Guide to the Human Genome
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Name: AMBP Sequence: fasta or formatted (352aa) NCBI GI: 4502067
Description:

alpha-1-microglobulin/bikunin preproprotein

Referenced in:

Protease Inhibitors
Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         21           2
 C cysteine            4.5         16           1
 D aspartate           3.4         12           1
 E glutamate           8.0         28           3
 F phenylalanine       4.0         14           1
 G glycine            10.2         36           3
 H histidine           1.1          4           2
 I isoleucine          4.3         15           1
 K lysine              5.1         18           2
 L leucine             7.7         27           5
 M methionine          2.8         10           1
 N asparagine          4.0         14           2
 P proline             5.1         18           2
 Q glutamine           3.7         13           1
 R arginine            5.4         19           2
 S serine              5.7         20           1
 T threonine           7.1         25           1
 V valine              6.2         22           2
 W tryptophan          1.4          5           1
 Y tyrosine            4.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha-1-microglobulin/bikunin preproprotein 
WFIKKN2               0.104   WFIKKN2 protein 
SPINT2                0.093   serine protease inhibitor, Kunitz type, 2 
TFPI                  0.090   tissue factor pathway inhibitor isoform a precursor [...
WFIKKN1               0.084   WAP, follistatin/kazal, immunoglobulin, kunitz and n...
TFPI                  0.074   tissue factor pathway inhibitor isoform b precursor ...
PTGDS                 0.073   prostaglandin H2 D-isomerase 
SPINT1                0.066   serine peptidase inhibitor, Kunitz type 1 isoform 2 ...
SPINT1                0.066   serine peptidase inhibitor, Kunitz type 1 isoform 2 p...
TFPI2                 0.066   tissue factor pathway inhibitor 2 
C8G                   0.058   complement component 8, gamma polypeptide 
SPINT1                0.056   serine peptidase inhibitor, Kunitz type 1 isoform 1 ...
APLP2                 0.055   amyloid beta (A4) precursor-like protein 2 isoform ...
APLP2                 0.055   amyloid beta (A4) precursor-like protein 2 isoform 1 ...
APP                   0.051   amyloid beta A4 protein isoform b precursor 
APP                   0.051   amyloid beta A4 protein isoform a precursor 
APP                   0.051   amyloid beta A4 protein isoform f precursor 
LCN2                  0.051   lipocalin 2 
SPINT3                0.051   serine protease inhibitor, Kunitz type, 3 
SPINLW1               0.049   serine peptidase inhibitor-like, with Kunitz and WAP...
SPINLW1               0.049   serine peptidase inhibitor-like, with Kunitz and WAP...
COL6A3                0.048   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.048   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.048   alpha 3 type VI collagen isoform 4 precursor 
LCN1                  0.045   lipocalin 1 precursor 
WFDC8                 0.042   WAP four-disulfide core domain 8 precursor 
WFDC8                 0.042   WAP four-disulfide core domain 8 precursor 
PAPLN                 0.041   papilin 
LOC100129193          0.041   PREDICTED: similar to hCG1795014 
LOC100129193          0.041   PREDICTED: similar to hCG1795014 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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