Search of human proteins with 113204604

Search of human proteins with 113204604

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
         (343 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                733   0.0  
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                 206   3e-53
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]     204   9e-53
gi|24497589 aristaless related homeobox [Homo sapiens]                122   6e-28
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...   121   8e-28
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                      112   5e-25
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                      112   5e-25
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                    112   5e-25
gi|122937484 dorsal root ganglia homeobox [Homo sapiens]              109   3e-24
gi|12707580 paired-like homeobox 2b [Homo sapiens]                    108   9e-24
gi|34365783 visual system homeobox 2 [Homo sapiens]                   107   2e-23
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]         107   2e-23
gi|7706659 paired related homeobox 2 [Homo sapiens]                   105   4e-23
gi|46249382 paired-like homeobox 2a [Homo sapiens]                    104   1e-22
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap...   103   2e-22
gi|4826912 paired-like homeodomain 3 [Homo sapiens]                   103   3e-22
gi|152963644 paired-like homeodomain transcription factor 1 [Hom...   103   3e-22
gi|122937321 UNC homeobox [Homo sapiens]                              100   1e-21
gi|21361183 paired-like homeodomain transcription factor 2 isofo...   100   2e-21
gi|24234711 paired-like homeodomain transcription factor 2 isofo...   100   2e-21
gi|24234708 paired-like homeodomain transcription factor 2 isofo...   100   2e-21
gi|57232759 intestine-specific homeobox [Homo sapiens]                100   3e-21
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                 99   4e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                  99   4e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                  99   4e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                   99   4e-21
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]    99   4e-21
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi...    99   4e-21
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                  98   9e-21
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                  98   9e-21

>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score =  733 bits (1893), Expect = 0.0
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 1   MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY 60
           MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY
Sbjct: 1   MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY 60

Query: 61  LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN 120
           LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN
Sbjct: 61  LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN 120

Query: 121 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV 180
           LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV
Sbjct: 121 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV 180

Query: 181 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP 240
           YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP
Sbjct: 181 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP 240

Query: 241 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI 300
           QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI
Sbjct: 241 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI 300

Query: 301 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT 343
           HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
Sbjct: 301 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT 343


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score =  206 bits (523), Expect = 3e-53
 Identities = 129/323 (39%), Positives = 182/323 (56%), Gaps = 41/323 (12%)

Query: 58  EPYLPEPAKPPAKYLQDLGPGPALNGG-HFY----------EGPAEAEEKTSKAASFPQL 106
           +P  P+P  PP    Q   P P      H Y          +G  + +E +S  ++  Q+
Sbjct: 93  QPSTPQPQPPPQPQPQQQQPQPQPPAQPHLYLQRGACKTPPDGSLKLQEGSSGHSAALQV 152

Query: 107 PLDCRGGPRDGPSNLQGSPGPCLASLHLPL------------SPGLPDSMELA---KNKS 151
           P   +      P     S    + S +L +            S  LP  +E A    NK 
Sbjct: 153 PCYAKESSLGEPELPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEKADSESNKG 212

Query: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKR 211
           KKRRNRTTF+++QLEELEKVFQKTHYPDVYAREQLA+RTDLTEARVQVWFQNRRAKWRKR
Sbjct: 213 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 272

Query: 212 ERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW-ASPGSGSPGGPCLVSPEGIPSPC 270
           ER+G++Q+ R  F+ AY++ +L R +++ Q+QN  W  + G+ SP   C+V  + +P+ C
Sbjct: 273 ERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVPCDPVPA-C 331

Query: 271 MSPYSHPHG----SVAGFMGVPAPSAAHPG------IYSIHGFPPTLGGHSFEPSSDGDY 320
           MSP++HP G    SV  F+ V + + +H G      ++      P L G  +E + + D 
Sbjct: 332 MSPHAHPPGSGASSVTDFLSV-SGAGSHVGQTHMGSLFGAASLSPGLNG--YELNGEPDR 388

