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Search of human proteins with 100913026
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|100913026 calcitonin gene-related peptide-receptor component
protein isoform b [Homo sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|100913026 calcitonin gene-related peptide-receptor component ... 225 7e-60
gi|227495694 calcitonin gene-related peptide-receptor component ... 223 3e-59
gi|7656977 calcitonin gene-related peptide-receptor component pr... 208 8e-55
gi|100913028 calcitonin gene-related peptide-receptor component ... 133 3e-32
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.083
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.083
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 32 0.083
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 32 0.11
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho... 32 0.14
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 32 0.14
gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo sapi... 32 0.14
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens] 31 0.18
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens] 31 0.18
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo... 31 0.18
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 31 0.18
gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo s... 31 0.18
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.18
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.18
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso... 31 0.18
gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens] 31 0.24
gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens] 31 0.24
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 31 0.24
gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo sap... 30 0.31
gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C... 30 0.31
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 30 0.31
gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo s... 30 0.31
gi|39752671 synaptotagmin X [Homo sapiens] 30 0.31
gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo s... 30 0.31
gi|169206326 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239755742 PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) ... 30 0.54
>gi|100913026 calcitonin gene-related peptide-receptor component
protein isoform b [Homo sapiens]
Length = 115
Score = 225 bits (573), Expect = 7e-60
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT 60
MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT
Sbjct: 1 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVT 60
Query: 61 AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 115
AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 61 AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 115
>gi|227495694 calcitonin gene-related peptide-receptor component
protein isoform d [Homo sapiens]
Length = 141
Score = 223 bits (568), Expect = 3e-59
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 2 EVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTA 61
EVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTA
Sbjct: 28 EVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTA 87
Query: 62 VEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 115
VEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 88 VEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 141
>gi|7656977 calcitonin gene-related peptide-receptor component
protein isoform a [Homo sapiens]
Length = 148
Score = 208 bits (529), Expect = 8e-55
Identities = 115/148 (77%), Positives = 115/148 (77%), Gaps = 33/148 (22%)
Query: 1 MEVKDANSALLSNYE---------------------------------TLKYISKTPCRH 27
MEVKDANSALLSNYE TLKYISKTPCRH
Sbjct: 1 MEVKDANSALLSNYEVFQLLTDLKEQRKESGKNKHSSGQQNLNTITYETLKYISKTPCRH 60
Query: 28 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 87
QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV
Sbjct: 61 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTV 120
Query: 88 TSILPAEPEAEQKKNTNSNVAMDEEDPA 115
TSILPAEPEAEQKKNTNSNVAMDEEDPA
Sbjct: 121 TSILPAEPEAEQKKNTNSNVAMDEEDPA 148
>gi|100913028 calcitonin gene-related peptide-receptor component
protein isoform c [Homo sapiens]
Length = 71
Score = 133 bits (334), Expect = 3e-32
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 48 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 107
AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV
Sbjct: 4 AEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNV 63
Query: 108 AMDEEDPA 115
AMDEEDPA
Sbjct: 64 AMDEEDPA 71
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 26 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 81
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 82 ALLHTVTSILPAEP 95
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 26 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 81
