Guide to the Human Genome
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Name: LOC100130644 Sequence: fasta or formatted (547aa) NCBI GI: 239748437
Description:

PREDICTED: similar to hCG2036814

Not currently referenced in the text

Other entries for this name:
alt mRNA {547aa} PREDICTED: similar to hCG2036814
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         24           2
 C cysteine            2.6         14           2
 D aspartate           3.3         18           1
 E glutamate           7.1         39           3
 F phenylalanine       4.4         24           1
 G glycine             6.0         33           2
 H histidine           2.9         16           2
 I isoleucine          3.5         19           2
 K lysine              8.6         47           3
 L leucine            11.5         63           3
 M methionine          2.7         15           1
 N asparagine          4.6         25           2
 P proline             3.3         18           2
 Q glutamine           6.6         36           2
 R arginine            4.8         26           2
 S serine              8.8         48           2
 T threonine           5.9         32           2
 V valine              6.0         33           2
 W tryptophan          1.1          6           1
 Y tyrosine            2.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2036814 
LOC100130644          1.000   PREDICTED: similar to hCG2036814 
LOC100288276          1.000   PREDICTED: hypothetical protein XP_002342504 
GIMAP4                0.020   GTPase, IMAP family member 4 
GIMAP1                0.015   GTPase, IMAP family member 1 
GIMAP8                0.011   GTPase, IMAP family member 8 
TTC3                  0.010   tetratricopeptide repeat domain 3 
TTC3                  0.010   tetratricopeptide repeat domain 3 
GIMAP5                0.010   GTPase, IMAP family member 5 
GIMAP6                0.009   GTPase, IMAP family member 6 
GIMAP7                0.007   GTPase, IMAP family member 7 
RIF1                  0.007   RAP1 interacting factor 1 
GIMAP2                0.007   GTPase, IMAP family member 2 
C3orf1                0.005   hypothetical protein LOC51300 
CAGE1                 0.005   cancer antigen 1 
ATPBD4                0.005   ATP binding domain 4 isoform 1 
LOC392145             0.005   hypothetical protein LOC392145 
ERAL1                 0.005   Era-like 1 
MYH3                  0.005   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CENPF                 0.005   centromere protein F 
PLD1                  0.004   phospholipase D1 isoform b 
PLD1                  0.004   phospholipase D1 isoform a 
TGFB2                 0.004   transforming growth factor, beta 2 isoform 1 
TGFB2                 0.004   transforming growth factor, beta 2 isoform 2 
CHIT1                 0.004   chitotriosidase 
C14orf39              0.004   hypothetical protein LOC317761 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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