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Search of human proteins with 103485496
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|103485496 chromatin modifying protein 1A isoform 2 [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|103485496 chromatin modifying protein 1A isoform 2 [Homo sapi... 369 e-102
gi|31542306 chromatin modifying protein 1B [Homo sapiens] 211 2e-55
gi|38372933 chromatin modifying protein 2A [Homo sapiens] 82 4e-16
gi|7656922 chromatin modifying protein 2A [Homo sapiens] 82 4e-16
gi|33350928 disabled homolog 1 [Homo sapiens] 38 0.006
gi|55770834 centromere protein F [Homo sapiens] 36 0.024
gi|149408122 RNA helicase LGP2 [Homo sapiens] 35 0.041
gi|28827795 chromatin modifying protein 4B [Homo sapiens] 35 0.041
gi|186659512 calmodulin regulated spectrin-associated protein 1 ... 34 0.091
gi|21735548 centrosomal protein 2 [Homo sapiens] 33 0.20
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 33 0.20
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens] 32 0.26
gi|212549756 calcium/calmodulin-dependent protein kinase II delt... 32 0.35
gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ... 32 0.35
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 32 0.45
gi|28269672 serologically defined colon cancer antigen 8 [Homo s... 32 0.45
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 31 0.59
gi|155030206 Rap guanine nucleotide exchange factor (GEF) 4 isof... 31 0.59
gi|155030204 Rap guanine nucleotide exchange factor (GEF) 4 isof... 31 0.59
gi|70980531 GGA binding partner [Homo sapiens] 31 0.59
gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens] 31 0.77
gi|157739938 dehydrogenase/reductase (SDR family) member 7C [Hom... 31 0.77
gi|73623035 sperm associated antigen 5 [Homo sapiens] 30 1.0
gi|110611228 utrophin [Homo sapiens] 30 1.0
gi|55770832 cerebellar degeneration-related protein 2 [Homo sapi... 30 1.3
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 30 1.3
gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2 ... 30 1.3
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 30 1.3
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 30 1.3
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens] 30 1.3
>gi|103485496 chromatin modifying protein 1A isoform 2 [Homo
sapiens]
Length = 196
Score = 369 bits (946), Expect = e-102
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV 60
MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV
Sbjct: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV 60
Query: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ 120
NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ
Sbjct: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ 120
Query: 121 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 180
NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV
Sbjct: 121 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSV 180
Query: 181 RSQEDQLSRRLAALRN 196
RSQEDQLSRRLAALRN
Sbjct: 181 RSQEDQLSRRLAALRN 196
>gi|31542306 chromatin modifying protein 1B [Homo sapiens]
