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Search of human proteins with 187282992
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187282992 hypothetical protein LOC392145 [Homo sapiens]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187282992 hypothetical protein LOC392145 [Homo sapiens] 350 5e-97
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa... 164 3e-41
gi|9506689 exosome component 4 [Homo sapiens] 58 5e-09
gi|47174864 exosome component Rrp46 [Homo sapiens] 41 6e-04
gi|61743918 cytochrome P450, family 11, subfamily B, polypeptide... 30 0.81
gi|71067343 cytochrome P450, family 11, subfamily B, polypeptide... 30 0.81
gi|91208420 bassoon protein [Homo sapiens] 30 0.81
gi|239753874 PREDICTED: similar to hCG2036814 [Homo sapiens] 30 1.1
gi|239748437 PREDICTED: similar to hCG2036814 [Homo sapiens] 30 1.1
gi|239742371 PREDICTED: hypothetical protein XP_002342504 [Homo ... 30 1.1
gi|217272885 sphingosine kinase 1 isoform 3 [Homo sapiens] 29 1.8
gi|217272883 sphingosine kinase 1 isoform 3 [Homo sapiens] 29 1.8
gi|21361088 sphingosine kinase 1 isoform 1 [Homo sapiens] 29 1.8
gi|217272880 sphingosine kinase 1 isoform 2 [Homo sapiens] 29 1.8
gi|115527097 CDC42-binding protein kinase beta [Homo sapiens] 29 1.8
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho... 29 1.8
gi|31317268 WD repeat and FYVE domain containing 3 isoform 2 [Ho... 29 1.8
gi|119829183 cytochrome P450, family 11, subfamily B, polypeptid... 28 3.1
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 28 5.2
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 28 5.2
gi|116517330 factor in the germline alpha [Homo sapiens] 28 5.2
gi|158534077 regulator of G-protein signaling 22 [Homo sapiens] 28 5.2
gi|56090582 immunity-related GTPase family, Q [Homo sapiens] 28 5.2
gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo sap... 28 5.2
gi|163659920 pannexin 2 isoform 1 [Homo sapiens] 27 6.8
gi|237757297 pannexin 2 isoform 2 [Homo sapiens] 27 6.8
gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens] 27 8.9
gi|23308585 G protein-coupled receptor 156 [Homo sapiens] 27 8.9
gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G (3... 27 8.9
>gi|187282992 hypothetical protein LOC392145 [Homo sapiens]
Length = 174
Score = 350 bits (897), Expect = 5e-97
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MRQSDSETRGLLHWPSLDTVTNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTGGGE 60
MRQSDSETRGLLHWPSLDTVTNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTGGGE
Sbjct: 1 MRQSDSETRGLLHWPSLDTVTNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTGGGE 60
Query: 61 EPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMND 120
EPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMND
Sbjct: 61 EPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMND 120
Query: 121 LVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQVARLLAAGRAA 174
LVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQVARLLAAGRAA
Sbjct: 121 LVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQVARLLAAGRAA 174
>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
sapiens]
Length = 272
Score = 164 bits (416), Expect = 3e-41
Identities = 93/154 (60%), Positives = 102/154 (66%), Gaps = 11/154 (7%)
Query: 27 GQGPVETNRLSSMPPTLKRGLLCDFRHAP---------TGGGEEPEPAMVLQEALEPAMC 77
G GP P L+ LLCDFR AP GG EE E A+ LQEALEPA+
Sbjct: 78 GGGPAGAG--GEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVR 135
Query: 78 LDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMNDLVVSCGLGLAPGSVPTW 137
L RYP QLE S LLLEDGGSALA L A LALA AG+EM DLVV CGL LAPG PTW
Sbjct: 136 LGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGPAPTW 195
Query: 138 LLDPMRLEEEHTAPGVTLALLPMLNQVARLLAAG 171
LLDP RLEEE A G+T+AL+P+LNQVA LL +G
Sbjct: 196 LLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG 229
