Search of human proteins with 186910286

Search of human proteins with 186910286

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|186910286 ribonuclease H2, subunit B isoform 1 [Homo
sapiens]
         (312 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|186910286 ribonuclease H2, subunit B isoform 1 [Homo sapiens]      628   e-180
gi|214010191 ribonuclease H2, subunit B isoform 2 [Homo sapiens]      503   e-143
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa...    35   0.066
gi|104526627 triadin [Homo sapiens]                                    34   0.19 
gi|217330641 IWS1 homolog [Homo sapiens]                               33   0.33 
gi|209862748 ataxin 3-like [Homo sapiens]                              33   0.33 
gi|56961680 coiled-coil domain containing 147 [Homo sapiens]           33   0.33 
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          32   0.72 
gi|148612838 hypothetical protein LOC158358 [Homo sapiens]             32   0.72 
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof...    32   0.72 
gi|16418411 testis specific, 13 [Homo sapiens]                         32   0.95 
gi|156523260 SKA3 [Homo sapiens]                                       31   1.2  
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 31   1.2  
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap...    31   1.2  
gi|151301096 trimethylguanosine synthase homolog [Homo sapiens]        30   2.1  
gi|169205589 PREDICTED: chromosome 12 open reading frame 55 [Hom...    30   2.8  
gi|169203876 PREDICTED: hypothetical protein [Homo sapiens]            30   2.8  
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa...    30   2.8  
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap...    30   2.8  
gi|147903302 MAP7 domain containing 3 [Homo sapiens]                   30   2.8  
gi|14670352 general transcription factor II, i isoform 2 [Homo s...    30   3.6  
gi|14670350 general transcription factor II, i isoform 1 [Homo s...    30   3.6  
gi|117190342 PHD finger protein 2 [Homo sapiens]                       30   3.6  
gi|213385278 TNF receptor-associated factor 3 interacting protei...    30   3.6  
gi|57546899 myeloid/lymphoid or mixed-lineage leukemia transloca...    30   3.6  
gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocat...    30   3.6  
gi|151301150 sel-1 suppressor of lin-12-like 2 [Homo sapiens]          30   3.6  
gi|18093112 ABT1-associated protein [Homo sapiens]                     30   3.6  
gi|170784817 transcription factor CP2-like 3 [Homo sapiens]            29   4.7  
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     29   4.7  

>gi|186910286 ribonuclease H2, subunit B isoform 1 [Homo sapiens]
          Length = 312

 Score =  628 bits (1620), Expect = e-180
 Identities = 312/312 (100%), Positives = 312/312 (100%)

Query: 1   MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL 60
           MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
Sbjct: 1   MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL 60

Query: 61  FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN 120
           FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
Sbjct: 61  FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN 120

Query: 121 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT 180
           VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
Sbjct: 121 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT 180

Query: 181 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS 240
           NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
Sbjct: 181 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS 240

Query: 241 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF 300
           LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF
Sbjct: 241 LPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDTF 300

Query: 301 FGVKNKKKIGKV 312
           FGVKNKKKIGKV
Sbjct: 301 FGVKNKKKIGKV 312


>gi|214010191 ribonuclease H2, subunit B isoform 2 [Homo sapiens]
          Length = 257

 Score =  503 bits (1296), Expect = e-143
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL 60
           MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL
Sbjct: 1   MAAGVDCGDGVGARQHVFLVSEYLKDASKKMKNGLMFVKLVNPCSGEGAIYLFNMCLQQL 60

Query: 61  FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN 120
           FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN
Sbjct: 61  FEVKVFKEKHHSWFINQSVQSGGLLHFATPVDPLFLLLHYLIKADKEGKFQPLDQVVVDN 120

Query: 121 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT 180
           VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT
Sbjct: 121 VFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKT 180

Query: 181 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS 240
           NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS
Sbjct: 181 NNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSAS 240

Query: 241 LPNPPSK 247
           LPNPPSK
Sbjct: 241 LPNPPSK 247


>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
           sapiens]
          Length = 699

 Score = 35.4 bits (80), Expect = 0.066
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 17/98 (17%)

Query: 196 SGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSA-----SLPNPPSKKIK 250
           S + +S+D+EE+              K + +    Y  +P PSA     SL   P KK  
Sbjct: 266 SSEDSSSDEEEEQ------------KKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKKAV 313