Length = 199
Score = 211 bits (538), Expect = 2e-55
Identities = 110/197 (55%), Positives = 153/197 (77%), Gaps = 4/197 (2%)
Query: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV 60
M+ LF LKF AK+L + AKK +K+ KAE+AK+KKA+ + N+E AR++AENAIR+KN+ V
Sbjct: 4 MEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAV 63
Query: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQ 120
N+LRM++RVDAVA++VQTAVTM VTK+MA V K++D L TM+L+K+S++MD+FE Q +
Sbjct: 64 NFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQFE 123
Query: 121 NLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG-ASAVGESS 179
LDV T MED+MSS TTLTTPQ QVD L+ ++A+E G LD +LP+G +VG S
Sbjct: 124 TLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAG---LDLNMELPQGQTGSVGTSV 180
Query: 180 VRSQEDQLSRRLAALRN 196
+++D+LS+RLA LR+
Sbjct: 181 ASAEQDELSQRLARLRD 197
>gi|38372933 chromatin modifying protein 2A [Homo sapiens]
Length = 222
Score = 81.6 bits (200), Expect = 4e-16
Identities = 44/180 (24%), Positives = 94/180 (52%)
Query: 13 KQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAV 72
++L++ +K E K A +KK Q ++ R+ A++ +R + ++ M + + AV
Sbjct: 27 RELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAV 86
Query: 73 ASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDS 132
+ K+QT + + + M VTKA+ + L ++ +M FE+Q + +D+ +M D+
Sbjct: 87 SLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDA 146
Query: 133 MSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLA 192
+ A +E+ D+++ Q+ +E GL + D+LS LP ++ ++ + + + LA
Sbjct: 147 IDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAAASALA 206
>gi|7656922 chromatin modifying protein 2A [Homo sapiens]
Length = 222
Score = 81.6 bits (200), Expect = 4e-16
Identities = 44/180 (24%), Positives = 94/180 (52%)
Query: 13 KQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAV 72
++L++ +K E K A +KK Q ++ R+ A++ +R + ++ M + + AV
Sbjct: 27 RELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAV 86
Query: 73 ASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDS 132
+ K+QT + + + M VTKA+ + L ++ +M FE+Q + +D+ +M D+
Sbjct: 87 SLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDA 146
Query: 133 MSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLA 192
+ A +E+ D+++ Q+ +E GL + D+LS LP ++ ++ + + + LA
Sbjct: 147 IDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAAASALA 206
>gi|33350928 disabled homolog 1 [Homo sapiens]
Length = 555
Score = 37.7 bits (86), Expect = 0.006
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVE 43
LFQL + KQ E+L KKA+KD + EQA V + +L+++VE
Sbjct: 157 LFQLIYELKQREELEKKAQKDKQCEQA-VYQTILEEDVE 194
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 35.8 bits (81), Expect = 0.024
Identities = 46/183 (25%), Positives = 88/183 (48%), Gaps = 27/183 (14%)
Query: 15 LEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNW-LRMASR----- 68
+EKL + E D K +Q + + L ++ E ++++ K E + L+M+
Sbjct: 2121 IEKLRVRIEADEK-KQLHIAEKLKERERE------NDSLKDKVENLERELQMSEENQELV 2173
Query: 69 -VDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTS 127