Query: 321 KSPSLVSLRVKPKEPPGLLNWTT 343
           K+ S+ +LR+K KE    ++W T
Sbjct: 389 KTSSIAALRMKAKEHSAAISWAT 411


>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
          Length = 326

 Score =  204 bits (519), Expect = 9e-53
 Identities = 108/207 (52%), Positives = 137/207 (66%), Gaps = 6/207 (2%)

Query: 140 LPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQV 199
           L D  +   + SKKRR+RTTF++ QLEELEKVFQKTHYPDVY REQLALRT+LTEARVQV
Sbjct: 119 LGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQV 178

Query: 200 WFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPC 259
           WFQNRRAKWRKRERYG+IQ+ ++ F A YDISVLPRTDS+PQ+QN+LWA   SG      
Sbjct: 179 WFQNRRAKWRKRERYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTS 238

Query: 260 LVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTL-----GGHSFEP 314
            + P    S CM+PYSH   + + + G          +   + F  +L      GH+FE 
Sbjct: 239 CMLPRD-TSSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFET 297

Query: 315 SSDGDYKSPSLVSLRVKPKEPPGLLNW 341
             + + +S S+  LR+K KE    ++W
Sbjct: 298 KPEFERRSSSIAVLRMKAKEHTANISW 324


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score =  122 bits (305), Expect = 6e-28
 Identities = 73/159 (45%), Positives = 94/159 (59%), Gaps = 14/159 (8%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR RTTF+++QLEELE+ FQKTHYPDV+ RE+LA+R DLTEARVQVWFQNRRAKWR
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 384

Query: 210 KRERYGKIQEG-----RNPFTAAYDIS----VLPRTDSHPQLQNSLWASPGSGSPGGPCL 260
           KRE+ G            P +A + +S      P    HP L ++  A+  + +   P L
Sbjct: 385 KREKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSL 444

Query: 261 VSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS 299
             P G  S  + P   P G ++ F+G  A    HP   S
Sbjct: 445 PPPPG--SASLPPSGAPLG-LSTFLG--AAVFRHPAFIS 478


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score =  121 bits (304), Expect = 8e-28
 Identities = 110/330 (33%), Positives = 145/330 (43%), Gaps = 63/330 (19%)

Query: 27  GPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHF 86
           G  GT  A      A  R  RL   PAC        EP+ PPA       P PA      
Sbjct: 46  GILGTFPAERGARGAKERDRRLGARPACPKAPEEGSEPSPPPA-------PAPAPE---- 94

Query: 87  YEGPAE-AEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSME 145
           YE P     ++  +A   P LP+    GP  G + L     P                  
Sbjct: 95  YEAPRPYCPKEPGEARPSPGLPV----GPATGEAKLSEEEQP------------------ 132

Query: 146 LAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRR 205
               K K RRNRTTF+T+QL ELE+ F+K+HYPDVY+RE+LA + +L E RVQVWFQNRR
Sbjct: 133 ----KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRR 188

Query: 206 AKWRKRERYG----KIQE------GRNPFTAAYD-ISVLPRTDSHP---QLQNSLWASPG 251
           AKWR++E+      K+Q+       R+P +A    +   P +   P    L    W  P 
Sbjct: 189 AKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPP 248

Query: 252 SGSPGGPCLVSPEGIPSPCMS-PYSH-PHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLG- 308
               G   L S  G   P  S P S+ P      F+  P      PG+  +   PP+   
Sbjct: 249 LPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSP---PLGPGLQPLAPPPPSYPC 305

Query: 309 ----GHSFEPSSDGDYKSPSLVSLRVKPKE 334
               G  F P  + D ++ S+ +LR+K KE
Sbjct: 306 GPGFGDKF-PLDEADPRNSSIAALRLKAKE 334


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score =  112 bits (280), Expect = 5e-25
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 13/192 (6%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELEK F++THYPD+Y RE+LA RT LTEARVQVWF NRRA+WR
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSP 269
           K+    ++    +     +  + +P    + QL +S + +      GG  +  P+ +P  
Sbjct: 274 KQAGANQLAAFNHLLPGGFPPTGMPTLPPY-QLPDSTYPTTTISQDGGSTVHRPQPLP-- 330