>gi|9506689 exosome component 4 [Homo sapiens]
Length = 245
Score = 57.8 bits (138), Expect = 5e-09
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 52 RHAPTGGGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLAL 111
+ P G + E + L++ E A+ +P Q++ +L+ G A +N A LA+
Sbjct: 87 KRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAV 146
Query: 112 AYAGMEMNDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQVARL 167
AG+ M D V +C G G T L D +EE P + LALLP Q+A L
Sbjct: 147 LDAGIPMRDFVCACSAGFVDG---TALADLSHVEEAAGGPQLALALLPASGQIALL 199
>gi|47174864 exosome component Rrp46 [Homo sapiens]
Length = 235
Score = 40.8 bits (94), Expect = 6e-04
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 58 GGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGME 117
G E +++ E + +P + ++ D GS LA LN A +AL AG+
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 118 MNDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLAL 157
M L CG+ A S T +LDP +E+ +T AL
Sbjct: 148 MRALF--CGVACALDSDGTLVLDPTSKQEKEARAVLTFAL 185
>gi|61743918 cytochrome P450, family 11, subfamily B, polypeptide 1
isoform 1 precursor [Homo sapiens]
Length = 503
Score = 30.4 bits (67), Expect = 0.81
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 125 CGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQVAR 166
CG+ L G P W + +RL E +P LPM++ VAR
Sbjct: 127 CGVFLLNG--PEWRFNRLRLNPEVLSPNAVQRFLPMVDAVAR 166
>gi|71067343 cytochrome P450, family 11, subfamily B, polypeptide 1
isoform 2 precursor [Homo sapiens]
Length = 437
Score = 30.4 bits (67), Expect = 0.81
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 125 CGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQVAR 166
CG+ L G P W + +RL E +P LPM++ VAR
Sbjct: 127 CGVFLLNG--PEWRFNRLRLNPEVLSPNAVQRFLPMVDAVAR 166
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.4 bits (67), Expect = 0.81
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 42 TLKRGLLCDFRHAPTGGGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALA 101
T RGL +H GG P P + A P R PH E LL +GGSA A
Sbjct: 864 TSGRGLA---KHGTQKGGPRPRPEPSQEPAALPKR---RLPHNATTGYEELLPEGGSAEA 917
Query: 102 TE 103
T+
Sbjct: 918 TD 919
>gi|239753874 PREDICTED: similar to hCG2036814 [Homo sapiens]
Length = 547
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 32 ETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPAMVLQEA--LEPAMCLD--RYPHVQLE 87
ET +SS+ P K+ ++ + R EEP +++ EA LE C D R VQ+
Sbjct: 174 ETKDISSLEPCCKKWVV-EIRE------EEPNSSLMKVEAVTLENNTCKDTERNDLVQMS 226
Query: 88 ASELLLEDGGSALATELNTAK 108
S+LLL + G+ T N K
Sbjct: 227 VSQLLLFENGNFQGTSQNFRK 247
>gi|239748437 PREDICTED: similar to hCG2036814 [Homo sapiens]
Length = 547
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 32 ETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPAMVLQEA--LEPAMCLD--RYPHVQLE 87
ET +SS+ P K+ ++ + R EEP +++ EA LE C D R VQ+
Sbjct: 174 ETKDISSLEPCCKKWVV-EIRE------EEPNSSLMKVEAVTLENNTCKDTERNDLVQMS 226
Query: 88 ASELLLEDGGSALATELNTAK 108
S+LLL + G+ T N K
Sbjct: 227 VSQLLLFENGNFQGTSQNFRK 247
>gi|239742371 PREDICTED: hypothetical protein XP_002342504 [Homo
sapiens]
Length = 547
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 32 ETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPAMVLQEA--LEPAMCLD--RYPHVQLE 87
ET +SS+ P K+ ++ + R EEP +++ EA LE C D R VQ+
Sbjct: 174 ETKDISSLEPCCKKWVV-EIRE------EEPNSSLMKVEAVTLENNTCKDTERNDLVQMS 226
Query: 88 ASELLLEDGGSALATELNTAK 108
S+LLL + G+ T N K
Sbjct: 227 VSQLLLFENGNFQGTSQNFRK 247
>gi|217272885 sphingosine kinase 1 isoform 3 [Homo sapiens]
Length = 384
Score = 29.3 bits (64), Expect = 1.8
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 97 GSALATELNTAKLALAYAGMEM---NDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGV 153
G+ALA LN YAG E DL+ +C L L LL PM L HTA G+
Sbjct: 113 GNALAASLNH------YAGYEQVTNEDLLTNCTLLLCRR-----LLSPMNLLSLHTASGL 161
Query: 154 TL 155
