Guide to the Human Genome
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Name: CHMP4B Sequence: fasta or formatted (224aa) NCBI GI: 28827795
Description:

chromatin modifying protein 4B

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         23           2
 C cysteine            0.0          0           0
 D aspartate           6.2         14           3
 E glutamate          14.7         33           3
 F phenylalanine       2.7          6           1
 G glycine             6.7         15           3
 H histidine           0.9          2           1
 I isoleucine          4.5         10           1
 K lysine             11.6         26           3
 L leucine             9.8         22           2
 M methionine          4.0          9           1
 N asparagine          4.0          9           1
 P proline             4.0          9           1
 Q glutamine           5.4         12           2
 R arginine            2.7          6           1
 S serine              4.0          9           1
 T threonine           4.5         10           1
 V valine              2.7          6           1
 W tryptophan          0.4          1           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromatin modifying protein 4B 
CHMP4C                0.638   chromatin modifying protein 4C 
CHMP4A                0.594   chromatin modifying protein 4A 
CHMP5                 0.114   chromatin modifying protein 5 
CHMP6                 0.101   chromatin modifying protein 6 
CHMP7                 0.094   CHMP family, member 7 
EIF5B                 0.070   eukaryotic translation initiation factor 5B 
CHMP2B                0.056   chromatin modifying protein 2B 
RDX                   0.041   radixin 
MSN                   0.039   moesin 
MYH6                  0.039   myosin heavy chain 6 
GOLGA1                0.039   golgin 97 
C6orf174              0.036   hypothetical protein LOC387104 
MYH7                  0.036   myosin, heavy chain 7, cardiac muscle, beta 
CLIP1                 0.036   restin isoform b 
CLIP1                 0.036   restin isoform a 
MYH13                 0.036   myosin, heavy polypeptide 13, skeletal muscle [Homo...
SMC2                  0.036   structural maintenance of chromosomes 2 
SMC2                  0.036   structural maintenance of chromosomes 2 
SMC2                  0.036   structural maintenance of chromosomes 2 
VPS24                 0.034   vacuolar protein sorting 24 isoform 1 
ZNF853                0.034   zinc finger protein 853 
MYH9                  0.034   myosin, heavy polypeptide 9, non-muscle 
ANKRD12               0.034   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.034   ankyrin repeat domain 12 isoform 1 
KIF7                  0.034   kinesin family member 7 
GOLGA4                0.031   golgi autoantigen, golgin subfamily a, 4 
LOC283685             0.031   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TPR                   0.029   nuclear pore complex-associated protein TPR 
UTP14C                0.029   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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