BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|100913028 calcitonin gene-related peptide-receptor component protein isoform c [Homo sapiens] (71 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|100913028 calcitonin gene-related peptide-receptor component ... 138 8e-34 gi|227495694 calcitonin gene-related peptide-receptor component ... 133 3e-32 gi|100913026 calcitonin gene-related peptide-receptor component ... 133 3e-32 gi|7656977 calcitonin gene-related peptide-receptor component pr... 133 3e-32 gi|41281453 serine/threonine kinase 2 [Homo sapiens] 31 0.24 gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo s... 30 0.31 gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo s... 30 0.31 gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 29 0.70 gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 29 0.70 gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 29 0.70 gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 29 0.70 gi|4502399 filensin isoform 1 [Homo sapiens] 29 0.91 gi|239787151 filensin isoform 2 [Homo sapiens] 29 0.91 gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 29 0.91 gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 29 0.91 gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 29 0.91 gi|239755742 PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) ... 28 1.2 gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 28 1.2 gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 28 1.2 gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 28 1.2 gi|217330634 serine/threonine kinase 36 [Homo sapiens] 28 1.2 gi|44662819 ubiquitin-like 4B [Homo sapiens] 28 1.2 gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 28 1.6 gi|110349719 titin isoform N2-A [Homo sapiens] 28 1.6 gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 28 1.6 gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 28 1.6 gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 28 1.6 gi|154240677 hypothetical protein LOC399949 isoform 2 [Homo sapi... 28 2.0 gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens] 27 2.6 gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens] 27 2.6 >gi|100913028 calcitonin gene-related peptide-receptor component protein isoform c [Homo sapiens] Length = 71 Score = 138 bits (348), Expect = 8e-34 Identities = 71/71 (100%), Positives = 71/71 (100%) Query: 1 MEVAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTN 60 MEVAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTN Sbjct: 1 MEVAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTN 60 Query: 61 SNVAMDEEDPA 71 SNVAMDEEDPA Sbjct: 61 SNVAMDEEDPA 71 >gi|227495694 calcitonin gene-related peptide-receptor component protein isoform d [Homo sapiens] Length = 141 Score = 133 bits (334), Expect = 3e-32 Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 4 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 63 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV Sbjct: 74 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 133 Query: 64 AMDEEDPA 71 AMDEEDPA Sbjct: 134 AMDEEDPA 141 >gi|100913026 calcitonin gene-related peptide-receptor component protein isoform b [Homo sapiens] Length = 115 Score = 133 bits (334), Expect = 3e-32 Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 4 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 63 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV Sbjct: 48 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 107 Query: 64 AMDEEDPA 71 AMDEEDPA Sbjct: 108 AMDEEDPA 115 >gi|7656977 calcitonin gene-related peptide-receptor component protein isoform a [Homo sapiens] Length = 148 Score = 133 bits (334), Expect = 3e-32 Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 4 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 63 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV Sbjct: 81 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 140 Query: 64 AMDEEDPA 71 AMDEEDPA Sbjct: 141 AMDEEDPA 148 >gi|41281453 serine/threonine kinase 2 [Homo sapiens] Length = 1235 Score = 30.8 bits (68), Expect = 0.24 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 8 QLLNHRPVTAVEIQLMVEESEERLTEEQIEAL--LHTVTSILPAEPEAEQKKNTNSNVAM 65 ++LN +P T E + VE+ E +T+ Q+EA+ LH T+++ ++ K N Sbjct: 379 KILNEKPTTD-EPEKAVEDINEHITDAQLEAMTELHDRTAVIKENEREKRPKLENLPDTE 437 Query: 66 DEE 68 D+E Sbjct: 438 DQE 440 >gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo sapiens] Length = 471 Score = 30.4 bits (67), Expect = 0.31 Identities = 14/46 (30%), Positives = 29/46 (63%) Query: 20 IQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAM 65 ++L+VEES