Guide to the Human Genome
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Name: C2orf79 Sequence: fasta or formatted (140aa) NCBI GI: 61966781
Description:

hypothetical protein LOC391356

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         19           2
 C cysteine            1.4          2           1
 D aspartate           2.9          4           1
 E glutamate           7.1         10           2
 F phenylalanine       2.9          4           1
 G glycine             4.3          6           1
 H histidine           5.0          7           1
 I isoleucine          2.1          3           1
 K lysine              6.4          9           2
 L leucine            12.1         17           1
 M methionine          2.9          4           1
 N asparagine          1.4          2           1
 P proline             6.4          9           1
 Q glutamine           6.4          9           2
 R arginine            6.4          9           1
 S serine              2.1          3           1
 T threonine           5.0          7           2
 V valine              7.1         10           2
 W tryptophan          1.4          2           1
 Y tyrosine            2.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC391356 
PTRH2                 0.027   Bcl-2 inhibitor of transcription 
USP35                 0.011   ubiquitin specific protease 35 
DMD                   0.011   dystrophin Dp427c isoform 
DMD                   0.011   dystrophin Dp260-2 isoform 
DMD                   0.011   dystrophin Dp260-1 isoform 
DMD                   0.011   dystrophin Dp427p2 isoform 
DMD                   0.011   dystrophin Dp427p1 isoform 
LOC729130             0.011   PREDICTED: hypothetical protein 
DMD                   0.011   dystrophin Dp427l isoform 
DMD                   0.011   dystrophin Dp427m isoform 
SNX13                 0.008   sorting nexin 13 
RNF169                0.008   ring finger protein 169 
FCGR2B                0.008   Fc fragment of IgG, low affinity IIb, receptor isofo...
FCGR2B                0.008   Fc fragment of IgG, low affinity IIb, receptor isofo...
TNXB                  0.008   tenascin XB isoform 2 
TNXB                  0.008   tenascin XB isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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