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Search of human proteins with 186928850
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|186928850 mitochondrial ribosomal protein S27 [Homo sapiens]
(414 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|186928850 mitochondrial ribosomal protein S27 [Homo sapiens] 822 0.0
gi|98986331 pentatricopeptide repeat domain 2 [Homo sapiens] 57 2e-08
gi|91208420 bassoon protein [Homo sapiens] 44 4e-04
gi|93102364 SWAP-70 protein [Homo sapiens] 41 0.002
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 39 0.009
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 39 0.009
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 39 0.009
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 39 0.009
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 39 0.009
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 39 0.009
gi|41322912 plectin 1 isoform 2 [Homo sapiens] 39 0.009
gi|47607492 plectin 1 isoform 1 [Homo sapiens] 39 0.009
gi|118498356 kinectin 1 isoform a [Homo sapiens] 38 0.015
gi|33620775 kinectin 1 isoform a [Homo sapiens] 38 0.015
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 38 0.019
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 35 0.096
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 35 0.096
gi|4758646 kinesin family member 3B [Homo sapiens] 35 0.12
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens] 35 0.12
gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens] 35 0.12
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens] 35 0.12
gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens] 35 0.12
gi|221139761 zinc finger protein 853 [Homo sapiens] 34 0.21
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 34 0.21
gi|17017963 forkhead box P2 isoform I [Homo sapiens] 34 0.28
gi|22538413 forkhead box P2 isoform III [Homo sapiens] 34 0.28
gi|149999352 forkhead box P2 isoform II [Homo sapiens] 34 0.28
gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens] 34 0.28
gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens] 34 0.28
gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens] 34 0.28
>gi|186928850 mitochondrial ribosomal protein S27 [Homo sapiens]
Length = 414
Score = 822 bits (2122), Expect = 0.0
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT 60
MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT
Sbjct: 1 MAASIVRRGMLLARQVVLPQLSPAGKRYLLSSAYVDSHKWEAREKEHYCLADLASLMDKT 60
Query: 61 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD 120
FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD
Sbjct: 61 FERKLPVSSLTISRLIDNISSREEIDHAEYYLYKFRHSPNCWYLRNWTIHTWIRQCLKYD 120
Query: 121 AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL 180
AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL
Sbjct: 121 AQDKALYTLVNKVQYGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQL 180
Query: 181 LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL 240
LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL
Sbjct: 181 LSLYVLFHCLAKKTDFSWEEERNFGASLLLPGLKQKNSVGFSSQLYGYALLGKVELQQGL 240
Query: 241 RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQ 300
RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQ
Sbjct: 241 RAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQ 300
Query: 301 SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV 360
SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV
Sbjct: 301 SQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLV 360
Query: 361 KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA 414
KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA
Sbjct: 361 KEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAAKASA 414
>gi|98986331 pentatricopeptide repeat domain 2 [Homo sapiens]
Length = 388
Score = 57.4 bits (137), Expect = 2e-08
Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 16/173 (9%)
Query: 26 KRYLLSSAYVDSHKWEAREKEHYC-LADLASLMDKTFERKLPVSSLTIS----RLIDNIS 80