Query: 251 LSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAK 288
              +PVE+ ED +  +    + EKK        KA  K
Sbjct: 314 EKQQPVESSEDSSDESDSSSEEEKKPPTKAVVSKATTK 351


>gi|104526627 triadin [Homo sapiens]
          Length = 729

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 9/139 (6%)

Query: 159 SKEKTLKWL----EKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYA-- 212
           S+EKT K +    ++KV QT A +K      S   +       ++A+  K E   +YA  
Sbjct: 214 SEEKTKKEVKGGKQEKVKQTAAKVKEVQKTPSKPKEKE---DKEKAAVSKHEQKDQYAFC 270

Query: 213 HGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKT 272
             +I  ++  +L    S  +  P P+     P      L ++  E K+   K  ++  K 
Sbjct: 271 RYMIDIFVHGDLKPGQSPAIPPPLPTEQASRPTPASPALEEKEGEKKKAEKKVTSETKKK 330

Query: 273 EKKNSKMTAAQKALAKVDK 291
           EK++ K  + ++    V+K
Sbjct: 331 EKEDIKKKSEKETAIDVEK 349


>gi|217330641 IWS1 homolog [Homo sapiens]
          Length = 819

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 149 EIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVS------SRVQSTAFFSGDQAST 202
           E ++KK    S E   +  E+KV +  AA+ +++ +        SRV S A  S   A +
Sbjct: 367 EEEHKKQKMDSDEDEKEGEEEKVAKRKAAVLSDSEDEEKASAKKSRVVSDADDSDSDAVS 426

Query: 203 DKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIK--LSDEPVEAKE 260
           DK     +       +   KELSD  ++   L    +   N     I     +   E +E
Sbjct: 427 DKSGKREKTIASDSEEEAGKELSDKKNEEKDLFGSDSESGNEEENLIADIFGESGDEEEE 486

Query: 261 DYTKFNTKDLKTEKKNSKMTAAQ 283
           ++T FN +DL+ EK  +++  A+
Sbjct: 487 EFTGFNQEDLEEEKGETQVKEAE 509


>gi|209862748 ataxin 3-like [Homo sapiens]
          Length = 355

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 30/157 (19%), Positives = 68/157 (43%), Gaps = 17/157 (10%)

Query: 143 EEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQAST 202
           EE   P+++ KK  K  + +  K + +KV++      T++ +     ++       +  T
Sbjct: 184 EEMDTPKLNGKKLVKQKEHRVYKTVLEKVSEESDESGTSDQDEEDFQRALEL---SRQET 240

Query: 203 DKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDY 262
           ++E++++R    L         S DL        P  S   P S      ++P + KEDY
Sbjct: 241 NREDEHLRSTIELSMQGSSGNTSQDL--------PKTSCVTPAS------EQPKKIKEDY 286

Query: 263 TKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIDT 299
            + + ++ K +++ S +      L +   +  ++I++
Sbjct: 287 FEKHQQEQKQQQQQSDLPGHSSYLHERPTTSSRAIES 323


>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
          Length = 872

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 168 EKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDD 227
           E+K  +T+ ALK   VN++  V+  +  S DQ S  +  D +R+      + + KE    
Sbjct: 113 EQKAKETILALKEEIVNLTKLVEQGSGLSMDQHSNIR--DLLRF-----KEEVTKERDQL 165

Query: 228 LSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALA 287
           LS+ +KL E   SL     ++ +      EA+   ++F  +  + + + S+    ++ L 
Sbjct: 166 LSEVVKLRE---SLAQTTEQQQETERSKEEAEHAISQFQQEIQQRQNEASREFRKKEKLE 222

Query: 288 KVDKSGMKSIDT 299
           K  K     +D+
Sbjct: 223 KELKQIQADMDS 234


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 32.0 bits (71), Expect = 0.72
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 222 KELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTA 281
           +E+  ++ K +K  E        P K++K    P E K++  K   K++K E+K  K   
Sbjct: 678 EEVKKEVKKEIKKEEKKE-----PKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPK--- 729

Query: 282 AQKALAKVDKSGMKS 296
             K + K+ K   KS
Sbjct: 730 --KEIKKLPKDAKKS 742


>gi|148612838 hypothetical protein LOC158358 [Homo sapiens]
          Length = 2103

