSAASSASSLASAGSAEGVGGAPTPKGQAAPPAPPLPSSLDPPPPPAAVEVFQR 249
Query: 339 CQKLQRDSPTCHACLHPNRTVPTALSSPWYHTYGLAPPWPWSPVPLSLPQP 389
L+ SP P+ +P L P PP P L LP P
Sbjct: 250 PPTLEELSPP-----PPDEELPLPLDLP--------PPPPLDGDELGLPPP 287
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 20/171 (11%)
Query: 225 CQRLVKLSCLLAVAY-VSSVALAVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIP 283
C+R + CL + + + ++ ++ + + + TP LG R +P
Sbjct: 137 CRRPLNFGCLDDIGHGIKDLSTQLSRTGTLSRK-SIKAPATPASATLGRPPRIPEPVHLP 195
Query: 284 SVPQCLPSLANVSSCLEGSMGLRSLWGSLL----ASLTPPPLPPP-DPPAPPTLLHNCHL 338
VP S A+ +S L + + G+ A+ PPLP DPP PP +
Sbjct: 196 VVPDGRLSAASSASSLASAGSAEGVGGAPTPKGQAAPPAPPLPSSLDPPPPPAAVEVFQR 255
Query: 339 CQKLQRDSPTCHACLHPNRTVPTALSSPWYHTYGLAPPWPWSPVPLSLPQP 389
L+ SP P+ +P L P PP P L LP P
Sbjct: 256 PPTLEELSPP-----PPDEELPLPLDLP--------PPPPLDGDELGLPPP 293
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 34.3 bits (77), Expect = 0.21
Identities = 47/161 (29%), Positives = 59/161 (36%), Gaps = 9/161 (5%)
Query: 236 AVAYVSSVALAVASVAVIHQSLGLSCIP-TPGPPDLG--LTSRCLLEPCIPSVPQCLPSL 292
A+ +SS LA S + QS +P TP L L + L P PS P L +L
Sbjct: 295 ALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTL 354
Query: 293 ----ANVSSCLEGSMGLRSLWGSLLASLTPP--PLPPPDPPAPPTLLHNCHLCQKLQRDS 346
A S S+G +L + +PP PL P P APP L S
Sbjct: 355 PSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPAS 414
Query: 347 PTCHACLHPNRTVPTALSSPWYHTYGLAPPWPWSPVPLSLP 387
P P+ P AL+ PP P P S P
Sbjct: 415 PPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPP 455
Score = 33.9 bits (76), Expect = 0.27
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
Query: 317 TPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTALSSPWYH-TYGLAP 375
TP PL PP P APP+L Q L T P T+L SP T+ P
Sbjct: 336 TPLPLAPPSPSAPPSL-------QTLPSPPAT------PPSQATTSLGSPTLQATHSFLP 382
Query: 376 PWPWSPVPLSLPQPQ 390
P S PL+ P PQ
Sbjct: 383 SPPLS--PLATPPPQ 395
Score = 29.6 bits (65), Expect = 5.2
Identities = 40/122 (32%), Positives = 44/122 (36%), Gaps = 7/122 (5%)
Query: 263 PTPGPPDLGLTSRCLLEPCIPSVPQCL--PSLANVSSCLEGSMGLRSLWGSLLASLTPPP 320
P PP L L +P P P L P L + S G S ASL P
Sbjct: 498 PPQAPPPLAAPPLQLAKPP-PQAPPALATPPLQALPSPPASFPGQAPFSPS--ASLPMSP 554
Query: 321 LPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVP-TALSSPWYHTYGLAPPWPW 379
L P P APP L SPT A P P T++S P T LAP P
Sbjct: 555 LATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRL-TLALAPGPPP 613
Query: 380 SP 381
P
Sbjct: 614 PP 615
Score = 28.9 bits (63), Expect = 8.8
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 28/136 (20%)
Query: 259 LSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLRSLWGSLLASLTP 318
L+ P PP L L L P P L LA S ++ + L A +P
Sbjct: 389 LATPPPQAPPALALPP--LQAPPSPPASPPLSPLATPSPQAPNALAVHLLQ----APFSP 442
Query: 319 PPLPPPDPP-APPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTALSSPWYHTYGLAPPW 377
PP PP P +PP SP P P +L++P PP