KRYLL+ V +++ ++ C L+ + ++KL + L + L+
Sbjct: 44 KRYLLTDNVVKLKEFQQKKVAVACNLSGTKETYFRNLKKKLTQNKLILKGELITLLHLCE 103
Query: 81 SREEIDHAEYYLYKFRHSPNCWYLRNWTIHTW------IRQCLKYDAQDKALYTLVNKVQ 134
SR+ ++ A+ +Y++ H+ N +N+T+ + +R C + D ++ A+ + ++
Sbjct: 104 SRDHVELAKNVIYRY-HAEN----KNFTLGEYKFGPLFVRLCYELDLEESAVELMKDQHL 158
Query: 135 YGIFPDNFTFNLLMDSFIKKENYKDALSVVFEVMMQEAFEVPSTQLLSLYVLF 187
G F D+ +FN+LMD K YK AL V+ E+ Q+ T +L+ + +
Sbjct: 159 RGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDVKFTKDTYVLAFAICY 211
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 43.5 bits (101), Expect = 4e-04
Identities = 33/130 (25%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 284 GAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLER----FKALHS 339
GA+ + + AS+E+ Q + Q + E++++E+ Q +L + LER +
Sbjct: 2347 GALSRPGFEKEEASQEERQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHRE 2406
Query: 340 KLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQ 399
+ Q L + E + L ++ +++++ +A+ A + L Q L L Q+ Q +QQ ++Q
Sbjct: 2407 EEQLLVQRELQELQTIKHHVLQQQQEERQAQ-FALQREQLAQQRLQLEQIQQLQQQLQQQ 2465
Query: 400 AKQEYQAQKA 409
+++ Q QKA
Sbjct: 2466 LEEQKQRQKA 2475
>gi|93102364 SWAP-70 protein [Homo sapiens]
Length = 585
Score = 40.8 bits (94), Expect = 0.002
Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 28/206 (13%)
Query: 233 KVELQQGLRAVYHNMPLIWKPGYLD---RALQVMEKVAASPEDIKLCREALDV------- 282
K E Q + + H + L P + + R ++ +K A E+++ + L
Sbjct: 294 KQEWIQAIHSTIHLLKLGSPPPHKEARQRRKELRKKQLAEQEELERQMKELQAANESKQQ 353
Query: 283 -LGAVLKALTSADGASEEQSQNDEDNQGS-----------EKLVEQLDIEETEQ--SKLP 328
L AV K L A + E+ + Q EKL+ Q E+ Q S+L
Sbjct: 354 ELEAVRKKLEEAASRAAEEEKKRLQTQVELQARFSTELEREKLIRQQMEEQVAQKSSELE 413
Query: 329 QYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQ 388
QYL+R + L L + + + + KL E+ ++ L++WHL+ Q
Sbjct: 414 QYLQRVRELEDMYLKLQEALEDERQARQDEETVRKLQARLLEEESSKRAELEKWHLEQQQ 473
Query: 389 LIQREQQQREQAKQEYQAQKAAKASA 414
I Q E KQE + Q+ K A
Sbjct: 474 AI----QTTEAEKQELENQRVLKEQA 495
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2388 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2444
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2445 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2499
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2500 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2555
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 1965 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 2021
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 2022 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2077
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2078 QLRGEAEAARRAAEEA 2093
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2392 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2448
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2449 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2503
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2504 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2559
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 1969 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 2025
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 2026 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2081
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2082 QLRGEAEAARRAAEEA 2097
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2388 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2444
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2445 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2499
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2500 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2555
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 1965 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 2021
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 2022 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2077