+DA SK + T+K + MA+ K + +DL + S + +Q+Q S
Sbjct: 2174 ILDAENSKAEVE-TLKTQIEEMARSLKVFE-----LDLVTLRSEKENLTKQIQEKQGQLS 2227
Query: 128 VMEDSMSSATTLTTPQEQVDSLIMQIAEEN--GLEVL-DQLSQLPEGASAV-GESSVRSQ 183
++ +SS +L +EQ + +QI EE+ +E+L +QL +L E +A+ G+ +
Sbjct: 2228 ELDKLLSSFKSLLEEKEQAE---IQIKEESKTAVEMLQNQLKELNEAVAALCGDQEIMKA 2284
Query: 184 EDQ 186
+Q
Sbjct: 2285 TEQ 2287
>gi|149408122 RNA helicase LGP2 [Homo sapiens]
Length = 678
Score = 35.0 bits (79), Expect = 0.041
Identities = 41/180 (22%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 14 QLEKLAKKAEKDSKAEQA-KVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAV 72
++ +L++K +Q K+ +A ++ RVYA + +R+ N+ + VDA+
Sbjct: 245 EMPELSRKFGTQMYEQQVVKLSEAAALAGLQEQRVYALH-LRRYNDALLIHDTVRAVDAL 303
Query: 73 ASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSV-MDRFEQQVQNLDVHTSVMED 131
A+ +Q + VTK Q+ A + L+ D +K + + L++ +++
Sbjct: 304 AA-LQDFYHREHVTKT--QILCAERRLLALFDDRKNELAHLATHGPENPKLEMLEKILQR 360
Query: 132 SMSSATT-----LTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQ 186
SS+ + T ++ SL++ + ++ GL+ +D +QL GA +S+ +Q DQ
Sbjct: 361 QFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQSTHMTQRDQ 420
>gi|28827795 chromatin modifying protein 4B [Homo sapiens]
Length = 224
Score = 35.0 bits (79), Expect = 0.041
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 35/163 (21%)
Query: 12 AKQLEKLAKKAEKD---SKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASR 68
+K+ E L KK E++ +K K K+A LQ A+++K + + ++
Sbjct: 37 SKKQEFLEKKIEQELTAAKKHGTKNKRAALQ------------ALKRKKR---YEKQLAQ 81
Query: 69 VDAVASKVQ-------TAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVM-DRFEQQVQ 120
+D S ++ A T V KNM KA+ A MD+ KV +M D +QQ
Sbjct: 82 IDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQEL 141
Query: 121 NLDVHTSV---------MEDSMSSATTLTTPQEQVDSLIMQIA 154
++ T++ ++ A QE++D +++I+
Sbjct: 142 AEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEIS 184
>gi|186659512 calmodulin regulated spectrin-associated protein 1 [Homo
sapiens]
Length = 1602
Score = 33.9 bits (76), Expect = 0.091
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 26/179 (14%)
Query: 6 FQLKFTAKQLEKLAKKA-----EKDSKAEQAKVKKALLQKNVECARVYA-----ENAIRK 55
F K K ++LAKK ++ KAE+A+V+K L+ VE R A E+ +RK
Sbjct: 1271 FFFKDEQKAEDELAKKRAAFLLKQQRKAEEARVRKQQLEAEVELKRDEARRKAEEDRVRK 1330
Query: 56 KNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDL-----QKVSS 110
+ E R + + + K Q + +G+ K ++ K K++ + K SS
Sbjct: 1331 EEEKAR--RELIKQEYLRRKQQQILEEQGLGKPKSKPKKPRPKSVHREESCSDSGTKCSS 1388
Query: 111 VMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLP 169
D + S+S A+ TT E V S +E L LS+ P
Sbjct: 1389 TPDNLSRTQSG---------SSLSLASAATTEPESVHSGGTPSQRVESMEALPILSRNP 1438
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 32.7 bits (73), Expect = 0.20
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 25/191 (13%)
Query: 11 TAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVD 70
TA+ KL K E +S+ E+A+ + + V + EN +A
Sbjct: 1383 TARSALKL-KNEEVESERERAQALQEQGELKVAQGKALQEN-------------LALLTQ 1428