Query: 270 CMSPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFP-----PTLGGHSFEPSSDGDYKSPS 324
              P +   G +A        S+A+   +S   +      P    +   P S+G   SP 
Sbjct: 331 ---PSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNG--LSPQ 385

Query: 325 LVSLRVKPKEPP 336
           ++S+   P   P
Sbjct: 386 VMSILGNPSAVP 397


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score =  112 bits (280), Expect = 5e-25
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 13/192 (6%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELEK F++THYPD+Y RE+LA RT LTEARVQVWF NRRA+WR
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 271

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSP 269
           K+    ++    +     +  + +P    + QL +S + +      GG  +  P+ +P  
Sbjct: 272 KQAGANQLAAFNHLLPGGFPPTGMPTLPPY-QLPDSTYPTTTISQDGGSTVHRPQPLP-- 328

Query: 270 CMSPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFP-----PTLGGHSFEPSSDGDYKSPS 324
              P +   G +A        S+A+   +S   +      P    +   P S+G   SP 
Sbjct: 329 ---PSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNG--LSPQ 383

Query: 325 LVSLRVKPKEPP 336
           ++S+   P   P
Sbjct: 384 VMSILGNPSAVP 395


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score =  112 bits (280), Expect = 5e-25
 Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 13/192 (6%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELEK F++THYPD+Y RE+LA RT LTEARVQVWF NRRA+WR
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSP 269
           K+    ++    +     +  + +P    + QL +S + +      GG  +  P+ +P  
Sbjct: 274 KQAGANQLAAFNHLLPGGFPPTGMPTLPPY-QLPDSTYPTTTISQDGGSTVHRPQPLP-- 330

Query: 270 CMSPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFP-----PTLGGHSFEPSSDGDYKSPS 324
              P +   G +A        S+A+   +S   +      P    +   P S+G   SP 
Sbjct: 331 ---PSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPAAPSNHMNPVSNG--LSPQ 385

Query: 325 LVSLRVKPKEPP 336
           ++S+   P   P
Sbjct: 386 VMSILGNPSAVP 397


>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
          Length = 268

 Score =  109 bits (273), Expect = 3e-24
 Identities = 77/197 (39%), Positives = 102/197 (51%), Gaps = 23/197 (11%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           + K+RRNRTTF+  QLE LE VF +THYPDV+ RE+LA++ +LTEARVQVWFQNRRAKWR
Sbjct: 35  RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94

Query: 210 KRERYGKIQE--GRNPFT-----AAYDISVLPRTDSHPQLQNSLWASPGSG---SPGGPC 259
           K ER    QE   + P          +I+  P  D     + +L A    G    P GP 
Sbjct: 95  KTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPF 154

Query: 260 LVSPEGIPSPCM--SPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSD 317
              P  +P   +  + Y+     VA   G P  S   P    +  F PT G  S      
Sbjct: 155 F--PSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGL-SFLPTYGCQS------ 205

Query: 318 GDYKSPSLVSLRVKPKE 334
              ++ S+ +LR+K +E
Sbjct: 206 --NRTASVATLRMKARE 220


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score =  108 bits (269), Expect = 9e-24
 Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 11/147 (7%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR RTTF++ QL+ELE+VF +THYPD+Y RE+LAL+ DLTEARVQVWFQNRRAK+R
Sbjct: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSP 269
           K+ER            AA + S   ++DS    ++    S    S GGP    P   P+P
Sbjct: 155 KQERAAAAAA-----AAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGP---GPNPNPTP 206

Query: 270 CMSPYSHPHGSVAGFMGVPAPSAAHPG 296
                    G   G     AP AA PG
Sbjct: 207 SCGANG---GGGGGPSPAGAPGAAGPG 230


>gi|34365783 visual system homeobox 2 [Homo sapiens]
          Length = 361

 Score =  107 bits (266), Expect = 2e-23
 Identities = 70/156 (44%), Positives = 89/156 (57%), Gaps = 13/156 (8%)