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2078 QLRGEAEAARRAAEEA 2093
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2356 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2412
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2413 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2467
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2468 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2523
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 1933 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 1989
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 1990 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2045
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2046 QLRGEAEAARRAAEEA 2061
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2525 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2581
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2582 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2636
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2637 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2692
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 2102 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 2158
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 2159 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2214
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2215 QLRGEAEAARRAAEEA 2230
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2366 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2422
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2423 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2477
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2478 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2533
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 1943 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 1999
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 2000 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2055
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2056 QLRGEAEAARRAAEEA 2071
>gi|41322912 plectin 1 isoform 2 [Homo sapiens]
Length = 4533
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2374 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2430
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2431 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2485
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2486 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2541
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 1951 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 2007
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 2008 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2063
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2064 QLRGEAEAARRAAEEA 2079
>gi|47607492 plectin 1 isoform 1 [Homo sapiens]
Length = 4574
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 27/176 (15%)
Query: 258 RALQVMEKVAASPEDIKLCREALDVLG--------AVLKALTSADGASEEQSQNDEDNQG 309
R ++ A + ED + R+ + +G A + +T ++ Q+D D
Sbjct: 2415 RVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVTLVQTLEIQRQQSDHD--- 2471
Query: 310 SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCEA 369
+E+L E + E E+ KL Q K L K + + ++ E LL T L + LS E
Sbjct: 2472 AERLREAIAELEREKEKLQQ---EAKLLQLKSEEMQTVQQEQLLQETQALQQSFLS--EK 2526
Query: 370 EDIATYEQNLQQWHLDLVQLIQ---------REQQQRE--QAKQEYQAQKAAKASA 414
+ + E+ ++Q L QL Q RE+QQR+ Q +QE Q A+ A
Sbjct: 2527 DSLLQRERFIEQEKAKLEQLFQDEVAKAQQLREEQQRQQQQMEQERQRLVASMEEA 2582
Score = 33.5 bits (75), Expect = 0.36
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 285 AVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQAL 344
A L+A A+EE+ + E E++ + L EE + LE + L +K++
Sbjct: 1992 AELEAARQRQLAAEEERRRRE---AEERVQKSLAAEEEAARQRKAALEEVERLKAKVEEA 2048
Query: 345 GKI------ESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQRE 398
++ ES L L + +++L +AE+ A + +QQ +L Q +Q+EQ +
