Search of human proteins with 113411433

Search of human proteins with 113411433

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113411433 PREDICTED: hypothetical protein [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113411433 PREDICTED: hypothetical protein [Homo sapiens]           164   2e-41
gi|239747446 PREDICTED: similar to Neuroblastoma breakpoint fami...    61   2e-10
gi|239741304 PREDICTED: similar to Neuroblastoma breakpoint fami...    61   2e-10
gi|239741281 PREDICTED: Neuroblastoma breakpoint family member 6...    61   2e-10
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ...    61   2e-10
gi|239752894 PREDICTED: Neuroblastoma breakpoint family member 6...    60   5e-10
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform...    42   8e-05
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform...    42   8e-05
gi|114158664 hypothetical protein LOC343505 [Homo sapiens]             32   0.083
gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2...    31   0.19 
gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1...    31   0.19 
gi|221218991 neuroblastoma breakpoint family, member 4 [Homo sap...    31   0.19 
gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]          29   0.71 
gi|92110019 hypothetical protein LOC55672 [Homo sapiens]               29   0.71 
gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo ...    28   1.6  
gi|239741297 PREDICTED: neuroblastoma breakpoint family, member ...    28   1.6  
gi|169162915 PREDICTED: hypothetical protein LOC728841 [Homo sap...    28   1.6  
gi|14149997 neuroblastoma breakpoint family, member 3 [Homo sapi...    28   1.6  
gi|156071420 hypothetical protein LOC728912 [Homo sapiens]             28   1.6  
gi|119709825 neuroblastoma breakpoint family, member 11-like [Ho...    28   1.6  
gi|7657017 hypothetical protein LOC25832 [Homo sapiens]                28   1.6  
gi|83415174 hypothetical protein LOC400818 [Homo sapiens]              28   1.6  
gi|61966781 hypothetical protein LOC391356 [Homo sapiens]              28   1.6  
gi|42544159 heat shock 105kD [Homo sapiens]                            27   3.5  
gi|148612853 ATP-binding cassette, sub-family F (GCN20), member ...    27   3.5  
gi|14110378 neighbor of BRCA1 gene 1 [Homo sapiens]                    27   4.6  
gi|14110375 neighbor of BRCA1 gene 1 [Homo sapiens]                    27   4.6  
gi|14110381 neighbor of BRCA1 gene 1 [Homo sapiens]                    27   4.6  
gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]              27   4.6  
gi|29789405 hypothetical protein LOC284565 [Homo sapiens]              27   4.6  

>gi|113411433 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 81

 Score =  164 bits (414), Expect = 2e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTG 60
          MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTG
Sbjct: 1  MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTG 60

Query: 61 SGTPMSAYDDCESKLEKLGSV 81
          SGTPMSAYDDCESKLEKLGSV
Sbjct: 61 SGTPMSAYDDCESKLEKLGSV 81


>gi|239747446 PREDICTED: similar to Neuroblastoma breakpoint family
           member 6-like protein [Homo sapiens]
          Length = 298

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 4   GRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFST 59
           GR    L  QHVKNT+K+FE LL++ +  +Y  Q +CEQ+ +GSQL E L RK +T
Sbjct: 117 GRGVCYLFTQHVKNTVKSFEGLLRNTDIAYYQRQRFCEQMVQGSQLTEILVRKLAT 172


>gi|239741304 PREDICTED: similar to Neuroblastoma breakpoint family
           member 6-like protein [Homo sapiens]
          Length = 298

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 4   GRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFST 59
           GR    L  QHVKNT+K+FE LL++ +  +Y  Q +CEQ+ +GSQL E L RK +T
Sbjct: 117 GRGVCYLFTQHVKNTVKSFEGLLRNTDIAYYQRQRFCEQMVQGSQLTEILVRKLAT 172


>gi|239741281 PREDICTED: Neuroblastoma breakpoint family member
           6-like protein [Homo sapiens]
          Length = 322

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 28/56 (50%), Positives = 38/56 (67%)

Query: 4   GRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFST 59
           GR    L  QHVKNT+K+FE LL++ +  +Y  Q +CEQ+ +GSQL E L RK +T
Sbjct: 117 GRGVCYLFTQHVKNTVKSFEGLLRNTDIAYYQRQRFCEQMVQGSQLTEILVRKLAT 172


>gi|157311604 phosphodiesterase 4D interacting protein isoform 1 [Homo
            sapiens]
          Length = 2346

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 29/56 (51%), Positives = 41/56 (73%)

Query: 4    GRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFST 59
            GR    L+ +H K+T+K+FE+LL+SN+ D+Y+ Q + EQLA+GSQL E L  K ST
Sbjct: 1495 GRGICYLITRHAKDTVKSFEDLLRSNDIDYYLGQSFREQLAQGSQLTERLTSKLST 1550