E + E+ IE ++ VT + E+E +++ S +++ Sbjct: 186 LELLVEESPEEVVEDVIEDIVEEVTEEVEGSLESEVEESGESELSV 231 >gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo sapiens] Length = 656 Score = 30.4 bits (67), Expect = 0.31 Identities = 14/46 (30%), Positives = 29/46 (63%) Query: 20 IQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAM 65 ++L+VEES E + E+ IE ++ VT + E+E +++ S +++ Sbjct: 371 LELLVEESPEEVVEDVIEDIVEEVTEEVEGSLESEVEESGESELSV 416 >gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] Length = 1123 Score = 29.3 bits (64), Expect = 0.70 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 25 EESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 69 EE+EE LTE+Q E LL +P E E + DEED Sbjct: 551 EETEEELTEQQ-EVLLGEGALTMPREGSTESESTQEDLEEEDEED 594 >gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] Length = 1122 Score = 29.3 bits (64), Expect = 0.70 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 25 EESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 69 EE+EE LTE+Q E LL +P E E + DEED Sbjct: 550 EETEEELTEQQ-EVLLGEGALTMPREGSTESESTQEDLEEEDEED 593 >gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo sapiens] Length = 906 Score = 29.3 bits (64), Expect = 0.70 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 5 EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNS 61 E+LQ L HR +QL R EE+ E LL +L PEAE+ + S Sbjct: 142 ERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPEAERPEQLES 192 >gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapiens] Length = 693 Score = 29.3 bits (64), Expect = 0.70 Identities = 12/32 (37%), Positives = 22/32 (68%) Query: 10 LNHRPVTAVEIQLMVEESEERLTEEQIEALLH 41 LN+ +A++++ V+E +E+L EE +EA H Sbjct: 452 LNNEKKSALQLEQQVKELQEKLDEEHLEAASH 483 >gi|4502399 filensin isoform 1 [Homo sapiens] Length = 665 Score = 28.9 bits (63), Expect = 0.91 Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 19 EIQLMVEESEERLTEEQIEALLHTVTSILPAE 50 E QL+++E ERL +E EALLH + L A+ Sbjct: 132 ECQLLLKEMLERLNKEADEALLHNLRLQLEAQ 163 >gi|239787151 filensin isoform 2 [Homo sapiens] Length = 540 Score = 28.9 bits (63), Expect = 0.91 Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 19 EIQLMVEESEERLTEEQIEALLHTVTSILPAE 50 E QL+++E ERL +E EALLH + L A+ Sbjct: 7 ECQLLLKEMLERLNKEADEALLHNLRLQLEAQ 38 >gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 isoform 2 [Homo sapiens] Length = 856 Score = 28.9 bits (63), Expect = 0.91 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 5 EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNS 61 E+LQ L HR +QL R EE+ E LL +L PEAE+ + S Sbjct: 142 ERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPEAERLEQLES 192 >gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 isoform 1 [Homo sapiens] Length = 906 Score = 28.9 bits (63), Expect = 0.91 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 5 EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNS 61 E+LQ L HR +QL R EE+ E LL +L PEAE+ + S Sbjct: 142 ERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPEAERLEQLES 192 >gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 isoform 3 [Homo sapiens] Length = 970 Score = 28.9 bits (63), Expect = 0.91 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 5 EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNS 61 E+LQ L HR +QL R EE+ E LL +L PEAE+ + S Sbjct: 142 ERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPEAERLEQLES 192 >gi|239755742 PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (CHL1-like helicase homolog, S. cerevisiae) [Homo sapiens] Length = 282 Score = 28.5 bits (62), Expect = 1.2 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 5 EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAE 54 E+LQ L HR +QL R EE+ E LL +L PEAE Sbjct: 136 ERLQQLQHR------VQLKYAAKRLRQEEEETENLLRLSREMLETGPEAE 179 >gi|19923399 Ras-GTPase activating protein SH3 domain-binding protein 2 isoform a [Homo sapiens] Length = 482 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 3 VAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEP 51 + E L+ +H P E + EE + ++ E+ +E L T+ PAEP Sbjct: 185 IEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEP 233 >gi|45359849 Ras-GTPase activating protein SH3 domain-binding protein 2 isoform a [Homo sapiens] Length = 482 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 3 VAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEP 51 + E L+ +H P E + EE + ++ E+ +E L T+ PAEP Sbjct: 185 IEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEP 233 >gi|45359846 Ras-GTPase activating protein SH3 domain-binding protein 2 isoform b [Homo sapiens] Length = 449 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 