Query: 75  LGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHL 134
           LGPG  L G  FY  P   E  +   +   Q PL    GP D  S    S    ++S   
Sbjct: 79  LGPG-GLPG--FYTQPTFLEVLSDPQSVHLQ-PLGRASGPLD-TSQTASSDSEDVSSSDR 133

Query: 135 PLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTE 194
            +S    +  +    K KKRR+RT F+++QLEELEK F + HYPDVYARE LA++T+L E
Sbjct: 134 KMSKSALNQTK----KRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPE 189

Query: 195 ARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDI 230
            R+QVWFQNRRAKWRKRE+      GR+   A Y +
Sbjct: 190 DRIQVWFQNRRAKWRKREKCW----GRSSVMAEYGL 221


>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
          Length = 365

 Score =  107 bits (266), Expect = 2e-23
 Identities = 82/209 (39%), Positives = 93/209 (44%), Gaps = 45/209 (21%)

Query: 43  PRGPRLTRFPACG--PLEPYLPEPAKPPAKYLQDLG---------PGPALNGGHFYEG-- 89
           PRG R   F       LE  LP PA P     Q  G         PGP L+G     G  
Sbjct: 23  PRGSRPRGFAITDLLGLEAELPAPAGPG----QGSGCEGPAVAPCPGPGLDGSSLARGAL 78

Query: 90  --------------PAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGPCLASLHLP 135
                         PA A       A  P LP     GP          P P L      
Sbjct: 79  PLGLGLLCGFGTQPPAAARAPCLLLADVPFLP---PRGPEPAAPLAPSRPPPALGRQKRS 135

Query: 136 --LSPGLPDSMELAKN---------KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYARE 184
             +S    DS    +N         K KKRR+RT F+  QLEELEK F + HYPDVYARE
Sbjct: 136 DSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYARE 195

Query: 185 QLALRTDLTEARVQVWFQNRRAKWRKRER 213
            LA++T+L E R+QVWFQNRRAKWRKRE+
Sbjct: 196 MLAVKTELPEDRIQVWFQNRRAKWRKREK 224


>gi|7706659 paired related homeobox 2 [Homo sapiens]
          Length = 253

 Score =  105 bits (263), Expect = 4e-23
 Identities = 95/295 (32%), Positives = 129/295 (43%), Gaps = 78/295 (26%)

Query: 52  PACGPLEPYLPEPAKPPAKYLQDLGPGPALNG------GHFYEGPAEAEEKTSKAASFPQ 105
           PA GP       P  PPA     LGPG            H  +   E      + A+ P 
Sbjct: 13  PALGP-----GPPPPPPA-----LGPGDCAQARKNFSVSHLLD--LEEVAAAGRLAARPG 60

Query: 106 LPLDCRGG----PRDGPSNLQGSP--GPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTT 159
              + R G    P  G S  + +P  G C        SPG   +   AK K K+RRNRTT
Sbjct: 61  ARAEAREGAAREPSGGSSGSEAAPQDGECP-------SPGRGSA---AKRKKKQRRNRTT 110

Query: 160 FSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQE 219
           F++ QL+ LE+VF++THYPD + RE+LA R +L+EARVQVWFQNRRAK+R+ ER      
Sbjct: 111 FNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNER------ 164

Query: 220 GRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHG 279
                 A+   S+L        ++  +   P +        +SP+ +     SPYS    
Sbjct: 165 ---AMLASRSASLLKSYSQEAAIEQPVAPRPTA--------LSPDYLSWTASSPYS---- 209

Query: 280 SVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKE 334
                                   PP   G S  P++ G   + S+ SLR+K KE
Sbjct: 210 ----------------------TVPPYSPGSS-GPATPGVNMANSIASLRLKAKE 241


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score =  104 bits (260), Expect = 1e-22
 Identities = 70/177 (39%), Positives = 95/177 (53%), Gaps = 11/177 (6%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR RTTF++ QL+ELE+VF +THYPD+Y RE+LAL+ DLTEARVQVWFQNRRAK+R
Sbjct: 87  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGS----PGGPCLVSPEG 265
           K+ER     +G      A        ++     +++   +P S +    P  P L SP  
Sbjct: 147 KQERAAS-AKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRL 205