L
Sbjct: 162 RL 163
>gi|217272883 sphingosine kinase 1 isoform 3 [Homo sapiens]
Length = 384
Score = 29.3 bits (64), Expect = 1.8
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 97 GSALATELNTAKLALAYAGMEM---NDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGV 153
G+ALA LN YAG E DL+ +C L L LL PM L HTA G+
Sbjct: 113 GNALAASLNH------YAGYEQVTNEDLLTNCTLLLCRR-----LLSPMNLLSLHTASGL 161
Query: 154 TL 155
L
Sbjct: 162 RL 163
>gi|21361088 sphingosine kinase 1 isoform 1 [Homo sapiens]
Length = 398
Score = 29.3 bits (64), Expect = 1.8
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 97 GSALATELNTAKLALAYAGMEM---NDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGV 153
G+ALA LN YAG E DL+ +C L L LL PM L HTA G+
Sbjct: 127 GNALAASLNH------YAGYEQVTNEDLLTNCTLLLCRR-----LLSPMNLLSLHTASGL 175
Query: 154 TL 155
L
Sbjct: 176 RL 177
>gi|217272880 sphingosine kinase 1 isoform 2 [Homo sapiens]
Length = 470
Score = 29.3 bits (64), Expect = 1.8
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 97 GSALATELNTAKLALAYAGMEM---NDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGV 153
G+ALA LN YAG E DL+ +C L L LL PM L HTA G+
Sbjct: 199 GNALAASLNH------YAGYEQVTNEDLLTNCTLLLCRR-----LLSPMNLLSLHTASGL 247
Query: 154 TL 155
L
Sbjct: 248 RL 249
>gi|115527097 CDC42-binding protein kinase beta [Homo sapiens]
Length = 1711
Score = 29.3 bits (64), Expect = 1.8
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 17 LDTVTNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPAMVLQEALEPAM 76
L V E GP TN L+ PP+ + + P+ GG EP + L+ +P
Sbjct: 1609 LSAVPPSQEERPGPAPTN-LARQPPSRNKPYIS----WPSSGGSEPSVTVPLRSMSDPDQ 1663
Query: 77 CLDRYP 82
D+ P
Sbjct: 1664 DFDKEP 1669
>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 3526
Score = 29.3 bits (64), Expect = 1.8
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 MRQSDSETRGLLHWPSLDTVTNRSSEGQGPVETNRLSSMPPTLKR--GLLCDFRHAP--T 56
+ QS+ +RG W L T+ +S GQ V+ S+P TL + L D H P
Sbjct: 114 INQSEEASRG---WMLLTTINLLASSGQKTVDCMTTMSVPSTLVKCLYLFFDLPHVPEAV 170
Query: 57 GGGEEPEP 64
GG + P
Sbjct: 171 GGAQNELP 178
>gi|31317268 WD repeat and FYVE domain containing 3 isoform 2 [Homo
sapiens]
Length = 795
Score = 29.3 bits (64), Expect = 1.8
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 MRQSDSETRGLLHWPSLDTVTNRSSEGQGPVETNRLSSMPPTLKR--GLLCDFRHAP--T 56
+ QS+ +RG W L T+ +S GQ V+ S+P TL + L D H P
Sbjct: 114 INQSEEASRG---WMLLTTINLLASSGQKTVDCMTTMSVPSTLVKCLYLFFDLPHVPEAV 170
Query: 57 GGGEEPEP 64
GG + P
Sbjct: 171 GGAQNELP 178
>gi|119829183 cytochrome P450, family 11, subfamily B, polypeptide 2
precursor [Homo sapiens]
Length = 503
Score = 28.5 bits (62), Expect = 3.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 125 CGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLALLPMLNQVAR 166
CG+ L G P W + +RL + +P LPM++ VAR
Sbjct: 127 CGVFLLNG--PEWRFNRLRLNPDVLSPKAVQRFLPMVDAVAR 166
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 27.7 bits (60), Expect = 5.2
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 55 PTGGGE---EPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTA 107
P G E P PA LQ+A EPA+ L+ P LE +D + EL A
Sbjct: 299 PAPGSELEVAPAPAPELQQAPEPAVGLESAPAPALELEPAPEQDPAPSQTLELEPA 354
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 27.7 bits (60), Expect = 5.2
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 55 PTGGGE---EPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTA 107
P G E P PA LQ+A EPA+ L+ P LE +D + EL A
Sbjct: 244 PAPGSELEVAPAPAPELQQAPEPAVGLESAPAPALELEPAPEQDPAPSQTLELEPA 299
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 5.2
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 15 PSLDTVTNRSSEGQGPVETNRLSSMPPTLKRGLLCDF-----RHAPTGGGEEPEPA---- 65
P + +N SSE T+ + + + + C F P G EPA
Sbjct: 132 PDEQSYSNNSSESH----TSSARQLSRNITQHISCAFGLKNEEEGPWADGGSGEPAHACR 187
Query: 66 ---MVLQEALEPAMCLDRYPHVQLEASEL 91