 Score = 32.0 bits (71), Expect = 0.72
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 213 HGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIK--LSDEPVEAKEDYTKFNTKDL 270
           H ++ D +  E S    K LKL +  A       KK+K  L++     +E       K  
Sbjct: 657 HKVVRDIL-LEQSLQSHKKLKLTKMRAKKKKKKKKKLKDVLNENLQRKREGLHSLAFKSY 715

Query: 271 KTEKKNSKMTAAQKALAKVDKSGMKSIDTFFGVKNKKKIGK 311
           K E +N  +   +KA  K  KSG KS+      K +K + K
Sbjct: 716 KPEIQNKLLIIKKKAKHKKHKSGKKSVSKKAITKKRKTVIK 756


>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform 1
            [Homo sapiens]
          Length = 1722

 Score = 32.0 bits (71), Expect = 0.72
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 167  LEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEE---DYIRYAHG--LISDYI- 220
            L KK+   + A+K    +   R      F  D+A+ ++E    D  R+     L+S+ + 
Sbjct: 1411 LRKKLTTALEAIKNEESDEEYREIDLEDFIFDEAALEEEWLALDSTRFPSQTLLLSNQLH 1470

Query: 221  -PKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTK-DLKTEKKNSK 278
             PK     +   LK  + S +LP+ P++    +D+   +  ++T+FN++ + KT     +
Sbjct: 1471 WPK-----IPGNLKWDDTSFNLPSNPAQAWLCNDKENLSSSEHTQFNSRSENKTSSWTPE 1525

Query: 279  MTAAQKALAKVDKSGMKSIDTFFGVKN 305
               ++K+L K +K   K I   +G K+
Sbjct: 1526 SKTSRKSLLKSEKE--KKISEEWGFKD 1550


>gi|16418411 testis specific, 13 [Homo sapiens]
          Length = 275

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)

Query: 217 SDYIPKELSDDL--SKYLKLPEPSASLPNPPSKK-----------IKLSDEPVEAKEDYT 263
           S Y  KEL   +  S +   P  +  LP  P KK           + LSD+P   +E + 
Sbjct: 117 SKYFSKELLLKVMESHHQHKPTENLWLPRMPQKKKLRSKLKPIFPLILSDDPTSKREQWF 176

Query: 264 KFNT-KDLKTEKKNSKMTA 281
           +F+T  D K+E K SK+ A
Sbjct: 177 RFSTDNDFKSEGKYSKVYA 195


>gi|156523260 SKA3 [Homo sapiens]
          Length = 412

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 17/143 (11%)

Query: 178 LKTNNVNVSSRVQSTAFFSGDQ--ASTDKEEDYIR--YAHGLISDYIPK--ELSD-DLSK 230
           +K N+V+    + S    S  +    TD ++D      A   IS+  P+  +LSD  L +
Sbjct: 106 VKKNSVHEQEAINSDPELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLER 165

Query: 231 YLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVD 290
           Y+     S  LPNPP       +EPV       +   K LKT K   KM   +    K++
Sbjct: 166 YIV----SQVLPNPPQAVNNYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLE 221

Query: 291 KSGMKSI------DTFFGVKNKK 307
             G+         D   G+KN +
Sbjct: 222 HFGISEYTMCLNEDYTMGLKNAR 244


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 29/185 (15%)

Query: 129  LKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALK-----TNNV 183
            LKL GLE+L+  + + KG  ++ N     + K + L+  E K+N+ +   K      NN+
Sbjct: 1323 LKLKGLEELISTLKDTKGAQKVIN----WHMKIEELRLQELKLNRELVKDKEEIKYLNNI 1378

Query: 184  ------NVSSR----VQSTAFFSGDQASTDKEE-DYIRYAHGLISDYIPKELSDDLSKYL 232
                   +SS     VQ   F    Q + D+ E D  R     I D    E+ +   K+ 
Sbjct: 1379 ISEYERTISSLEEEIVQQNKFHEERQMAWDQREVDLERQLD--IFDRQQNEILNAAQKFE 1436

Query: 233  K----LPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDL--KTEKKNSKMTAAQKAL 286
            +    +P+PS  LPN     ++   E +    + T+   K L  K ++K S +  A++ +
Sbjct: 1437 EATGSIPDPSLPLPNQLEIALRKIKENIRIILE-TRATCKSLEEKLKEKESALRLAEQNI 1495

Query: 287  AKVDK 291
               DK
Sbjct: 1496 LSRDK 1500


>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
           sapiens]
          Length = 528