Sbjct: 443 PPSPPVQAPFSPPA--------------SPPVSPSATPPSQAPPSLAAPPLQ----VPPS 484
Query: 378 PWSPVPLS---LPQPQ 390
P + P+S P PQ
Sbjct: 485 PPASPPMSPSATPPPQ 500
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 34.3 bits (77), Expect = 0.21
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 240 VSSVALAVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCL 299
V+S L++ S V S+G P +G S L P P +P + V +
Sbjct: 497 VASGTLSMGSEVVAGNSVG---------PTMGAASSGPLPPPPPPLPPSSDTPETVQN-- 545
Query: 300 EGSMGLRSLWGSLLASLTPPPLPPPDPPAPP 330
G + + PPP PPP PP PP
Sbjct: 546 ----------GPVTPPMPPPPPPPPPPPPPP 566
Score = 30.8 bits (68), Expect = 2.3
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 318 PPPLPPPDPPAPPTL 332
PPP PPP PP PP L
Sbjct: 560 PPPPPPPPPPPPPPL 574
Score = 29.6 bits (65), Expect = 5.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 318 PPPLPPPDPPAPP 330
PPP PPP PP PP
Sbjct: 555 PPPPPPPPPPPPP 567
Score = 29.6 bits (65), Expect = 5.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 318 PPPLPPPDPPAPP 330
PPP PPP PP PP
Sbjct: 556 PPPPPPPPPPPPP 568
Score = 29.6 bits (65), Expect = 5.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 318 PPPLPPPDPPAPP 330
PPP PPP PP PP
Sbjct: 559 PPPPPPPPPPPPP 571
Score = 29.3 bits (64), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 289 LPSLANVSSCLEGSMGLRSLWGSLLASLTPPPLPPPDPPAPPT 331
LP +A+ + + + + G + + + PLPPP PP PP+
Sbjct: 494 LPVVASGTLSMGSEVVAGNSVGPTMGAASSGPLPPPPPPLPPS 536
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 34.3 bits (77), Expect = 0.21
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 292 LANVSSCLEGSMGLRSLWGSLLASLTPPPLPPPDPPAPP 330
LA +S L + L L G+ + SL PPPLPPP PP PP
Sbjct: 284 LAKLSEALSALLPL--LPGTPVDSL-PPPLPPPPPPPPP 319
Score = 31.2 bits (69), Expect = 1.8
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 313 LASLTPPPLPPPDPP-APPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTALSSPWYHTY 371
LA + P P PP PP PPTL + L+ T +A T+ L+
Sbjct: 233 LAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALS 292
Query: 372 GLAPPWPWSPVPLSLPQP 389
L P P +PV SLP P
Sbjct: 293 ALLPLLPGTPVD-SLPPP 309
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 34.3 bits (77), Expect = 0.21
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 263 PTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLRSLWGSLLASLTPPPLP 322
P P PP + + P +P P A+ SS S LL + PPP P
Sbjct: 345 PPPPPPVIPSAQTAFVSPL--QMPMQPPFPASASSTHAAPPHPPST--GLLVTAPPPPGP 400
Query: 323 PPDPPAPP 330
PP PP PP
Sbjct: 401 PPPPPGPP 408
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 34.3 bits (77), Expect = 0.21
Identities = 47/166 (28%), Positives = 68/166 (40%), Gaps = 23/166 (13%)
Query: 246 AVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGL 305
AV S A HQ ++ P P TS L P P+ P P VS +
Sbjct: 2776 AVPSAA--HQEAPVTSRPARARPPDSPTS--LAPPLAPAAPT--PPSVTVSPSSPPTPPS 2829