Query: 266 IPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGG----HSFEPSSDG 318
            PSP   P +   G   G    P   A   G+    G  P  G      +++P+  G
Sbjct: 206 SPSPL--PVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESG 260


>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
           sapiens]
          Length = 184

 Score =  103 bits (258), Expect = 2e-22
 Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 9/119 (7%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K RRNRTTF+T+QL +LE+ F+ +HYPDVY+RE+LA +  L E RVQVWFQNRRAKWR
Sbjct: 24  KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83

Query: 210 KRERY----GKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGS-PGGPCLVSP 263
           ++ER     G +   R P   A   +  P       L    W  PG  + PG P L+ P
Sbjct: 84  RQERLESGSGAVAAPRLPEAPALPFARPPAM----SLPLEPWLGPGPPAVPGLPRLLGP 138


>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
          Length = 302

 Score =  103 bits (256), Expect = 3e-22
 Identities = 80/236 (33%), Positives = 111/236 (47%), Gaps = 37/236 (15%)

Query: 130 ASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALR 189
           AS  LP   G P+   L   K K+RR RT F++ QL+ELE  FQ+  YPD+  RE++A+ 
Sbjct: 44  ASASLP--GGSPEDGSL---KKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVW 98

Query: 190 TDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWAS 249
           T+LTEARV+VWF+NRRAKWRKRER  + +  +  F A     V P  + +P      W  
Sbjct: 99  TNLTEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPP 158

Query: 250 PGSGSP------------------------GGPCLVSPEGIPSPCMSPYSHP-HGSVAGF 284
                P                          P  ++   +PS   +P + P  G++ G 
Sbjct: 159 KALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGL 218

Query: 285 MGVP---APSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSP---SLVSLRVKPKE 334
            G P   AP+A   G  S   +       +   SS   Y+ P   SL SLR+K K+
Sbjct: 219 GGGPPGLAPAAVSSGAVSC-PYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQ 273


>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
           sapiens]
          Length = 314

 Score =  103 bits (256), Expect = 3e-22
 Identities = 68/177 (38%), Positives = 95/177 (53%), Gaps = 16/177 (9%)

Query: 61  LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN 120
           LPE  +PP     D+GP   L        P E  E ++  +S  +LP   RGG   GP +
Sbjct: 13  LPEGLRPPPPPPHDMGPAFHLARP---ADPREPLENSASESSDTELPEKERGGEPKGPED 69

Query: 121 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV 180
             G+ G            G   + + AK K K+RR RT F++ QL+ELE  FQ+  YPD+
Sbjct: 70  -SGAGGT-----------GCGGADDPAKKK-KQRRQRTHFTSQQLQELEATFQRNRYPDM 116

Query: 181 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTD 237
             RE++A+ T+LTE RV+VWF+NRRAKWRKRER  ++   +  +   +   V P  D
Sbjct: 117 SMREEIAVWTNLTEPRVRVWFKNRRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYED 173


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score =  100 bits (250), Expect = 1e-21
 Identities = 80/233 (34%), Positives = 100/233 (42%), Gaps = 57/233 (24%)

Query: 104 PQLPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTF 163
           P LP  C  G    P  L  S  P   S      PG            K+RR RT F+ +
Sbjct: 73  PLLPAACGVGGDGQPFKLSDSGDPDKES------PGC-----------KRRRTRTNFTGW 115

Query: 164 QLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERY----GKIQE 219
           QLEELEK F ++HYPDV+ RE LALR DL E+RVQVWFQNRRAKWRK+E      G+   
Sbjct: 116 QLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPAH 175

Query: 220 GRNPFTAAYDISVLPRTDSHPQLQN--------------------------SLWASPGSG 253
             +P T + +  + P   +  +L+                           SL ++P S 
Sbjct: 176 NSHPTTCSGE-PMDPEEIARKELEKMEKKKRKHEKKLLKSQGRHLHSPGGLSLHSAPSSD 234