Query: 71 AVASKVQTAVTMKGVTKNMAQVTKALDKALS--TMDLQKVSSVMDRFEQQVQNLDVHTSV 128
+A + + T++G + + + + AL ++DL+K + +D ++Q+Q L+ SV
Sbjct: 1429 TLAEREEEVETLRGQIQELEKQREMQKAALELLSLDLKKRNQEVDLQQEQIQELEKCRSV 1488
Query: 129 MED----SMSSATTLTTPQEQVDSLIMQIAEENGLEVLD-QLSQLPEGASAVGESSVRSQ 183
+E LT +EQ+ L + E VL+ QL +L + + S R Q
Sbjct: 1489 LEHLPMAVQEREQKLTVQREQIREL--EKDRETQRNVLEHQLLELEKKDQMI--ESQRGQ 1544
Query: 184 EDQLSRRLAAL 194
L ++L L
Sbjct: 1545 VQDLKKQLVTL 1555
Score = 30.8 bits (68), Expect = 0.77
Identities = 39/181 (21%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 12 AKQLEKLAK-KAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVD 70
AK LE L + K E + + ++ + + +Q E R AE+A+ + +++
Sbjct: 874 AKALESLEREKMELEMRLKEQQTEMEAIQAQREEERTQAESALCQM-----------QLE 922
Query: 71 AVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVME 130
+V T+ K +A ++ L++ M +QK+ Q Q + + E
Sbjct: 923 TEKERVSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGILQTQLQEAQRELKE 982
Query: 131 DSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRR 190
+ L QE+ SL +Q + +V D SQL + S R E ++ +
Sbjct: 983 AARQHRDDLAALQEESSSL-LQDKMDLQKQVEDLKSQL-----VAQDDSQRLVEQEVQEK 1036
Query: 191 L 191
L
Sbjct: 1037 L 1037
Score = 30.8 bits (68), Expect = 0.77
Identities = 33/179 (18%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 25 DSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKG 84
D +AE + +KALL +CA E+ + + +WL+ + + +++
Sbjct: 1891 DLRAESREQEKALLALQQQCAEQAQEHEVETRALQDSWLQAQAVLKERDQELEALRAESQ 1950
Query: 85 VTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQV-------QNLDVHTSVMEDSMSSAT 137
+++ + +A +AL L K + + EQ + ++L+ T+ ++ S+ +
Sbjct: 1951 SSRHQEEAARARAEALQEA-LGKAHAALQGKEQHLLEQAELSRSLEASTATLQASLDACQ 2009
Query: 138 TLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQE-DQLSRRLAALR 195
+ E+ + ++ L + + QL + + E QE +QL + A R
Sbjct: 2010 AHSRQLEEALRIQEGEIQDQDLRYQEDVQQLQQALAQRDEELRHQQEREQLLEKSLAQR 2068
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 32.7 bits (73), Expect = 0.20
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Query: 7 QLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMA 66
Q + A+Q+E AK + + KA A+ KKAL ++ EC ++ IR+ +L++
Sbjct: 345 QAQTVAEQVEMKAKVVQSEVKAVTARHKKALEER--ECELLWKVEKIRQVKAKSLYLQV- 401
Query: 67 SRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHT 126
++ +K+++ ++ + + + +ALD L+ DR QVQ L
Sbjct: 402 EKLRQNLNKLESTIS---AVQQVLEEGRALDILLA----------RDRMLAQVQELKTVR 448
Query: 127 SVMEDSMSSATTLTTPQE 144
S+++ T P +
Sbjct: 449 SLLQPQEDDRVMFTPPDQ 466
>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
Length = 898
Score = 32.3 bits (72), Expect = 0.26
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 21/182 (11%)
Query: 1 MDDTLFQLKFTAKQLEKLAKK---------AEKDSKAEQAKVKKALLQKNVECARVYAEN 51
+ D Q + K+L K KK +EKD+ E+ K + ++++ + E+
Sbjct: 198 VQDKYLQQEHIIKKLIKENKKHQELFVDICSEKDNLREELKKRTETEKQHMNTIK-QLES 256
Query: 52 AIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSV 111
I + N+ V ASR +A V ++ + K MAQ + +K +K + V
