VTI1A 1068

Name: VTI1A	Sequence: fasta or formatted (217aa)		NCBI GI: 113374156
Description: SNARE Vti1a-beta protein		Referenced in: ER, Golgi, and the Secretory Pathway
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 12 1 C cysteine 0.0 0 0 D aspartate 5.1 11 2 E glutamate 12.0 26 2 F phenylalanine 1.8 4 1 G glycine 4.6 10 1 H histidine 1.4 3 1 I isoleucine 7.8 17 2 K lysine 4.6 10 2 L leucine 10.6 23 2 M methionine 4.1 9 1 N asparagine 4.1 9 1 P proline 2.3 5 2 Q glutamine 5.5 12 1 R arginine 11.5 25 2 S serine 7.4 16 2 T threonine 4.1 9 1 V valine 5.1 11 2 W tryptophan 0.0 0 0 Y tyrosine 2.3 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SNARE Vti1a-beta protein VTI1B 0.217 vesicle transport through interaction with t-SNAREs 1... GOLGA8E 0.041 golgi autoantigen, golgin subfamily a, 8E WDR87 0.038 NYD-SP11 protein KIF5B 0.038 kinesin family member 5B TCHH 0.038 trichohyalin LOC100133758 0.036 PREDICTED: hypothetical protein, partial CEP135 0.036 centrosome protein 4 LOC400352 0.036 PREDICTED: similar to Putative golgin subfamily A m... LOC100132816 0.036 PREDICTED: similar to Putative golgin subfamily A m... AKAP9 0.036 A-kinase anchor protein 9 isoform 2 AKAP9 0.036 A-kinase anchor protein 9 isoform 3 GOLGA8B 0.033 golgi autoantigen, golgin subfamily a, 8B GOLGA8A 0.033 golgi autoantigen, golgin subfamily a, 8A LOC283685 0.033 PREDICTED: golgi autoantigen, golgin subfamily a-li... TNIK 0.033 TRAF2 and NCK interacting kinase isoform 6 TNIK 0.033 TRAF2 and NCK interacting kinase isoform 5 TNIK 0.033 TRAF2 and NCK interacting kinase isoform 2 TNIK 0.033 TRAF2 and NCK interacting kinase isoform 1 LOC647042 0.031 PREDICTED: hypothetical protein isoform 1 MYH10 0.031 myosin, heavy polypeptide 10, non-muscle GOLGA8G 0.031 golgi autoantigen, golgin subfamily a, 8G LOC283685 0.031 PREDICTED: golgi autoantigen, golgin subfamily a-li... MYH9 0.028 myosin, heavy polypeptide 9, non-muscle LOC653061 0.028 PREDICTED: similar to Golgin subfamily A member 8-l... LOC653061 0.028 PREDICTED: similar to Golgin subfamily A member 8-l... LOC653061 0.028 PREDICTED: similar to Golgin subfamily A member 8-l... LOC653061 0.028 PREDICTED: similar to Golgin subfamily A member 8-l... SMC2 0.028 structural maintenance of chromosomes 2 SMC2 0.028 structural maintenance of chromosomes 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.