Query: 254 SPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGV--------PAPSAAHPGIY 298
           S  G   +SPE  P P       P    +G  G         PAP    P  Y
Sbjct: 235 SDSGGGGLSPEP-PEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFY 286



 Score = 30.8 bits (68), Expect = 1.8
 Identities = 39/139 (28%), Positives = 46/139 (33%), Gaps = 38/139 (27%)

Query: 24  EPPGPQGTPAAAPHLH--------PAPPRGPRLTRFPACGPLEPYL-----------PEP 64
           EPP P    A  P  H        PAPP  P     PA G  +P             P P
Sbjct: 245 EPPEPPPPAAKGPGAHASGAAGTAPAPPGEP-----PAPGTCDPAFYPSQRSGAGPQPRP 299

Query: 65  AKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQL-PLDCRGGPRDGPSNLQ- 122
            +P  K     GPG A+         A  E     AA  P+  P        D P   + 
Sbjct: 300 GRPADKDAASCGPGAAV---------AAVER---GAAGLPKASPFSVESLLSDSPPRRKA 347

Query: 123 GSPGPCLASLHLPLSPGLP 141
            S     A+  L  +PGLP
Sbjct: 348 ASNAAAAAAAGLDFAPGLP 366



 Score = 29.3 bits (64), Expect = 5.4
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 13  PAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRL 48
           P PGP   S  E P   G P       P+PP G  L
Sbjct: 493 PRPGPRPPSPAEEPATCGVPEPGAAAGPSPPEGEEL 528


>gi|21361183 paired-like homeodomain transcription factor 2 isoform
           c [Homo sapiens]
          Length = 324

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/102 (47%), Positives = 70/102 (68%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K ++RR RT F++ QL+ELE  FQ+  YPD+  RE++A+ T+LTEARV+VWF+NRRAKWR
Sbjct: 89  KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 148

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPG 251
           KRER  + +  +N F   ++  + P  D +P    + WA+ G
Sbjct: 149 KRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKG 190


>gi|24234711 paired-like homeodomain transcription factor 2 isoform
           a [Homo sapiens]
          Length = 271

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/102 (47%), Positives = 70/102 (68%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K ++RR RT F++ QL+ELE  FQ+  YPD+  RE++A+ T+LTEARV+VWF+NRRAKWR
Sbjct: 36  KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 95

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPG 251
           KRER  + +  +N F   ++  + P  D +P    + WA+ G
Sbjct: 96  KRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKG 137


>gi|24234708 paired-like homeodomain transcription factor 2 isoform
           b [Homo sapiens]
          Length = 317

 Score =  100 bits (249), Expect = 2e-21
 Identities = 48/102 (47%), Positives = 70/102 (68%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K ++RR RT F++ QL+ELE  FQ+  YPD+  RE++A+ T+LTEARV+VWF+NRRAKWR
Sbjct: 82  KKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 141

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPG 251
           KRER  + +  +N F   ++  + P  D +P    + WA+ G
Sbjct: 142 KRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKG 183


>gi|57232759 intestine-specific homeobox [Homo sapiens]
          Length = 245

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 66/146 (45%), Positives = 81/146 (55%), Gaps = 11/146 (7%)

Query: 78  GPALNGGHFYE--GPAEAEEKTSKAASFPQ-LPLDCRGGPRDGPSNL-QGSPGPCLASLH 133
           GPAL  G      G  EA +K S + S    L    R    D P    +  PG   AS  
Sbjct: 6   GPALCRGMERNSLGCCEAPKKLSLSFSIEAILKRPARRSDMDRPEGPGEEGPGEAAAS-- 63

Query: 134 LPLSPGL--PDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTD 191
                GL  P   +  + +  KRR RTTF+T QL ELEK+F  THYPDV+ R QLA R +
Sbjct: 64  ---GSGLEKPPKDQPQEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARIN 120

Query: 192 LTEARVQVWFQNRRAKWRKRERYGKI 217
           L EARVQ+WFQN+RAKWRK+E+ G +
Sbjct: 121 LPEARVQIWFQNQRAKWRKQEKIGNL 146