Query: 306 RSLWGSLLASLTPPPLPPPDP--------PAPPTLLHNCHLCQKLQR----DSPTCHACL 353
++L S L ++ PPP PP PA PTL + H+ + D+ T
Sbjct: 2830 QAL--SSLKAVGPPPQTPPRRHRGLQAARPAEPTL-PSTHVTPSEPKPFVLDTGTPIPAS 2886
Query: 354 HPNRTVPTALSSPWY--HTYGLAPPWPWSPVPLSLPQPQQCSLFSV 397
P P + S+P Y ++ APP P P P P+P + ++ S+
Sbjct: 2887 TPQGVKPVSSSTPVYVVTSFVSAPPAPEPPAPEPPPEPTKVTVQSL 2932
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 33.9 bits (76), Expect = 0.27
Identities = 49/211 (23%), Positives = 74/211 (35%), Gaps = 39/211 (18%)
Query: 188 LESCVAEQQGRWRGWYTYT-DLCVLLEQPTWQLALGSLCQRLVKLSCLLAVAYVSSVALA 246
+E+ E + RWRG D+C+ + ++C + + + L S +
Sbjct: 543 IENLKHELEHRWRGGCEERKDVCISTDDDCPPKTFRNVCVQTDRETFLKPC---ESESKT 599
Query: 247 VASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEP----------CIPSVPQCLPSLANVS 296
S ++ + L +S + PP+ L+P +P P +P +
Sbjct: 600 TRSNQLVPKKLNISSLSQLSPPNDHKDIHAALQPMEGMASNQQKALPPPPASIPPPPPLP 659
Query: 297 SCLEGSMGLRSLWGSLLASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPN 356
S L GS+ + A PPLPPP PP PP P A P
Sbjct: 660 SGL-GSLSPAPPMPPVSAG---PPLPPPPPPPPPL--------------PPPSSAGPPPP 701
Query: 357 RTVPTALSSPWYHTYGLAPPWPWSPVPLSLP 387
P +SP APP P P P P
Sbjct: 702 PPPPPLPNSP-------APPNPGGPPPAPPP 725
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 33.9 bits (76), Expect = 0.27
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 14/67 (20%)
Query: 263 PTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLRSLWGSLLASLTPPPLP 322
P P PP P PS P LP S E + W SL L PPP
Sbjct: 579 PVPSPPRA---------PTPPSTPVPLPEKRR-SILREPTFR----WTSLTRELPPPPPA 624
Query: 323 PPDPPAP 329
PP PPAP
Sbjct: 625 PPPPPAP 631
Score = 33.1 bits (74), Expect = 0.47
Identities = 25/76 (32%), Positives = 27/76 (35%), Gaps = 28/76 (36%)
Query: 314 ASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVPTALSSPWYHTYGL 373
A L PPPL PP P PP L P+ + P L P
Sbjct: 399 AKLPPPPLTPPAPSPPPPL--------------------PPPSTSPPPPLCPP------- 431
Query: 374 APPWPWSPVPLSLPQP 389
PP P SP PL P P
Sbjct: 432 -PPPPVSPPPLPSPPP 446
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 263 PTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLEGSMGLRSLWGSLLASLTPPPLP 322
P P PP TS P + PQ PS A++ ++ S+L TPPPL
Sbjct: 629 PAPSPPPAPATSS--RRPLLLRAPQFTPSEAHLK-----------IYESVL---TPPPLG 672
Query: 323 PPDPPAP 329
P+ P P
Sbjct: 673 APEAPEP 679
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,648,880
Number of Sequences: 37866
Number of extensions: 1084346
Number of successful extensions: 11310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 185
Number of HSP's that attempted gapping in prelim test: 8149
Number of HSP's gapped (non-prelim): 2251
length of query: 410
length of database: 18,247,518
effective HSP length: 105
effective length of query: 305
effective length of database: 14,271,588
effective search space: 4352834340
effective search space used: 4352834340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.