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 27/176 (15%)

Query: 136 KLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAA------------------ 177
           ++L  V EE   PE + K+ ++   E+ L   + +  Q +AA                  
Sbjct: 174 EMLRTVKEEAEKPEREAKEQHQKLWEEQLAAAKAQQEQELAADAFKELDDDMDGTVSVTE 233

Query: 178 ------LKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLS-- 229
                 L T+     S  ++ A  SGD   TD    Y R    +   Y  + L  DL   
Sbjct: 234 LQTHPELDTDGDGALSEAEAQALLSGD-TQTDATSFYDRVWAAIRDKYRSEALPTDLPAP 292

Query: 230 KYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKA 285
               L EP    P  PS   +  +E  E +E+  +   ++  +E+    ++  Q A
Sbjct: 293 SAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLSPPQPA 348


>gi|151301096 trimethylguanosine synthase homolog [Homo sapiens]
          Length = 853

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 153 KKYYKYSK-----EKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEED 207
           K ++K SK     EK L W+ K +++  +   +++ NV     ST+  S +Q  + K+ D
Sbjct: 503 KPFFKKSKILSKVEKFLTWVNKPMDEEASQESSSHDNVHDA--STSSDSEEQDMSVKKGD 560

Query: 208 YIRYAHGLISDYIPKELSDDLSKYLKLP----EPSASLPNPPSKKIKLSDEPVEAKEDYT 263
            +     L ++    E    +S   +L     E  + L   P ++  ++ E  ++++  T
Sbjct: 561 DL-----LETNNPEPEKCQSVSSAGELETENYERDSLLATVPDEQDCVTQEVPDSRQAET 615

Query: 264 KFNTKDLKTEKKNSKMTAAQKALAKV 289
           +   K  K +KKN K+      +A V
Sbjct: 616 EAEVKKKKNKKKNKKVNGLPPEIAAV 641


>gi|169205589 PREDICTED: chromosome 12 open reading frame 55 [Homo
            sapiens]
          Length = 1241

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/67 (23%), Positives = 35/67 (52%)

Query: 132  PGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQS 191
            PG + L     E++  PE D+ K    +K+     L +K+N+ +A L+T+ + ++ +  +
Sbjct: 1075 PGCKSLFDGSNEQEEMPEEDSSKKSLKTKKPQQILLPEKINEQLALLETHLLKLTKQYVT 1134

Query: 192  TAFFSGD 198
            +    G+
Sbjct: 1135 SELSGGE 1141


>gi|169203876 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1241

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/67 (23%), Positives = 35/67 (52%)

Query: 132  PGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQS 191
            PG + L     E++  PE D+ K    +K+     L +K+N+ +A L+T+ + ++ +  +
Sbjct: 1075 PGCKSLFDGSNEQEEMPEEDSSKKSLKTKKPQQILLPEKINEQLALLETHLLKLTKQYVT 1134

Query: 192  TAFFSGD 198
            +    G+
Sbjct: 1135 SELSGGE 1141


>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
           sapiens]
          Length = 817

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 167 LEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSD 226
           L KKV+ T+ + K+ N  +     +      +  S    E    + H  + +  P E++D
Sbjct: 259 LNKKVDLTLLSPKSENDKLKEISLACKITELESVSLPTPEIQSDFLHSKV-EAPPSEVAD 317

Query: 227 DL-----SKYLKLPEPSASLPNPPSKKIKLSDE--PVEAKEDYTKFNTKDLKTEKKNSKM 279
            L     SK ++LPEP   +   P K  + S+   P E K++      + +K   + +K 
Sbjct: 318 TLVIMTASKGVRLPEPKDKILETPQKMTEKSESKTPGEGKKEDKSRMAEPMKGYMRPTKS 377

Query: 280 TAAQKALAK 288
                 L K
Sbjct: 378 RGLTPLLPK 386


>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
           sapiens]
          Length = 887

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 167 LEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSD 226
           L KKV+ T+ + K+ N  +     +      +  S    E    + H  + +  P E++D
Sbjct: 259 LNKKVDLTLLSPKSENDKLKEISLACKITELESVSLPTPEIQSDFLHSKV-EAPPSEVAD 317

