Guide to the Human Genome
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Name: RNASEH2B Sequence: fasta or formatted (257aa) NCBI GI: 214010191
Description:

ribonuclease H2, subunit B isoform 2

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt prot [312aa] ribonuclease H2, subunit B isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         15           2
 C cysteine            1.6          4           1
 D aspartate           5.4         14           2
 E glutamate           5.8         15           2
 F phenylalanine       4.7         12           2
 G glycine             5.8         15           2
 H histidine           3.1          8           2
 I isoleucine          3.1          8           1
 K lysine             11.7         30           2
 L leucine            12.1         31           3
 M methionine          1.9          5           1
 N asparagine          5.1         13           2
 P proline             5.1         13           2
 Q glutamine           4.7         12           2
 R arginine            1.9          5           1
 S serine              7.0         18           2
 T threonine           2.7          7           1
 V valine              7.8         20           3
 W tryptophan          0.8          2           1
 Y tyrosine            3.9         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribonuclease H2, subunit B isoform 2 
RNASEH2B              0.962   ribonuclease H2, subunit B isoform 1 
CCDC147               0.012   coiled-coil domain containing 147 
C12orf55              0.010   PREDICTED: chromosome 12 open reading frame 55 [Hom...
C12orf55              0.010   PREDICTED: hypothetical protein 
MAP4                  0.010   microtubule-associated protein 4 isoform 5 
MAP4                  0.010   microtubule-associated protein 4 isoform 2 
SEL1L2                0.010   sel-1 suppressor of lin-12-like 2 
GRHL2                 0.008   transcription factor CP2-like 3 
HUWE1                 0.008   HECT, UBA and WWE domain containing 1 
GRHL3                 0.008   sister-of-mammalian grainyhead protein isoform 2 [Ho...
GRHL3                 0.008   sister-of-mammalian grainyhead protein isoform 3 [Ho...
GRHL3                 0.008   sister-of-mammalian grainyhead protein isoform 1 [Ho...
CDH16                 0.008   cadherin 16 precursor 
LEMD3                 0.008   LEM domain containing 3 
CEP290                0.006   centrosomal protein 290kDa 
ABCF1                 0.006   ATP-binding cassette, sub-family F, member 1 isoform...
ALPK2                 0.006   heart alpha-kinase 
ISCA2                 0.006   iron-sulfur cluster assembly 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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