Sbjct: 257 RIEELNKEVK----ASRDQLIAQDVTAKNAVQQLHKEMAQRMEQANKKCEEARQEKEAMV 312
Query: 112 MDRFEQQVQNLDV--HTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLP 169
M + ++LD+ +E + A E+ + I Q+++E G L QL +
Sbjct: 313 MKYVRGEKESLDLRKEKETLEKKLRDA---NKELEKNTNKIKQLSQEKGR--LHQLYETK 367
Query: 170 EG 171
EG
Sbjct: 368 EG 369
>gi|212549756 calcium/calmodulin-dependent protein kinase II delta
isoform 4 [Homo sapiens]
Length = 489
Score = 32.0 bits (71), Expect = 0.35
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 32 KVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVT-----MKGVT 86
K+K A+L + A ++ KK +GV + +S V + S + T +K
Sbjct: 299 KLKGAILTTMLATRNFSAAKSLLKKPDGVKKRKSSSSVQMMESTESSNTTIEDEDVKARK 358
Query: 87 KNMAQVTKALDKALSTMDLQKVSSVMD----RFEQQ-----VQNLDVHTSVMEDSMSSA 136
+ + +VT+ L +A++ D + + + D FE + V+ +D H E+++S +
Sbjct: 359 QEIIKVTEQLIEAINNGDFEAYTKICDPGLTAFEPEALGNLVEGMDFHRFYFENALSKS 417
>gi|94538370 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform 1
[Homo sapiens]
Length = 621
Score = 32.0 bits (71), Expect = 0.35
Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 17/191 (8%)
Query: 13 KQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAV 72
K+ EK K+AEK +KAE + ++ +K + A A K+ E V R A+
Sbjct: 284 KEEEKAKKEAEKKAKAEAKRKEQEAKEKQRQAELEAARLAKEKEEEEV-------RQQAL 336
Query: 73 ASKVQTAVTMKGVTKNMAQVTKALD--KALSTMDLQKVSSVMDRFEQQVQNLDVHT-SVM 129
+K + + K + K ++ + S + ++V +M+ E+ L++ + +
Sbjct: 337 LAKKEKDIQKKAIKKERQKLRNSCKTWNHFSDNEAERV-KMMEEVEKLCDRLELASLQCL 395
Query: 130 EDSMSSAT------TLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQ 183
++++S T L E+++ I + EE + + G S
Sbjct: 396 NETLTSCTKEVGKAALEKQIEEINEQIRKEKEEAEARMRQASKNTEKSTGGGGNGSKNWS 455
Query: 184 EDQLSRRLAAL 194
ED L + A+
Sbjct: 456 EDDLQLLIKAV 466
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 31.6 bits (70), Expect = 0.45
Identities = 33/165 (20%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 12 AKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVY--AENAIRKKNE-GVNWLRMASR 68
A+ L + K+ + + KA Q +V++ L A + A++ + + E +W +
Sbjct: 1520 AQSLHRKHKELQVEVKAHQGQVQRVLSSGRSLAASGHPQAQHIVEQCQELEGHWAELERA 1579
Query: 69 VDAVASKVQTAVTMKGVTKNMAQVTKALDKA---LSTMDLQKVSS----VMDRFEQQVQN 121
+A A +Q AVT + +++++ +++ +S+ D + + ++++ + +
Sbjct: 1580 CEARAQCLQQAVTFQQYFLDVSELEGWVEEKRPLVSSRDYGRDEAATLRLINKHQALQEE 1639
Query: 122 LDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLS 166
L ++ S ME+ +A TLT P+ ++Q L L +L+
Sbjct: 1640 LAIYWSSMEELDQTAQTLTGPEVPEQQRVVQERLREQLRALQELA 1684
>gi|28269672 serologically defined colon cancer antigen 8 [Homo
sapiens]
Length = 713
Score = 31.6 bits (70), Expect = 0.45
Identities = 34/183 (18%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAK--VKKALLQKNVECARVYAENAIRKKNEGVNW 62
L Q K+LE+ A++ EK+ ++Q K ++K +++K + R Y + + ++ N
Sbjct: 358 LIQCDQLRKELERQAERLEKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQ--NI 415
Query: 63 LRMASRVDAVASKVQTAVT-MKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQN 121
++ ++V+ V + +A+ ++ + +A + K M Q + M++ E + ++