Query: 227 DL-----SKYLKLPEPSASLPNPPSKKIKLSDE--PVEAKEDYTKFNTKDLKTEKKNSKM 279
            L     SK ++LPEP   +   P K  + S+   P E K++      + +K   + +K 
Sbjct: 318 TLVIMTASKGVRLPEPKDKILETPQKMTEKSESKTPGEGKKEDKSRMAEPMKGYMRPTKS 377

Query: 280 TAAQKALAK 288
                 L K
Sbjct: 378 RGLTPLLPK 386


>gi|147903302 MAP7 domain containing 3 [Homo sapiens]
          Length = 876

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 168 EKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDD 227
           +K++ + +   +  +VN S   ++++    ++A  D EE         +++  P  + + 
Sbjct: 712 KKRIEEIMKRTRKTDVNASKVTETSSHDIYEEAEADNEES----DKDSLNEMFPSAILNG 767

Query: 228 LSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKT-EKKNSKMTAAQKAL 286
                K   P  +      K + L D   + +++   +   DLK   +K+ K T+ Q+ +
Sbjct: 768 TGSPTKFKMPFNNAKKMTHKLVFLEDGTSQVRKEPKTYFNGDLKNFRQKSMKDTSIQEVV 827

Query: 287 AKVDKSGMKSIDT 299
           ++     M S  T
Sbjct: 828 SRPSSKRMTSHTT 840


>gi|14670352 general transcription factor II, i isoform 2 [Homo
           sapiens]
          Length = 978

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 16/73 (21%), Positives = 35/73 (47%)

Query: 217 SDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKN 276
           + ++P E S+D    + + +   S P+   K  +L   PV    +  K   ++   EK N
Sbjct: 276 TQHVPSETSEDPEVEVTIEDDDYSPPSKRPKANELPQPPVPEPANAGKRKVREFNFEKWN 335

Query: 277 SKMTAAQKALAKV 289
           +++T  +K + ++
Sbjct: 336 ARITDLRKQVEEL 348


>gi|14670350 general transcription factor II, i isoform 1 [Homo
           sapiens]
          Length = 998

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 16/73 (21%), Positives = 35/73 (47%)

Query: 217 SDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKN 276
           + ++P E S+D    + + +   S P+   K  +L   PV    +  K   ++   EK N
Sbjct: 296 TQHVPSETSEDPEVEVTIEDDDYSPPSKRPKANELPQPPVPEPANAGKRKVREFNFEKWN 355

Query: 277 SKMTAAQKALAKV 289
           +++T  +K + ++
Sbjct: 356 ARITDLRKQVEEL 368


>gi|117190342 PHD finger protein 2 [Homo sapiens]
          Length = 1096

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 189 VQSTAFFSGDQASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKK 248
           VQ     +G   S  K++    +   L   + P +L  DL+K ++L E ++    P    
Sbjct: 396 VQGAKILNGAFRSWTKKQALAEHEDELPEHFKPSQLIKDLAKEIRLSENASKAVRPEVNT 455

Query: 249 IKLSDE-------------PVEAKEDYTKFNTKDLKTEKKNSKMTAAQK 284
           +  SDE             P+EA    +       K   K  KM    K
Sbjct: 456 VASSDEVCDGDREKEEPPSPIEATPPQSLLEKVSKKKTPKTVKMPKPSK 504


>gi|213385278 TNF receptor-associated factor 3 interacting protein 1
           isoform 2 [Homo sapiens]
          Length = 625

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 11/124 (8%)

Query: 156 YKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQ--STAFFSGDQASTDKEEDYIRYAH 213
           +K SK +T   +  + ++++   KT+     + V+  ST+   GD     +++  +    
Sbjct: 321 FKDSKAETETEISTRASKSLTT-KTSKRRSKNSVEGDSTSDAEGDAGPAGQDKSEVPE-- 377

Query: 214 GLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTE 273
              +  IP ELS ++ +   +P P ++ P PP  K + S E ++     +     ++ TE
Sbjct: 378 ---TPEIPNELSSNIRR---IPRPGSARPAPPRVKRQDSMEALQMDRSGSGKTVSNVITE 431

Query: 274 KKNS 277
             NS
Sbjct: 432 SHNS 435


>gi|57546899 myeloid/lymphoid or mixed-lineage leukemia translocated
           to, 10 isoform b [Homo sapiens]
          Length = 1011