M E + P LDR+P V+L + L
Sbjct: 188 HSVMSTTEIISPTRSLDRFPEVELLSHRL 216
>gi|158534077 regulator of G-protein signaling 22 [Homo sapiens]
Length = 1264
Score = 27.7 bits (60), Expect = 5.2
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 61 EPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTA-----KLALAYAG 115
+P P M L P C+ + P +Q E L + E+ TA K L Y G
Sbjct: 539 DPFPQMATLLPLRPKSCIPQIPEIQKEEFSLSQPPKSPNKSPEVKTATQKPWKRELLYPG 598
Query: 116 MEMNDLV 122
+D++
Sbjct: 599 SSKDDVI 605
>gi|56090582 immunity-related GTPase family, Q [Homo sapiens]
Length = 623
Score = 27.7 bits (60), Expect = 5.2
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 85 QLEASELLLEDGGSALATE--------LNTAKLALAYAGMEMNDLVVSCGLGL------- 129
+LEA E GG A L +A+L LA AG LVV LGL
Sbjct: 193 ELEAVREAFETGGLEAALSWVRSGLERLGSARLDLAVAGKADVGLVVDMLLGLDPGDPGA 252
Query: 130 APGSVPT 136
AP SVPT
Sbjct: 253 APASVPT 259
>gi|4502067 alpha-1-microglobulin/bikunin preproprotein [Homo
sapiens]
Length = 352
Score = 27.7 bits (60), Expect = 5.2
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 19/67 (28%)
Query: 20 VTNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTG-------------------GGE 60
+T + S GP T +L P L+ LL DFR G G +
Sbjct: 134 LTKKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPEDSIFTMADRGECVPGEQ 193
Query: 61 EPEPAMV 67
EPEP ++
Sbjct: 194 EPEPILI 200
>gi|163659920 pannexin 2 isoform 1 [Homo sapiens]
Length = 677
Score = 27.3 bits (59), Expect = 6.8
Identities = 35/117 (29%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 20 VTNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPAMVLQEALEPAMCLD 79
V N +E P R + TL LL H GGG +P P A PA
Sbjct: 452 VENSKAEKPKPA---RRKTATDTLIAPLLDRSAHHYKGGGGDPGPGPAPAPAPPPAPDKK 508
Query: 80 RYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMNDL--VVSCGLGLAPGSV 134
H L+ +L G E A L A E L CGLGLAP +
Sbjct: 509 HARHFSLDVHPYIL--GTKKAKAEAVPAALP-ASRSQEGGFLSQAEDCGLGLAPAPI 562
>gi|237757297 pannexin 2 isoform 2 [Homo sapiens]
Length = 643
Score = 27.3 bits (59), Expect = 6.8
Identities = 35/117 (29%), Positives = 41/117 (35%), Gaps = 8/117 (6%)
Query: 20 VTNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPAMVLQEALEPAMCLD 79
V N +E P R + TL LL H GGG +P P A PA
Sbjct: 452 VENSKAEKPKPA---RRKTATDTLIAPLLDRSAHHYKGGGGDPGPGPAPAPAPPPAPDKK 508
Query: 80 RYPHVQLEASELLLEDGGSALATELNTAKLALAYAGMEMNDL--VVSCGLGLAPGSV 134
H L+ +L G E A L A E L CGLGLAP +
Sbjct: 509 HARHFSLDVHPYIL--GTKKAKAEAVPAALP-ASRSQEGGFLSQAEDCGLGLAPAPI 562
>gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens]
Length = 1021
Score = 26.9 bits (58), Expect = 8.9
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 21 TNRSSEGQGPVETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPAMVLQEALEPAMCLDR 80
T+ G +TN L +P TL + + T G EE EP + EA +
Sbjct: 126 TDEKYYGSYSAKTN-LIVIPDTLSATM-----SSQTLGKEEGEPLALTCEASKATA---- 175
Query: 81 YPHVQLEASELLLEDGGSALATEL 104
H L + L +DGG + ATE+
Sbjct: 176 -QHTHLSVTWYLTQDGGGSQATEI 198
>gi|23308585 G protein-coupled receptor 156 [Homo sapiens]
Length = 814
Score = 26.9 bits (58), Expect = 8.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 29 GPVETNRLSSMPPTLKRGLLCDFRHAPTGGGEEPEPA 65
G +E ++ S P RG F P+G G P PA
Sbjct: 673 GTLEGSKQSQTEPEGARGSKAAFLRQPSGSGRAPSPA 709
>gi|14150064 polymerase (RNA) III (DNA directed) polypeptide G
(32kD) like [Homo sapiens]
Length = 218
Score = 26.9 bits (58), Expect = 8.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 40 PPTLKRGLL---CDFRHAPTGGGEEPEPAMVLQEALEPAM 76
PPTL+ L +FR P GEE E + L++ L AM
Sbjct: 32 PPTLQPSPLFPPLEFRPVPLPSGEEGEYVLALKQELRGAM 71
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,264,011
Number of Sequences: 37866
Number of extensions: 338794
Number of successful extensions: 652
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 30
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.