Sbjct: 416 AQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEH 475
Query: 122 LDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVR 181
+ D L ++++ L +++ E L Q + A+ E +R
Sbjct: 476 REFRAKTNRD-------LEIKDQEIEKLRIELDESK-----QHLEQEQQKAALAREECLR 523
Query: 182 SQE 184
E
Sbjct: 524 LTE 526
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 31.2 bits (69), Expect = 0.59
Identities = 44/209 (21%), Positives = 87/209 (41%), Gaps = 25/209 (11%)
Query: 13 KQLEKLAKKAEKDS----KAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASR 68
++LE L + EK+ +AE KV+KA ++ + A+ + I +++E + + R
Sbjct: 580 ERLESLNIQREKEELEQREAELQKVRKAEEERLRQEAKEREKERILQEHEQIKKKTVRER 639
Query: 69 VDAVASKVQTAVTMKGVTKN----------MAQVTKALDKALSTMD--LQKVSSVMDRFE 116
++ + A K + MA+ + L+K + L+ +D FE
Sbjct: 640 LEQIKKTELGAKAFKDIDIEDLEELDPDFIMAKQVEQLEKEKKELQERLKNQEKKIDYFE 699
Query: 117 Q--QVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEG--- 171
+ +++ + + S E+ L QE+ MQ+ E LE +++S++ E
Sbjct: 700 RAKRLEEIPLIKSAYEEQRIKDMDLWEQQEEERITTMQLEREKALEHKNRMSRMLEDRDL 759
Query: 172 ----ASAVGESSVRSQEDQLSRRLAALRN 196
A +S + Q RLA R+
Sbjct: 760 FVMRLKAARQSVYEEKLKQFEERLAEERH 788
>gi|155030206 Rap guanine nucleotide exchange factor (GEF) 4 isoform
b [Homo sapiens]
Length = 867
Score = 31.2 bits (69), Expect = 0.59
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 8 LKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNE 58
LK +LEK+ K+ +D+KA Q K K L Q N R IR +E
Sbjct: 475 LKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDE 525
>gi|155030204 Rap guanine nucleotide exchange factor (GEF) 4 isoform
a [Homo sapiens]
Length = 1011
Score = 31.2 bits (69), Expect = 0.59
Identities = 19/51 (37%), Positives = 25/51 (49%)
Query: 8 LKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNE 58
LK +LEK+ K+ +D+KA Q K K L Q N R IR +E
Sbjct: 619 LKEQLPELEKIVKQISEDAKAPQKKHKVLLQQFNTGDERAQKRQPIRGSDE 669
>gi|70980531 GGA binding partner [Homo sapiens]
Length = 441
Score = 31.2 bits (69), Expect = 0.59
Identities = 30/154 (19%), Positives = 70/154 (45%), Gaps = 7/154 (4%)
Query: 14 QLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVA 73
Q ++L + + + + + K+K+AL+Q++ E + + ++ L A++++ A
Sbjct: 254 QHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEA 313
Query: 74 SKVQTAVTMKGVTKNMAQV---TKALDKALSTMDLQKVSSVMDRFEQQVQNLD---VHTS 127
K ++ KN+ + + L K D +KVS + + Q+ + + V +
Sbjct: 314 VKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAA 373
Query: 128 VMEDSMSSATTLTTPQEQV-DSLIMQIAEENGLE 160
++E+ S + ++ D LI I E+ L+
Sbjct: 374 IIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLD 407
>gi|150010558 myosin, heavy polypeptide 15 [Homo sapiens]
Length = 1946
Score = 30.8 bits (68), Expect = 0.77
Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 38/218 (17%)
Query: 1 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGV 60
++D F+LK LE + K+EK+ + + KVK L + VE NE +
Sbjct: 955 LEDECFELKKEIDDLETMLVKSEKEKRTTEHKVKN--LTEEVEFL-----------NEDI 1001
Query: 61 NWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMD-----LQKVSSVMDRF 115