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 235 PEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEK-KNSKMTAAQKALAKVD--- 290
           P P  S    P      S   V++ +D+  F   DL+ +   +S+ ++A K + K +   
Sbjct: 347 PFPQGSFSGTPGSVKSSSGSSVQSPQDFLSFTDSDLRNDSYSHSQQSSATKDVHKGESGS 406

Query: 291 -KSGMKSIDTFFGVKNKKKI 309
            + G+ S  T  G+ +   +
Sbjct: 407 QEGGVNSFSTLIGLPSTSAV 426


>gi|4757726 myeloid/lymphoid or mixed-lineage leukemia translocated
           to, 10 isoform a [Homo sapiens]
          Length = 1027

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 235 PEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEK-KNSKMTAAQKALAKVD--- 290
           P P  S    P      S   V++ +D+  F   DL+ +   +S+ ++A K + K +   
Sbjct: 347 PFPQGSFSGTPGSVKSSSGSSVQSPQDFLSFTDSDLRNDSYSHSQQSSATKDVHKGESGS 406

Query: 291 -KSGMKSIDTFFGVKNKKKI 309
            + G+ S  T  G+ +   +
Sbjct: 407 QEGGVNSFSTLIGLPSTSAV 426


>gi|151301150 sel-1 suppressor of lin-12-like 2 [Homo sapiens]
          Length = 688

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 31/142 (21%)

Query: 93  PLFLLLHYLI---------KADKEGKFQPLDQVVVDNVFPNCILLLKLPGLEKLLHHVTE 143
           PL LL+  LI         KA++  K Q    V            + +  +++ L H+ E
Sbjct: 3   PLSLLIEILIILGVTIKTIKAEEHNKRQKERNVTTQ---------VSVNEIKQYLSHILE 53

Query: 144 EKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQ---- 199
           ++ +  + NK+     K+K  + +  K  Q    LK N  ++  + +      GDQ    
Sbjct: 54  QRTSSNVINKRENLLEKKKNQRKIRIKGIQNKDILKRNKNHLQKQAEKNFTDEGDQLFKM 113

Query: 200 ---------ASTDKEEDYIRYA 212
                    +   KEE Y+ +A
Sbjct: 114 GIKVLQQSKSQKQKEEAYLLFA 135


>gi|18093112 ABT1-associated protein [Homo sapiens]
          Length = 851

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 220 IPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTK--FNTKDLKTEKKNS 277
           I    ++DL ++  L +  ++L    SK   LS + ++ K+  TK   ++K+L  +KK +
Sbjct: 60  ISHSTTEDLKRFYDLSDSDSNLSGEDSKA--LSQKKIKKKKTQTKKEIDSKNLVEKKKET 117

Query: 278 KMTAAQKALAKVDKSGMKSIDTFFGVKNKK 307
           K    + +  K D      +D   G+K  K
Sbjct: 118 KKANHKGSENKTD------LDNSIGIKKMK 141


>gi|170784817 transcription factor CP2-like 3 [Homo sapiens]
          Length = 625

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 119 DNVFPNCILLLKLPGLEKLLHHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAAL 178
           D+VF    L+LK P ++ L+  ++E+ G P     K YK SK+  L  ++  + +  +  
Sbjct: 547 DDVFD--ALMLKSPTVKGLMEAISEKYGLPVEKIAKLYKKSKKGILVNMDDNIIEHYSNE 604

Query: 179 KTNNVNVSSRVQ 190
            T  +N+ S V+
Sbjct: 605 DTFILNMESMVE 616


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 15/158 (9%)

Query: 142 TEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAALKTNNVNVSSRVQSTAFFSGDQAS 201
           TEEK     D+KK     KE     +E+K    V   K       S+V++    + D+  
Sbjct: 853 TEEKK----DSKKEEAPKKEAPKPKVEEKKEPAVEKPK------ESKVEAKKEEAEDKKK 902

Query: 202 TDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKED 261
               E        +  D  PKE ++   K  +  +  A  P+ P++K + + E  + KE+
Sbjct: 903 VPTPEKEAPAKVEVKEDAKPKEKTEVAKK--EPDDAKAKEPSKPAEKKEAAPEKKDTKEE 960

Query: 262 YTKFNTKDLKTE---KKNSKMTAAQKALAKVDKSGMKS 296
             K   +  KTE   K++ K  + + +  K +K+   S
Sbjct: 961 KAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSS 998


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,733,586
Number of Sequences: 37866
Number of extensions: 540125
Number of successful extensions: 1626
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 62
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.