>gi|239752894 PREDICTED: Neuroblastoma breakpoint family member
           6-like protein [Homo sapiens]
          Length = 298

 Score = 59.7 bits (143), Expect = 5e-10
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query: 4   GRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFST 59
           GR    L  QHVKNT+K+FE LL++    +Y  Q +CEQ+ +GSQL E L RK  T
Sbjct: 117 GRGVCYLFTQHVKNTVKSFEGLLRNTGIAYYQRQRFCEQMVQGSQLTEILVRKLVT 172


>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
            [Homo sapiens]
          Length = 1814

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 13   QHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTGS--GTPMSAYDD 70
            QH+   +K FEELLQ+++ D+ + + + EQL + ++L E L + F  G   G  M+  ++
Sbjct: 1272 QHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGKSVGVEMNTQNE 1331

Query: 71   CESKLEK 77
               ++E+
Sbjct: 1332 LMERIEE 1338


>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
            [Homo sapiens]
          Length = 1893

 Score = 42.4 bits (98), Expect = 8e-05
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 13   QHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTGS--GTPMSAYDD 70
            QH+   +K FEELLQ+++ D+ + + + EQL + ++L E L + F  G   G  M+  ++
Sbjct: 1272 QHMNTMIKAFEELLQASDVDYCVAEGFQEQLNQCAELLEKLEKLFLNGKSVGVEMNTQNE 1331

Query: 71   CESKLEK 77
               ++E+
Sbjct: 1332 LMERIEE 1338


>gi|114158664 hypothetical protein LOC343505 [Homo sapiens]
          Length = 421

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTG 60
           ++ GR AS  L QH+       + LL  +  D+   Q + EQLA+G +LA  L  K S  
Sbjct: 133 LREGRDASHSLNQHL-------QALLTPDKHDNSQGQDFREQLAEGCRLARHLVHKLSPE 185

Query: 61  SGTPMSAYDDCESKLEKLGSV 81
           + T     +D   K ++L  V
Sbjct: 186 NDTD----EDENDKTKELDKV 202


>gi|221136848 neuroblastoma breakpoint family, member 6 isoform 2
           [Homo sapiens]
          Length = 638

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTG 60
           ++ GR AS  L +H+K        LL  ++ D    Q   EQLA+G +LAE L  K S  
Sbjct: 113 LREGRDASRWLNKHLKT-------LLTPDDPDKSQGQDLREQLAEGHRLAEHLVHKLSPE 165

Query: 61  SGTPMSA-YDDCESKLEKL 78
           +        DD + ++EK+
Sbjct: 166 NDEDEDEDEDDKDEEVEKV 184


>gi|221136844 neuroblastoma breakpoint family, member 6 isoform 1
           [Homo sapiens]
          Length = 667

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTG 60
           ++ GR AS  L +H+K        LL  ++ D    Q   EQLA+G +LAE L  K S  
Sbjct: 113 LREGRDASRWLNKHLKT-------LLTPDDPDKSQGQDLREQLAEGHRLAEHLVHKLSPE 165

Query: 61  SGTPMSA-YDDCESKLEKL 78
           +        DD + ++EK+
Sbjct: 166 NDEDEDEDEDDKDEEVEKV 184


>gi|221218991 neuroblastoma breakpoint family, member 4 [Homo
           sapiens]
          Length = 638

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTG 60
           ++ GR AS  L +H+K        LL  ++ D    Q   EQLA+G +LAE L  K S  
Sbjct: 113 LREGRDASRWLNKHLKT-------LLTPDDPDKSQGQDLREQLAEGHRLAEHLVHKLSPE 165

Query: 61  SGTPMSA-YDDCESKLEKL 78
           +        DD + ++EK+
Sbjct: 166 NDEDEDEDEDDKDEEVEKV 184


>gi|224589132 hypothetical protein LOC100132406 [Homo sapiens]
          Length = 3628

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H++  L  +E        D    Q   EQLA+G +LA+ L +K S
Sbjct: 384 LREGRDASRSLNEHLQALLTPYEP-------DKSQGQDLQEQLAEGCRLAQHLVQKLS 434



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 113 LREGRDASRSLYEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 163


>gi|92110019 hypothetical protein LOC55672 [Homo sapiens]
          Length = 1214

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L QH+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 113 LREGRDASRSLNQHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 163



 Score = 29.3 bits (64), Expect = 0.71
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L QH+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 384 LREGRDASRSLNQHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 434



 Score = 28.9 bits (63), Expect = 0.92
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L QH+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 655 LREGRDASRSLNQHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQQLFQKLS 705


>gi|239741309 PREDICTED: hypothetical protein XP_002344485 [Homo
           sapiens]
          Length = 4621

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 384 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 434



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 113 LREGRDASRSLNEHL-------QALLTLDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 163