+ L A++V A + QT + + ++ ++KA K +D L++
Sbjct: 1002 SKLNRAAKVVQEAHQ-QTLDDLHMEEEKLSSLSKANLKLEQQVDELEGALEQERKARMNC 1060
Query: 116 EQQVQNLDVHTSVMEDSMSS--------ATTLTTPQEQVDSLIMQIAEENGL-------- 159
E+++ L+ + + +SM + A L + ++ + ++ E GL
Sbjct: 1061 ERELHKLEGNLKLNRESMENLESSQRHLAEELRKKELELSQMNSKVENEKGLVAQLQKTV 1120
Query: 160 -EVLDQLSQLPEGASAVGESSVRSQEDQ--LSRRLAAL 194
E+ Q+ L E A + + + ++ L++ LA L
Sbjct: 1121 KELQTQIKDLKEKLEAERTTRAKMERERADLTQDLADL 1158
>gi|157739938 dehydrogenase/reductase (SDR family) member 7C [Homo
sapiens]
Length = 311
Score = 30.8 bits (68), Expect = 0.77
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 8 LKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMAS 67
L F +++ +L K+ +K + A+ ECARV+ R G NW R+ +
Sbjct: 19 LLFIYQEVSRLWSKSAVQNKV--VVITDAISGLGKECARVFHTGGARLVLCGKNWERLEN 76
Query: 68 RVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMD 113
DA+ S +A +K L +DL +S V D
Sbjct: 77 LYDALIS--------------VADPSKTFTPKLVLLDLSDISCVPD 108
>gi|73623035 sperm associated antigen 5 [Homo sapiens]
Length = 1193
Score = 30.4 bits (67), Expect = 1.0
Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 5/157 (3%)
Query: 1 MDDTLFQLKFTAKQLEKLAKKAEKD-SKAEQAKVKKALLQKNVECARVYAENAIRKKNEG 59
+ DT+ L TAK +A E+D K Q K LL + ++ ++ + +++K E
Sbjct: 841 LKDTVENL--TAKLASTIADNQEQDLEKTRQYSQKLGLLTEQLQSLTLFLQTKLKEKTEQ 898
Query: 60 VNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQV 119
L + + T G + V ++ L S R V
Sbjct: 899 ETLLLSTACPPTQEHPLPNDRTFLGSI--LTAVADEEPESTPVPLLGSDKSAFTRVASMV 956
Query: 120 QNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEE 156
T ME+S++ + +TT + + SL+ + EE
Sbjct: 957 SLQPAETPGMEESLAEMSIMTTELQSLCSLLQESKEE 993
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 30.4 bits (67), Expect = 1.0
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 8 LKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMAS 67
LKF K LE + + D ++ Q + +LQ+ E E+ +K+ + L + +
Sbjct: 1786 LKFVEKHLESSDEDEKMDEESAQIE---EVLQRGEEMLHQPMEDN-KKEKIRLQLLLLHT 1841
Query: 68 RVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMD----LQKVSSVMDRFEQQVQNLD 123
R + + A+ ++ + M Q+ + +L D + K+ MD E + +
Sbjct: 1842 RYNKIK-----AIPIQ--QRKMGQLASGIRSSLLPTDYLVEINKILLCMDDVELSLNVPE 1894
Query: 124 VHTSVMEDSMSSATTLTTPQEQVDSLIMQIA 154
++T++ ED +L ++Q+D L QIA
Sbjct: 1895 LNTAIYEDFSFQEDSLKNIKDQLDKLGEQIA 1925
>gi|55770832 cerebellar degeneration-related protein 2 [Homo
sapiens]
Length = 454
Score = 30.0 bits (66), Expect = 1.3
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 7 QLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVEC 44
QL TA++LE+ +K DSKA Q K+ L + +EC
Sbjct: 86 QLDVTARELEETNQKLVADSKASQQKILS--LTETIEC 121
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 30.0 bits (66), Expect = 1.3
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 98 KALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEEN 157
+A S ++ +++ + D+ E L +++ L T + Q+D I Q++EEN
Sbjct: 268 QAASPLEPKELEELRDKNESLTMRL-------HETLKQCQDLKTEKSQMDRKINQLSEEN 320
Query: 158 G------LEVLDQLSQLPEGASAVGESSVRSQEDQLSRR 190