Sbjct: 2049 RRLRERAEQESARQLQLAQEAAQKRL---QAEEKA-HAFAVQQKEQELQQTLQQEQSVLD 2104
Query: 399 QAKQEYQAQKAAKASA 414
Q + E +A + A A
Sbjct: 2105 QLRGEAEAARRAAEEA 2120
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 38.1 bits (87), Expect = 0.015
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 277 REALDVLGAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKA 336
RE D+L + K L D SE QN+E N +L E L TEQ+ ER K
Sbjct: 1228 RELKDLLTELQKKLD--DSYSEAVRQNEELNLLKAQLNETLTKLRTEQN------ERQKV 1279
Query: 337 ---LHSKLQALGKIESEGLLSL--TTQLVKEKLST-CEAEDIATYEQNLQQWHLDLVQLI 390
LH Q+L I+S+ + + TT + +S E+ + T +L Q L QL+
Sbjct: 1280 AGDLHKAQQSLELIQSKIVKAAGDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQQLL 1339
Query: 391 QREQQQREQAKQEYQ 405
Q QQ + K+ YQ
Sbjct: 1340 QAVNQQLTKEKEHYQ 1354
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 38.1 bits (87), Expect = 0.015
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 277 REALDVLGAVLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKA 336
RE D+L + K L D SE QN+E N +L E L TEQ+ ER K
Sbjct: 1228 RELKDLLTELQKKLD--DSYSEAVRQNEELNLLKAQLNETLTKLRTEQN------ERQKV 1279
Query: 337 ---LHSKLQALGKIESEGLLSL--TTQLVKEKLST-CEAEDIATYEQNLQQWHLDLVQLI 390
LH Q+L I+S+ + + TT + +S E+ + T +L Q L QL+
Sbjct: 1280 AGDLHKAQQSLELIQSKIVKAAGDTTVIENSDVSPETESSEKETMSVSLNQTVTQLQQLL 1339
Query: 391 QREQQQREQAKQEYQ 405
Q QQ + K+ YQ
Sbjct: 1340 QAVNQQLTKEKEHYQ 1354
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 37.7 bits (86), Expect = 0.019
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 257 DRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGAS--------EEQSQNDEDNQ 308
+ AL++ +K+ D++L LG + T A A+ EEQ+ DE+ +
Sbjct: 1658 NEALRLKKKMEGDLNDLEL------QLGHATRQATEAQAATRLMQAQLKEEQAGRDEEQR 1711
Query: 309 GSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEKLSTCE 368
+ +L EQ E S L LE +A + + ++ + LL T E+L+
Sbjct: 1712 LAAELHEQAQALERRASLLAAELEELRAALEQGERSRRLAEQELLEAT-----ERLNLLH 1766
Query: 369 AEDIATYEQNLQQWHLDLVQLI-QREQQQREQAKQEYQAQKAAKASA 414
+++ Q ++ DL QL + E+ +E+ + E +A+KA +A
Sbjct: 1767 SQNTGLLNQK-KKLEADLAQLSGEVEEAAQERREAEEKAKKAITDAA 1812
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 35.4 bits (80), Expect = 0.096
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 296 ASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSL 355
A ++Q Q + Q + ++Q + +Q + Q+ + A+ + QA+ + + +
Sbjct: 159 ALQQQQQQQQFQQQQQAALQQ----QQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQ 214
Query: 356 TTQLVKEKLSTCEAEDIATYEQNLQQW-HLDLVQLIQREQQQREQAKQEYQAQ 407
Q KL + I +Q LQ+ L L Q Q++QQQ++Q +Q QAQ
Sbjct: 215 QQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQ 267
Score = 28.9 bits (63), Expect = 9.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 376 EQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAA 410
+Q QQ Q +QQQ++Q +Q++QAQ++A
Sbjct: 161 QQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSA 195
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 35.4 bits (80), Expect = 0.096
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 296 ASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSL 355
A ++Q Q + Q + ++Q + +Q + Q+ + A+ + QA+ + + +
Sbjct: 159 ALQQQQQQQQFQQQQQAALQQ----QQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQ 214
Query: 356 TTQLVKEKLSTCEAEDIATYEQNLQQW-HLDLVQLIQREQQQREQAKQEYQAQ 407
Q KL + I +Q LQ+ L L Q Q++QQQ++Q +Q QAQ
Sbjct: 215 QQQQHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQ 267
Score = 28.9 bits (63), Expect = 9.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 376 EQNLQQWHLDLVQLIQREQQQREQAKQEYQAQKAA 410
+Q QQ Q +QQQ++Q +Q++QAQ++A
Sbjct: 161 QQQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSA 195
>gi|4758646 kinesin family member 3B [Homo sapiens]
Length = 747
Score = 35.0 bits (79), Expect = 0.12
Identities = 39/168 (23%), Positives = 86/168 (51%), Gaps = 21/168 (12%)
Query: 233 KVELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTS 292