>gi|239741297 PREDICTED: neuroblastoma breakpoint family, member 9
           [Homo sapiens]
          Length = 299

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 113 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 163


>gi|169162915 PREDICTED: hypothetical protein LOC728841 [Homo
           sapiens]
          Length = 3815

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 133 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 183


>gi|14149997 neuroblastoma breakpoint family, member 3 [Homo
           sapiens]
          Length = 633

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 4   GRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           GR AS  L QH+       + LL  +  D+   +   EQLA+G +LA+ L +K S
Sbjct: 172 GRDASRSLNQHL-------QALLTPDEPDNSQGRDLREQLAEGCRLAQHLVQKLS 219


>gi|156071420 hypothetical protein LOC728912 [Homo sapiens]
          Length = 790

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1  MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
          ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 38 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 88



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 309 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 359


>gi|119709825 neuroblastoma breakpoint family, member 11-like
          [Homo sapiens]
          Length = 790

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1  MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
          ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 38 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 88



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 309 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 359


>gi|7657017 hypothetical protein LOC25832 [Homo sapiens]
          Length = 921

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1  MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
          ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 44 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 94


>gi|83415174 hypothetical protein LOC400818 [Homo sapiens]
          Length = 942

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 113 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 163



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +LA+ L +K S
Sbjct: 384 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLS 434


>gi|61966781 hypothetical protein LOC391356 [Homo sapiens]
          Length = 140

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)

Query: 2   KLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLA 44
           +LGR+   +L    + TLK   E LQ  N DH +     E +A
Sbjct: 74  ELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIA 116


>gi|42544159 heat shock 105kD [Homo sapiens]
          Length = 858

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 22  FEELLQSNNFDHYMEQHYCEQLAKGSQL-AESLARKFSTGSGTPMSAYDDCESKLEKLGS 80
           F+  L   NFD  + +H+C +     +L A+S  R         +  Y +CE KL+KL S
Sbjct: 227 FDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRAL-------LRLYQECE-KLKKLMS 278


>gi|148612853 ATP-binding cassette, sub-family F (GCN20), member 3
           [Homo sapiens]
          Length = 709

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 14/66 (21%)

Query: 3   LGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFSTGSG 62
           LG +A    I+H    LK             Y  QH+ EQL       E LARKF    G
Sbjct: 539 LGDLAPVRGIRHAHRNLKI-----------GYFSQHHVEQLDLNVSAVELLARKF---PG 584

Query: 63  TPMSAY 68
            P   Y
Sbjct: 585 RPEEEY 590


>gi|14110378 neighbor of BRCA1 gene 1 [Homo sapiens]
          Length = 966

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 10  LLIQHVKNTLKTFEELLQSNNFDHYMEQH 38
           LL +H  N L+   ELLQ NN D Y +++
Sbjct: 938 LLKKHNYNILQVVTELLQLNNNDWYSQRY 966


>gi|14110375 neighbor of BRCA1 gene 1 [Homo sapiens]
          Length = 966

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 10  LLIQHVKNTLKTFEELLQSNNFDHYMEQH 38
           LL +H  N L+   ELLQ NN D Y +++
Sbjct: 938 LLKKHNYNILQVVTELLQLNNNDWYSQRY 966


>gi|14110381 neighbor of BRCA1 gene 1 [Homo sapiens]
          Length = 966

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 10  LLIQHVKNTLKTFEELLQSNNFDHYMEQH 38
           LL +H  N L+   ELLQ NN D Y +++
Sbjct: 938 LLKKHNYNILQVVTELLQLNNNDWYSQRY 966


>gi|194097477 neuronal PAS domain protein 4 [Homo sapiens]
          Length = 802

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 15  VKNTLKTFEELLQSNNFDHYMEQHYCE---QLAKGSQLAESLARKFSTGSGT----PMSA 67
           V   L T E      +F HY E+   E    + + SQLA+ + R FS  +GT    P+  
Sbjct: 605 VPEGLLTPEASPVKQSFFHYSEKEQNEIDRLIQQISQLAQGMDRPFSAEAGTGGLEPLGG 664

Query: 68  YDDCESKLEKLGS 80
            +  +S L   G+
Sbjct: 665 LEPLDSNLSLSGA 677


>gi|29789405 hypothetical protein LOC284565 [Homo sapiens]
          Length = 670

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 1   MKLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLAKGSQLAESLARKFS 58
           ++ GR AS  L +H+       + LL  +  D    Q   EQLA+G +L + L +K S
Sbjct: 113 LREGRDASRSLNEHL-------QALLTPDEPDKSQGQDLQEQLAEGCRLTQHLVQKLS 163


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,658,182
Number of Sequences: 37866
Number of extensions: 87544
Number of successful extensions: 268
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 41
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.