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELE+ F++THYPD+Y RE+LA R  LTEARVQVWF NRRA+WR
Sbjct: 215 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 274

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWAS--PGSGSPGGPCLVSPEGIP 267
           K+    ++    +     +  + +P   ++   + S   +  P + S     +  P+ +P
Sbjct: 275 KQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLP 334

Query: 268 SPCMSPY---SHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPS 324
              +      S+P  S A  +    PS  H        F P  G  +    + G+  SP 
Sbjct: 335 PSTVHQSTIPSNPDSSSAYCL----PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ 390

Query: 325 LVSL 328
           ++ L
Sbjct: 391 VMGL 394


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELE+ F++THYPD+Y RE+LA R  LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWAS--PGSGSPGGPCLVSPEGIP 267
           K+    ++    +     +  + +P   ++   + S   +  P + S     +  P+ +P
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLP 335

Query: 268 SPCMSPY---SHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPS 324
              +      S+P  S A  +    PS  H        F P  G  +    + G+  SP 
Sbjct: 336 PSTVHQSTIPSNPDSSSAYCL----PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ 391

Query: 325 LVSL 328
           ++ L
Sbjct: 392 VMGL 395


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELE+ F++THYPD+Y RE+LA R  LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWAS--PGSGSPGGPCLVSPEGIP 267
           K+    ++    +     +  + +P   ++   + S   +  P + S     +  P+ +P
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLP 335

Query: 268 SPCMSPY---SHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPS 324
              +      S+P  S A  +    PS  H        F P  G  +    + G+  SP 
Sbjct: 336 PSTVHQSTIPSNPDSSSAYCL----PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ 391

Query: 325 LVSL 328
           ++ L
Sbjct: 392 VMGL 395


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELE+ F++THYPD+Y RE+LA R  LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWAS--PGSGSPGGPCLVSPEGIP 267
           K+    ++    +     +  + +P   ++   + S   +  P + S     +  P+ +P
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLP 335

Query: 268 SPCMSPY---SHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPS 324
              +      S+P  S A  +    PS  H        F P  G  +    + G+  SP 
Sbjct: 336 PSTVHQSTIPSNPDSSSAYCL----PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ 391

Query: 325 LVSL 328
           ++ L
Sbjct: 392 VMGL 395


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 45/66 (68%), Positives = 56/66 (84%)

Query: 148 KNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAK 207
           K K K+RRNRTTF++ QL+ LE+VF++THYPD + RE LA R +LTEARVQVWFQNRRAK
Sbjct: 89  KKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAK 148

Query: 208 WRKRER 213
           +R+ ER
Sbjct: 149 FRRNER 154


>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
           sapiens]
          Length = 245

 Score = 99.4 bits (246), Expect = 4e-21
 Identities = 45/66 (68%), Positives = 56/66 (84%)

Query: 148 KNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAK 207
           K K K+RRNRTTF++ QL+ LE+VF++THYPD + RE LA R +LTEARVQVWFQNRRAK
Sbjct: 89  KKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAK 148

Query: 208 WRKRER 213
           +R+ ER
Sbjct: 149 FRRNER 154


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score = 98.2 bits (243), Expect = 9e-21
 Identities = 45/96 (46%), Positives = 64/96 (66%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELE+ F++THYPD+Y RE+LA R  LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNS 245
           K+    ++    +     +  + +P   ++   + S
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETS 311


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score = 98.2 bits (243), Expect = 9e-21
 Identities = 45/96 (46%), Positives = 64/96 (66%)

Query: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
           K K+RR+RTTF+  QLEELE+ F++THYPD+Y RE+LA R  LTEARVQVWF NRRA+WR
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNS 245
           K+    ++    +     +  + +P   ++   + S
Sbjct: 276 KQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETS 311


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.136    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,701,807
Number of Sequences: 37866
Number of extensions: 1441877
Number of successful extensions: 9890
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 709
Number of HSP's that attempted gapping in prelim test: 6256
Number of HSP's gapped (non-prelim): 3615
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.