K+E+++ RA+ + L+ + ++++++ ED++ ++A ++LGA +KA+ S
Sbjct: 420 KLEIEK--RAIVEDHSLV-----AEEKMRLLKEKEKKMEDLRREKDAAEMLGAKIKAMES 472
Query: 293 ---------ADGASEEQSQNDEDNQG-SEKLVEQLDIEETEQSKLPQYLERFKALHSKLQ 342
D +E+Q ++ Q +E+ + +I++ +S+ + LE K +S LQ
Sbjct: 473 KLLVGGKNIVDHTNEQQKILEQKRQEIAEQKRREREIQQQMESRDEETLE-LKETYSSLQ 531
Query: 343 ALGKIESEGLLSLTTQL--VKEKLSTCEAEDIATYEQNLQQWHLDLVQ 388
I+++ L L ++L VK ++ + E I Q L+Q +L +
Sbjct: 532 QEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKE-RQELEQTQNELTR 578
>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
Length = 1312
Score = 35.0 bits (79), Expect = 0.12
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 299 EQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQ 358
++ + E+ + + VE+ E EQ KL Q E+ + L +QAL + E +
Sbjct: 393 QRQRRIEEQKEERRRVEEQQRREREQRKL-QEKEQQRRLED-MQALRREEERRQAEREQE 450
Query: 359 LVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQ 405
+++L E ++ LQQ H L L Q++QQQ+ Q +Q+ Q
Sbjct: 451 YKRKQLE--EQRQSERLQRQLQQEHAYLKSLQQQQQQQQLQKQQQQQ 495
>gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]
Length = 1303
Score = 35.0 bits (79), Expect = 0.12
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 299 EQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQ 358
++ + E+ + + VE+ E EQ KL Q E+ + L +QAL + E +
Sbjct: 393 QRQRRIEEQKEERRRVEEQQRREREQRKL-QEKEQQRRLED-MQALRREEERRQAEREQE 450
Query: 359 LVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQ 405
+++L E ++ LQQ H L L Q++QQQ+ Q +Q+ Q
Sbjct: 451 YKRKQLE--EQRQSERLQRQLQQEHAYLKSLQQQQQQQQLQKQQQQQ 495
>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
Length = 1332
Score = 35.0 bits (79), Expect = 0.12
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 299 EQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQ 358
++ + E+ + + VE+ E EQ KL Q E+ + L +QAL + E +
Sbjct: 393 QRQRRIEEQKEERRRVEEQQRREREQRKL-QEKEQQRRLED-MQALRREEERRQAEREQE 450
Query: 359 LVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQ 405
+++L E ++ LQQ H L L Q++QQQ+ Q +Q+ Q
Sbjct: 451 YKRKQLE--EQRQSERLQRQLQQEHAYLKSLQQQQQQQQLQKQQQQQ 495
>gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens]
Length = 1295
Score = 35.0 bits (79), Expect = 0.12
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 299 EQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQ 358
++ + E+ + + VE+ E EQ KL Q E+ + L +QAL + E +
Sbjct: 393 QRQRRIEEQKEERRRVEEQQRREREQRKL-QEKEQQRRLED-MQALRREEERRQAEREQE 450
Query: 359 LVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQ 405
+++L E ++ LQQ H L L Q++QQQ+ Q +Q+ Q
Sbjct: 451 YKRKQLE--EQRQSERLQRQLQQEHAYLKSLQQQQQQQQLQKQQQQQ 495
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 34.3 bits (77), Expect = 0.21
Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 235 ELQQGLRAVYHNMPLIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSAD 294
+LQQ H+ L + + + Q+ + + ++ +E L A + +
Sbjct: 132 QLQQEKHQSVHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQEQLQTQQAQEQQVLQQQ 191
Query: 295 GASEEQSQNDED-NQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLL 353
++Q Q + Q E+L +Q +++ EQ + Q+ ++ + L + Q L ++ +G
Sbjct: 192 EQLQQQVQEQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLL-LLQQQG-- 248
Query: 354 SLTTQLVKEKLSTCEAEDIATYEQNLQQWHL--DLVQLIQREQQQREQAKQEYQAQK 408
L QL++++ + + + + + LQQ L QL Q++QQQ Q +QE Q+
Sbjct: 249 QLQQQLLQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQQLLQQQQEQLQQQ 305
Score = 33.1 bits (74), Expect = 0.47
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 32/188 (17%)
Query: 249 LIWKPGYLDRALQVMEKVAASPEDIKLCREALDVLGAVLKALTSADGASEEQSQNDEDNQ 308
++ +P +R L +V + E L + L+ G L+ G SE Q + + +
Sbjct: 1 MLHQPTPGNRGLTARMEVGPATETFVLELQCLEDGGPGPDTLSGGSGGSESQEEEEPQER 60
Query: 309 -------------GSEKLVEQ-------LDIEETEQSKLPQYLERFKAL-----HSKLQA 343
G+ ++ E+ L +++ EQ PQ + + L H +LQ
Sbjct: 61 NSSPQRPAVSAPVGASEIAEETRPGQRELQLQQLEQQPEPQQQPQHEQLQQPQPHLELQQ 120
Query: 344 LGKIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNL---QQWHLDLVQLIQREQQQREQA 400
