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Search of human proteins with 18426973
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18426973 DR1-associated protein 1 [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18426973 DR1-associated protein 1 [Homo sapiens] 419 e-118
gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Ho... 56 2e-08
gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Ho... 56 2e-08
gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Ho... 56 2e-08
gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Hom... 56 2e-08
gi|38455394 DNA-directed DNA polymerase epsilon 4 [Homo sapiens] 45 3e-05
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 45 3e-05
gi|145301567 hypothetical protein LOC56006 [Homo sapiens] 44 7e-05
gi|4758216 dishevelled 2 [Homo sapiens] 42 5e-04
gi|151101459 SAPS domain family, member 1 [Homo sapiens] 40 0.002
gi|8393116 chromatin accessibility complex 1 [Homo sapiens] 40 0.002
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 39 0.002
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 39 0.002
gi|7706501 WW domain binding protein 11 [Homo sapiens] 39 0.002
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 39 0.004
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 39 0.004
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 39 0.004
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 39 0.004
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 39 0.004
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 39 0.004
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 39 0.004
gi|239743732 PREDICTED: family with sequence similarity 75, memb... 38 0.005
gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens] 38 0.005
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 38 0.005
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 38 0.005
gi|165377334 hypothetical protein LOC727905 [Homo sapiens] 38 0.005
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 38 0.007
gi|153791826 hypothetical protein LOC26165 [Homo sapiens] 38 0.007
gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens] 38 0.007
gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens] 38 0.007
>gi|18426973 DR1-associated protein 1 [Homo sapiens]
Length = 205
Score = 419 bits (1077), Expect = e-118
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR 60
MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR
Sbjct: 1 MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR 60
Query: 61 NAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGARRGRKPGSGGRK 120
NAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGARRGRKPGSGGRK
Sbjct: 61 NAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMDGDKGARRGRKPGSGGRK 120
Query: 121 NGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFA 180
NGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFA
Sbjct: 121 NGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFA 180
Query: 181 STLPLPPAPPGPSAPDEEDEEDYDS 205
STLPLPPAPPGPSAPDEEDEEDYDS
Sbjct: 181 STLPLPPAPPGPSAPDEEDEEDYDS 205
>gi|217272835 nuclear transcription factor Y, gamma isoform 5 [Homo
sapiens]
Length = 301
Score = 55.8 bits (133), Expect = 2e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 13 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQ 72
P ARIKKIM+ DE++ ++A PV+ ++A ++F+ L +A T+ +T+ + +
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 103
Query: 73 CIELEQQFDFLKDLV 87
I QFDFL D+V
Sbjct: 104 AITKFDQFDFLIDIV 118
>gi|217272831 nuclear transcription factor Y, gamma isoform 1 [Homo
sapiens]
Length = 354
Score = 55.8 bits (133), Expect = 2e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 13 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQ 72
P ARIKKIM+ DE++ ++A PV+ ++A ++F+ L +A T+ +T+ + +