3 VAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEP 51 + E L+ +H P E + EE + ++ E+ +E L T+ PAEP Sbjct: 185 IEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEP 233 >gi|217330634 serine/threonine kinase 36 [Homo sapiens] Length = 1315 Score = 28.5 bits (62), Expect = 1.2 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 19 EIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 69 E+Q++ +E RL + ++ + T AE EA QKK+ N+ A+++ED Sbjct: 280 ELQVLKDEQAHRLAPKGNQSRILTQAYKRMAE-EAMQKKHQNTGPALEQED 329 >gi|44662819 ubiquitin-like 4B [Homo sapiens] Length = 174 Score = 28.5 bits (62), Expect = 1.2 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Query: 20 IQLMVEESEERLTEEQIEALLHTVTSILPAEP--------EAEQKKNTNSNVAMDEEDPA 71 +QL+ +E EERL + +E L +L EP E E K S+ M+E++ A Sbjct: 111 LQLLRQEHEERLQKISLEHLEQLAQYLLAEEPHVEPAGERELEAKARPQSSCDMEEKEEA 170 >gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sapiens] Length = 693 Score = 28.1 bits (61), Expect = 1.6 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 10 LNHRPVTAVEIQLMVEESEERLTEEQIEAL------LHTVTSILPAEPEAEQKKNTNSNV 63 LN+ +A++++ V+E +E+L EE +EA L T S++ E + ++ +S Sbjct: 452 LNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQLETQLSLVALPGEGDGGQHLDSE- 510 Query: 64 AMDEEDP 70 +EE P Sbjct: 511 --EEEAP 515 >gi|110349719 titin isoform N2-A [Homo sapiens] Length = 33423 Score = 28.1 bits (61), Expect = 1.6 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 2 EVAEKLQLLNHRPVTAVEIQL-MVEESEERLTEEQIEALLHTVTSILPAEPEAEQKK 57 EVA + +++ H VE + + E EE +TEE++ ++ +P +P E+KK Sbjct: 9907 EVAFEEEVVTHVEEYLVEEEEEYIHEEEEFITEEEVVPVIPVKVPEVPRKPVPEEKK 9963 >gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C isoform 1 [Homo sapiens] Length = 693 Score = 28.1 bits (61), Expect = 1.6 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 10 LNHRPVTAVEIQLMVEESEERLTEEQIEAL------LHTVTSILPAEPEAEQKKNTNSNV 63 LN+ +A++++ V+E +E+L EE +EA L T S++ E + ++ +S Sbjct: 452 LNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQLETQLSLVALPGEGDGGQHLDSE- 510 Query: 64 AMDEEDP 70 +EE P Sbjct: 511 --EEEAP 515 >gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapiens] Length = 693 Score = 28.1 bits (61), Expect = 1.6 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 10 LNHRPVTAVEIQLMVEESEERLTEEQIEAL------LHTVTSILPAEPEAEQKKNTNSNV 63 LN+ +A++++ V+E +E+L EE +EA L T S++ E + ++ +S Sbjct: 452 LNNEKKSALQLEQQVKELQEKLDEEHLEAASQQNQQLETQLSLVALPGEGDGGQHLDSE- 510 Query: 64 AMDEEDP 70 +EE P Sbjct: 511 --EEEAP 515 >gi|58082089 hypothetical protein LOC161394 [Homo sapiens] Length = 674 Score = 28.1 bits (61), Expect = 1.6 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 14 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEE 68 P EI+L E E R T E E +L + P PE +K N N EE Sbjct: 326 PEPLEEIKLEFPEEESRKTNE--ETILEQSEMMKPESPEEIRKSNEKKNPQPPEE 378 >gi|154240677 hypothetical protein LOC399949 isoform 2 [Homo sapiens] Length = 169 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Query: 2 EVAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNS 61 E EK++ L +QL+ ++ EER+++E I LP +P+A++ K Sbjct: 103 ESEEKVKYLQKAKTREEILQLLRKQREERISKELIS---------LPYKPKAKEHKAKKV 153 Query: 62 NVAMDEED 69 D+ED Sbjct: 154 VSESDKED 161 >gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens] Length = 284 Score = 27.3 bits (59), Expect = 2.6 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 2 EVAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKN 58 EVA KL ++ + E + + E + R EEQ+ + T+ +++ AE + QK++ Sbjct: 164 EVARKLVIIES-DLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKED 219 >gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens] Length = 284 Score = 27.3 bits (59), Expect = 2.6 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 2 EVAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKN 58 EVA KL ++ + E + + E + R EEQ+ + T+ +++ AE + QK++ Sbjct: 164 EVARKLVIIES-DLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKED 219 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.303 0.120 0.302 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,512,577 Number of Sequences: 37866 Number of extensions: 87319 Number of successful extensions: 403 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 23 Number of HSP's that attempted gapping in prelim test: 379 Number of HSP's gapped (non-prelim): 48 length of query: 71 length of database: 18,247,518 effective HSP length: 44 effective length of query: 27 effective length of database: 16,581,414 effective search space: 447698178 effective search space used: 447698178 T: 11 A: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.