+ + + LS QL +EK + +++ Q + QQ VQ QR QQQ+EQ
Sbjct: 121 QPQQDGQQQLS---QLQQEKHQSVHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQEQL 177
Query: 401 KQEYQAQK 408
Q QAQ+
Sbjct: 178 -QTQQAQE 184
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 34.3 bits (77), Expect = 0.21
Identities = 27/125 (21%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 286 VLKALTSADGASEEQSQNDEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALG 345
V+ +L + +SEE Q +E QGS+++ +EE ++ ER +A ++L+A
Sbjct: 224 VVMSLKNGQISSEEPKQEEEREQGSDEISHHEKMEEEDK-------ERAEAERARLEA-- 274
Query: 346 KIESEGLLSLTTQLVKEKLSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQ 405
E E + + + + ++ + EAE+ A ++ ++ + ++ + E++ E+ ++ +
Sbjct: 275 -EERERIKAEQDKKIADERARIEAEEKAAAQERERREAEERERMREEEKRAAEERQRIKE 333
Query: 406 AQKAA 410
+K A
Sbjct: 334 EEKRA 338
>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
Length = 715
Score = 33.9 bits (76), Expect = 0.28
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 375 YEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQK 408
Y++ +Q HL L+Q Q++QQQ++Q +Q+ Q Q+
Sbjct: 139 YKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQ 172
>gi|22538413 forkhead box P2 isoform III [Homo sapiens]
Length = 623
Score = 33.9 bits (76), Expect = 0.28
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 375 YEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQK 408
Y++ +Q HL L+Q Q++QQQ++Q +Q+ Q Q+
Sbjct: 47 YKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQ 80
>gi|149999352 forkhead box P2 isoform II [Homo sapiens]
Length = 740
Score = 33.9 bits (76), Expect = 0.28
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 375 YEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQK 408
Y++ +Q HL L+Q Q++QQQ++Q +Q+ Q Q+
Sbjct: 164 YKKQQEQLHLQLLQQQQQQQQQQQQQQQQQQQQQ 197
>gi|70166430 GRINL1A combined protein isoform 2 [Homo sapiens]
Length = 445
Score = 33.9 bits (76), Expect = 0.28
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 304 DEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEK 363
DE Q +L ++L + +Q L +++ + + A+ + + L LV
Sbjct: 123 DEMRQKIRQLTQELSVSHAQQEYLENHIQTQSSALDRFNAMNSALASDSIGLQKTLVDV- 181
Query: 364 LSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQK 408
T E +I +NLQQ + + ++ +Q+Q E A+ E Q K
Sbjct: 182 --TLENSNIKDQIRNLQQTYEASMDKLREKQRQLEVAQVENQLLK 224
>gi|70166414 GRINL1A combined protein isoform 1 [Homo sapiens]
Length = 550
Score = 33.9 bits (76), Expect = 0.28
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 304 DEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEK 363
DE Q +L ++L + +Q L +++ + + A+ + + L LV
Sbjct: 123 DEMRQKIRQLTQELSVSHAQQEYLENHIQTQSSALDRFNAMNSALASDSIGLQKTLVDV- 181
Query: 364 LSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQK 408
T E +I +NLQQ + + ++ +Q+Q E A+ E Q K
Sbjct: 182 --TLENSNIKDQIRNLQQTYEASMDKLREKQRQLEVAQVENQLLK 224
>gi|111494235 GRINL1A combined protein isoform 8 [Homo sapiens]
Length = 438
Score = 33.9 bits (76), Expect = 0.28
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Query: 304 DEDNQGSEKLVEQLDIEETEQSKLPQYLERFKALHSKLQALGKIESEGLLSLTTQLVKEK 363
DE Q +L ++L + +Q L +++ + + A+ + + L LV
Sbjct: 123 DEMRQKIRQLTQELSVSHAQQEYLENHIQTQSSALDRFNAMNSALASDSIGLQKTLVDV- 181
Query: 364 LSTCEAEDIATYEQNLQQWHLDLVQLIQREQQQREQAKQEYQAQK 408
T E +I +NLQQ + + ++ +Q+Q E A+ E Q K
Sbjct: 182 --TLENSNIKDQIRNLQQTYEASMDKLREKQRQLEVAQVENQLLK 224
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,310,007
Number of Sequences: 37866
Number of extensions: 597058
Number of successful extensions: 3020
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 2853
Number of HSP's gapped (non-prelim): 246
length of query: 414
length of database: 18,247,518
effective HSP length: 105
effective length of query: 309
effective length of database: 14,271,588
effective search space: 4409920692
effective search space used: 4409920692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.