Guide to the Human Genome
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Name: FIGLA Sequence: fasta or formatted (219aa) NCBI GI: 116517330
Description:

factor in the germline alpha

Referenced in:

Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         18           2
 C cysteine            1.4          3           1
 D aspartate           4.6         10           1
 E glutamate           8.2         18           3
 F phenylalanine       2.3          5           1
 G glycine             5.9         13           2
 H histidine           2.3          5           1
 I isoleucine          3.2          7           2
 K lysine              5.0         11           2
 L leucine            11.9         26           2
 M methionine          0.9          2           1
 N asparagine          3.7          8           2
 P proline             8.2         18           2
 Q glutamine           5.0         11           1
 R arginine            8.2         18           3
 S serine             10.0         22           2
 T threonine           3.7          8           2
 V valine              5.5         12           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   factor in the germline alpha 
HAND2                 0.071   basic helix-loop-helix transcription factor HAND2 [H...
ASCL1                 0.068   achaete-scute complex homolog 1 
NEUROD2               0.068   neurogenic differentiation 2 
TCF15                 0.068   basic helix-loop-helix transcription factor 15 [Homo...
ASCL4                 0.066   achaete-scute complex-like 4 
HAND1                 0.066   basic helix-loop-helix transcription factor HAND1 [Ho...
MSC                   0.066   musculin 
TAL1                  0.066   T-cell acute lymphocytic leukemia 1 
ATOH1                 0.066   atonal homolog 1 
TCF21                 0.066   transcription factor 21 
TCF21                 0.066   transcription factor 21 
TWIST1                0.063   twist 
TWIST2                0.061   twist homolog 2 
ATOH7                 0.061   atonal homolog 7 
SCXB                  0.058   scleraxis homolog B 
PTF1A                 0.058   pancreas specific transcription factor, 1a 
SCXA                  0.058   scleraxis homolog A 
ASCL5                 0.058   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.058   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.058   PREDICTED: achaete-scute complex homolog 5 
MYF5                  0.056   myogenic factor 5 
MYOG                  0.056   myogenin 
NEUROD6               0.056   neurogenic differentiation 6 
MYF6                  0.054   myogenic factor 6 
NEUROD1               0.054   neurogenic differentiation 1 
NEUROG2               0.054   neurogenin 2 
ATOH8                 0.054   atonal homolog 8 
ASCL3                 0.054   ASCL3 
ASCL2                 0.054   achaete-scute complex homolog-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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