G E L QL + + + E ++ ++ L ++
Sbjct: 321 GDLSFKLREFASHLQQLQDALNELTEEHSKATQEWLEKQ 359
>gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2
[Homo sapiens]
Length = 1235
Score = 30.0 bits (66), Expect = 1.3
Identities = 33/164 (20%), Positives = 72/164 (43%), Gaps = 7/164 (4%)
Query: 4 TLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWL 63
T +LK++ +LE + KK EQ++++ LL N+E + I+++ +
Sbjct: 708 TQTRLKYSQNELEMIKKKHLVAFYQEQSQLQSELL--NIESQCIMLSEGIKERQRRIK-- 763
Query: 64 RMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLD 123
++D V + + +N+ + K +D +++ + VQ L+
Sbjct: 764 EFQEKIDKVEDDIFQHFCEEIGVENIREFENKHVKRQQEIDQKRLEFEKQKTRLNVQ-LE 822
Query: 124 VHTSVMEDSMSSATTL--TTPQEQVDSLIMQIAEENGLEVLDQL 165
S ++ ++ TL T + D ++ AEEN L+ +++L
Sbjct: 823 YSRSHLKKKLNKINTLKETIQKGSEDIDHLKKAEENCLQTVNEL 866
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/152 (19%), Positives = 70/152 (46%), Gaps = 30/152 (19%)
Query: 4 TLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKAL---------LQKNVECARVYAENAIR 54
T+ + + T K +++ +KAE+ + + K+K A QK ++CA+ A+ + +
Sbjct: 751 TIEESEETLKNTKEIQRKAEEKYEVLENKMKNAEAERERELKDAQKKLDCAKTKADASSK 810
Query: 55 KKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDR 114
K E V+A+ +++ +K + Q +A+++A+ +
Sbjct: 811 KMKE------KQQEVEAITLELE---ELKREHTSYKQQLEAVNEAIKS------------ 849
Query: 115 FEQQVQNLDVHTSVMEDSMSSATTLTTPQEQV 146
+E Q++ + + ++S++ A T Q++V
Sbjct: 850 YESQIEVMAAEVAKNKESVNKAQEEVTKQKEV 881
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/152 (19%), Positives = 70/152 (46%), Gaps = 30/152 (19%)
Query: 4 TLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKAL---------LQKNVECARVYAENAIR 54
T+ + + T K +++ +KAE+ + + K+K A QK ++CA+ A+ + +
Sbjct: 751 TIEESEETLKNTKEIQRKAEEKYEVLENKMKNAEAERERELKDAQKKLDCAKTKADASSK 810
Query: 55 KKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDR 114
K E V+A+ +++ +K + Q +A+++A+ +
Sbjct: 811 KMKE------KQQEVEAITLELE---ELKREHTSYKQQLEAVNEAIKS------------ 849
Query: 115 FEQQVQNLDVHTSVMEDSMSSATTLTTPQEQV 146
+E Q++ + + ++S++ A T Q++V
Sbjct: 850 YESQIEVMAAEVAKNKESVNKAQEEVTKQKEV 881
>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/152 (19%), Positives = 70/152 (46%), Gaps = 30/152 (19%)
Query: 4 TLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKAL---------LQKNVECARVYAENAIR 54
T+ + + T K +++ +KAE+ + + K+K A QK ++CA+ A+ + +
Sbjct: 751 TIEESEETLKNTKEIQRKAEEKYEVLENKMKNAEAERERELKDAQKKLDCAKTKADASSK 810
Query: 55 KKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDR 114
K E V+A+ +++ +K + Q +A+++A+ +
Sbjct: 811 KMKE------KQQEVEAITLELE---ELKREHTSYKQQLEAVNEAIKS------------ 849
Query: 115 FEQQVQNLDVHTSVMEDSMSSATTLTTPQEQV 146
+E Q++ + + ++S++ A T Q++V
Sbjct: 850 YESQIEVMAAEVAKNKESVNKAQEEVTKQKEV 881
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.120 0.303
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,031,614
Number of Sequences: 37866
Number of extensions: 163763
Number of successful extensions: 894
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 131
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.