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 82 ALLHTVTSILPAEP 95
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 26 RHQSPEIVREFLTA--LKSHKLTKA--EKLQLLNHRPVTAVEIQLMVEESEERLTEEQIE 81
R SPE V+E + ++H +T E L+ +H P E + EE + ++ E+ +E
Sbjct: 160 RQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLE 219
Query: 82 ALLHTVTSILPAEP 95
L T+ PAEP
Sbjct: 220 ELEEKSTTPPPAEP 233
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 41 KSHKLTKAEKL--QLLNHRPVTAVEIQLMVEESEERLTEEQIEAL--LHTVTSILPAEPE 96
K+ + +KL ++LN +P T E + VE+ E +T+ Q+EA+ LH T+++
Sbjct: 366 KTERSNSEDKLNSKILNEKPTTD-EPEKAVEDINEHITDAQLEAMTELHDRTAVIKENER 424
Query: 97 AEQKKNTNSNVAMDEE 112
++ K N D+E
Sbjct: 425 EKRPKLENLPDTEDQE 440
>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
sapiens]
Length = 906
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 37 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 96
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 97 AEQKKNTNS 105
AE+ + S
Sbjct: 184 AERPEQLES 192
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 33 VRE--FLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEER----LTEEQIEALLHT 86
VRE FLT L S K+ QL N + +T + + MV+ +EE +T EQI L+++
Sbjct: 847 VRESHFLTKLHSLKMLSITPSQLENGKKITTYDYRFMVKLAEETDGIIVTNEQIHILMNS 906
Query: 87 VTSIL 91
++
Sbjct: 907 SKKLM 911
>gi|146133848 golgi autoantigen, golgin subfamily a, 6 [Homo
sapiens]
Length = 693
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 35 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLH 85
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA H
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASH 483
>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
Length = 1173
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 40 LKSHKL---TKAEKLQLLNHRPVT-AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEP 95
LKS KL T ++ Q L + V + E+Q + E ++ +EQ+ L T+ +
Sbjct: 731 LKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKD--AKEQVSPLETTLEKFQQEKE 788
Query: 96 EAEQKKNTNSNVAMDE 111
E KKNT++ +A D+
Sbjct: 789 ELINKKNTSNKIAQDK 804
>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
Length = 1312
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 40 LKSHKL---TKAEKLQLLNHRPVT-AVEIQLMVEESEERLTEEQIEALLHTVTSILPAEP 95
LKS KL T ++ Q L + V + E+Q + E ++ +EQ+ L T+ +
Sbjct: 870 LKSEKLQISTNLQRRQQLEEQTVELSTEVQSLYREIKD--AKEQVSPLETTLEKFQQEKE 927
Query: 96 EAEQKKNTNSNVAMDE 111
E KKNT++ +A D+
Sbjct: 928 ELINKKNTSNKIAQDK 943
>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
sapiens]
Length = 1977
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 1 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH---KLTKAEKLQLLNHR 57
ME+K+ + S+ ++ I +TPC Q E+ E + ++ H T+++ L L
Sbjct: 653 MEIKEHHPEEGSSGSEVEEIPETPCESQGEELKEENMESVPLHLSLTETQSQGLCLQKEM 712
Query: 58 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 115
P + VE S + Q A+L E E +S V +D ++P+
Sbjct: 713 PKKECSEAMEVETSVISIDSPQKLAILDQELEHKEQEAWEEATSEDSSVVIVDVKEPS 770
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 1 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH---KLTKAEKLQLLNHR 57
ME+K+ + S+ ++ I +TPC Q E+ E + ++ H T+++ L L
Sbjct: 653 MEIKEHHPEEGSSGSEVEEIPETPCESQGEELKEENMESVPLHLSLTETQSQGLCLQKEM 712
Query: 58 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 115
P + VE S + Q A+L E E +S V +D ++P+
Sbjct: 713 PKKECSEAMEVETSVISIDSPQKLAILDQELEHKEQEAWEEATSEDSSVVIVDVKEPS 770
>gi|5032189 tumor protein p53 binding protein 1 isoform 3 [Homo
sapiens]
Length = 1972
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 1 MEVKDANSALLSNYETLKYISKTPCRHQSPEIVREFLTALKSH---KLTKAEKLQLLNHR 57
ME+K+ + S+ ++ I +TPC Q E+ E + ++ H T+++ L L
Sbjct: 648 MEIKEHHPEEGSSGSEVEEIPETPCESQGEELKEENMESVPLHLSLTETQSQGLCLQKEM 707
Query: 58 PVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEEDPA 115
P + VE S + Q A+L E E +S V +D ++P+
Sbjct: 708 PKKECSEAMEVETSVISIDSPQKLAILDQELEHKEQEAWEEATSEDSSVVIVDVKEPS 765
>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 2 [Homo sapiens]
Length = 856
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 37 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 96
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 97 AEQKKNTNS 105
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 1 [Homo sapiens]
Length = 906
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 37 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 96
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 97 AEQKKNTNS 105
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
isoform 3 [Homo sapiens]
Length = 970
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 37 LTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSILPAEPE 96
L A ++ + + E+LQ L HR +QL R EE+ E LL +L PE
Sbjct: 130 LKAEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEERENLLRLSREMLETGPE 183
Query: 97 AEQKKNTNS 105
AE+ + S
Sbjct: 184 AERLEQLES 192
>gi|62750349 histone deacetylase 5 isoform 3 [Homo sapiens]
Length = 1123
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 28 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM------VEESEERLTEEQIE 81
QSP+ +++ + + + + +K Q L + +L EE+EE LTE+Q E
Sbjct: 504 QSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ-E 562
Query: 82 ALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 113
LL +P E E + DEED
Sbjct: 563 VLLGEGALTMPREGSTESESTQEDLEEEDEED 594
>gi|62750347 histone deacetylase 5 isoform 1 [Homo sapiens]
Length = 1122
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 28 QSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLM------VEESEERLTEEQIE 81
QSP+ +++ + + + + +K Q L + +L EE+EE LTE+Q E
Sbjct: 503 QSPQALQQLVMQQQHQQFLEKQKQQQLQLGKILTKTGELPRQPTTHPEETEEELTEQQ-E 561
Query: 82 ALLHTVTSILPAEPEAEQKKNTNSNVAMDEED 113
LL +P E E + DEED
Sbjct: 562 VLLGEGALTMPREGSTESESTQEDLEEEDEED 593
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 0.24
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 30 PEIVREFLTALKSHKLTKAEKLQLLNHRPVTAV---------EIQLMVEESEERLTEEQI 80
PE ++ T K +L + K +H+P + EI+L E E R T E
Sbjct: 289 PEEMQRKATEEKGTELPERTKPDFPDHKPRKSTDENVPEPLEEIKLEFPEEESRKTNE-- 346
Query: 81 EALLHTVTSILPAEPEAEQKKNTNSNVAMDEE 112
E +L + P PE +K N N EE
Sbjct: 347 ETILEQSEMMKPESPEEIRKSNEKKNPQPPEE 378
>gi|223634475 golgi autoantigen, golgin subfamily a, 6D [Homo
sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 35 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 83
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQ 487
Query: 84 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 114
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
>gi|51472437 PREDICTED: golgi autoantigen, golgin subfamily a, 6C
isoform 1 [Homo sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 35 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 83
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQRNQQ 487
Query: 84 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 114
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 30.4 bits (67), Expect = 0.31
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 35 EFLTALKSHKLTK--AE---KLQLLNHRPVTAVEIQLMVEESEERLTEEQIEAL------ 83
E L ++HKL K AE + LN+ +A++++ V+E +E+L EE +EA
Sbjct: 428 ERLALSQNHKLDKQLAEPQCSFEDLNNEKKSALQLEQQVKELQEKLDEEHLEAASQQNQQ 487
Query: 84 LHTVTSILPAEPEAEQKKNTNSNVAMDEEDP 114
L T S++ E + ++ +S +EE P
Sbjct: 488 LETQLSLVALPGEGDGGQHLDSE---EEEAP 515
>gi|148664188 leucine rich repeat containing 43 isoform 2 [Homo
sapiens]
Length = 471
Score = 30.4 bits (67), Expect = 0.31
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 64 IQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAM 109
++L+VEES E + E+ IE ++ VT + E+E +++ S +++
Sbjct: 186 LELLVEESPEEVVEDVIEDIVEEVTEEVEGSLESEVEESGESELSV 231
>gi|39752671 synaptotagmin X [Homo sapiens]
Length = 523
Score = 30.4 bits (67), Expect = 0.31
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 27 HQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTA---------VEIQLMVEESEERLTE 77
H SP+I E TALK H L K ++Q P ++ + Q+ V + +
Sbjct: 135 HTSPDIPAEVQTALKEH-LIKHARVQRQITEPTSSTRHSSFRRHLPRQMQVSSVDFSMGT 193
Query: 78 EQIEALLHTVTSILPAEPEAEQKKNTNSNVAMDEE 112
E + T TSI +PE ++K+ +S +E+
Sbjct: 194 EPVLQRGETTTSIGRIKPELYKQKSVDSEGNQNED 228
>gi|148664213 leucine rich repeat containing 43 isoform 1 [Homo
sapiens]
Length = 656
Score = 30.4 bits (67), Expect = 0.31
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 64 IQLMVEESEERLTEEQIEALLHTVTSILPAEPEAEQKKNTNSNVAM 109
++L+VEES E + E+ IE ++ VT + E+E +++ S +++
Sbjct: 371 LELLVEESPEEVVEDVIEDIVEEVTEEVEGSLESEVEESGESELSV 416
>gi|169206326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 189
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 15 ETLKYISK-----TPCRHQSPEIVREFLTALKSHKLTKAEKLQLLNHRPVTAVEIQLMVE 69
+ L Y++K C+ S ++ R L + T+A +++ R VTAVEIQ +E
Sbjct: 72 QELMYLAKGQQRLEACQQLSEKVTRSNLEMTTAPVFTRANVFEIMQFRHVTAVEIQHKLE 131
>gi|239755742 PREDICTED: similar to DEAD/H (Asp-Glu-Ala-Asp/His) box
polypeptide 11 (CHL1-like helicase homolog, S.
cerevisiae) [Homo sapiens]
Length = 282
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 34 REFLTALK---SHKLTKAEKLQLLNHRPVTAVEIQLMVEESEERLTEEQIEALLHTVTSI 90
R+ + LK + + + E+LQ L HR +QL R EE+ E LL +
Sbjct: 118 RDLVNRLKVEQARRKQREERLQQLQHR------VQLKYAAKRLRQEEEETENLLRLSREM 171
Query: 91 LPAEPEAE 98
L PEAE
Sbjct: 172 LETGPEAE 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.122 0.319
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,060,014
Number of Sequences: 37866
Number of extensions: 149416
Number of successful extensions: 680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 94
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.