Guide to the Human Genome
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Name: GTF2I Sequence: fasta or formatted (978aa) NCBI GI: 14670352
Description:

general transcription factor II, i isoform 2

Referenced in:

RNA Polymerase and General Transcription Factors
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [998aa] general transcription factor II, i isoform 1
alt prot [977aa] general transcription factor II, i isoform 3
alt prot [957aa] general transcription factor II, i isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         56           2
 C cysteine            0.9          9           1
 D aspartate           3.8         37           3
 E glutamate          10.6        104           4
 F phenylalanine       4.8         47           1
 G glycine             5.2         51           2
 H histidine           1.0         10           2
 I isoleucine          5.8         57           2
 K lysine              8.5         83           2
 L leucine             6.3         62           2
 M methionine          1.8         18           1
 N asparagine          4.1         40           4
 P proline             8.4         82           2
 Q glutamine           3.4         33           1
 R arginine            5.5         54           2
 S serine              7.0         68           2
 T threonine           5.3         52           2
 V valine              8.5         83           3
 W tryptophan          0.8          8           1
 Y tyrosine            2.5         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   general transcription factor II, i isoform 2 
GTF2I                 0.994   general transcription factor II, i isoform 1 
GTF2I                 0.973   general transcription factor II, i isoform 4 
GTF2I                 0.966   general transcription factor II, i isoform 3 
GTF2IRD2              0.232   GTF2I repeat domain containing 2 
GTF2IRD2B             0.232   GTF2I repeat domain containing 2B 
GTF2IRD1              0.185   GTF2I repeat domain containing 1 isoform 1 
GTF2IRD1              0.182   GTF2I repeat domain containing 1 isoform 2 
LOC100288291          0.069   PREDICTED: hypothetical protein XP_002344174 
LOC641765             0.055   PREDICTED: similar to hCG1983816 
LOC641765             0.055   PREDICTED: similar to hCG1983816 
LOC641765             0.055   PREDICTED: similar to hCG1983816 
LOC100291900          0.054   PREDICTED: similar to hCG2006635, partial 
LOC100290207          0.054   PREDICTED: hypothetical protein XP_002348308, parti...
LOC100288069          0.046   PREDICTED: hypothetical protein XP_002342058 
LOC100132733          0.011   PREDICTED: similar to FLJ00310 protein 
TTN                   0.010   titin isoform N2-A 
FOXN3                 0.006   checkpoint suppressor 1 isoform 1 
FOXN3                 0.006   checkpoint suppressor 1 isoform 2 
MORC3                 0.006   MORC family CW-type zinc finger 3 
AFF4                  0.006   ALL1 fused gene from 5q31 
SETD1A                0.006   SET domain containing 1A 
ACIN1                 0.005   apoptotic chromatin condensation inducer 1 
MAP1B                 0.005   microtubule-associated protein 1B 
LIG1                  0.005   DNA ligase I 
XRCC1                 0.005   X-ray repair cross complementing protein 1 
RGAG1                 0.005   retrotransposon gag domain containing 1 
LOC731852             0.004   PREDICTED: hypothetical protein 
LOC731852             0.004   PREDICTED: hypothetical protein 
LOC731852             0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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