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 103
Query: 73 CIELEQQFDFLKDLV 87
I QFDFL D+V
Sbjct: 104 AITKFDQFDFLIDIV 118
>gi|217272829 nuclear transcription factor Y, gamma isoform 3 [Homo
sapiens]
Length = 334
Score = 55.8 bits (133), Expect = 2e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 13 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQ 72
P ARIKKIM+ DE++ ++A PV+ ++A ++F+ L +A T+ +T+ + +
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 103
Query: 73 CIELEQQFDFLKDLV 87
I QFDFL D+V
Sbjct: 104 AITKFDQFDFLIDIV 118
>gi|11496978 nuclear transcription factor Y, gamma isoform 2 [Homo
sapiens]
Length = 335
Score = 55.8 bits (133), Expect = 2e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 13 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQ 72
P ARIKKIM+ DE++ ++A PV+ ++A ++F+ L +A T+ +T+ + +
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 103
Query: 73 CIELEQQFDFLKDLV 87
I QFDFL D+V
Sbjct: 104 AITKFDQFDFLIDIV 118
>gi|38455394 DNA-directed DNA polymerase epsilon 4 [Homo sapiens]
Length = 117
Score = 45.4 bits (106), Expect = 3e-05
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 10 ARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 69
+R P AR+K +++ D ++ I++RA ELF+E++ K A Q KT+
Sbjct: 39 SRLPLARVKALVKADPDVTLAGQEAIFILARAAELFVETIAKDAYCCAQQGKRKTLQRRD 98
Query: 70 LKQCIELEQQFDFLK 84
L IE +F FL+
Sbjct: 99 LDNAIEAVDEFAFLE 113
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 45.4 bits (106), Expect = 3e-05
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 95 GDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEE 154
G G+ H + + + R+ GSG + G K +++KL + E+++E E+ D +GEE+
Sbjct: 326 GQGQGQHEESWQDVPQ-RRVGSG--QGGSPCWKKQEQKLDDEEEEKKEE-EEKDKEGEEK 381
Query: 155 TSQPPPQASHPSAHFQS---PPTPFLPFASTLPLPPAPPGPSAP 195
+ + P+A + PP P P A + P P PP S P
Sbjct: 382 EERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSPP 425
>gi|145301567 hypothetical protein LOC56006 [Homo sapiens]
Length = 520
Score = 44.3 bits (103), Expect = 7e-05
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 104 GDKGARRGRKPGSGGRKN-GGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEET----SQP 158
G + RR ++PGSGG +N G G + +D ++ + E+ D SE+T T ++T S+P
Sbjct: 13 GIERRRRWKEPGSGGPQNLSGPGGRERDY-IAPWERERRDASEETSTSVMQKTPIILSKP 71
Query: 159 PPQASHPSAHFQSPPTPFLPFASTLPLPPAPP 190
P + S + PP P P A P P P
Sbjct: 72 PAERS------KQPPPPTAPAAPPAPAPLEKP 97
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 41.6 bits (96), Expect = 5e-04
Identities = 30/117 (25%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 95 GDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEE 154
G H +G + + R G GR + K SG++SE GE
Sbjct: 579 GSASSQHSEGSRSSGSTRSDGGAGRTGRPEERAPESKSGSGSESEPSSRGGSLRRGGEAS 638
Query: 155 TSQ---PPPQ----------ASHPSAHFQSPP----TPFLPFASTLPLPPAPPGPSA 194
+ PPP +HP H PP P+ P + PP PP P A
Sbjct: 639 GTSDGGPPPSRGSTGGAPNLRAHPGLHPYGPPPGMALPYNPMMVVMMPPPPPPVPPA 695
>gi|151101459 SAPS domain family, member 1 [Homo sapiens]
Length = 881
Score = 39.7 bits (91), Expect = 0.002
Identities = 46/165 (27%), Positives = 65/165 (39%), Gaps = 32/165 (19%)
Query: 52 KACQVTQSRNA--KTMTTSHLKQCIELE-QQFDFLKDLVASVPDMQGDGEDNHMDGDKGA 108
K +T S NA + + L+ C + QQFD ++ + QG GE DG+ GA
Sbjct: 589 KTANITFSLNADDENPNANLLEICYKDRIQQFDDDEE-EEDEEEAQGSGES---DGEDGA 644
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEE-----------ETSQ 157
+G + G R G +S TDSE E+E ++ + + EE S
Sbjct: 645 WQGSQLARGARLGQPPGVRSG----GSTDSEDEEEEDEEEEEDEEGIGCAARGGATPLSY 700
Query: 158 PPPQASHPSAHFQSPPTPFLPFASTLPL----------PPAPPGP 192
P P P + + P A T P PPAP GP
Sbjct: 701 PSPGPQPPGPSWTATFDPVPTDAPTSPRVSGEEELHTGPPAPQGP 745
>gi|8393116 chromatin accessibility complex 1 [Homo sapiens]
Length = 131
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 13 PPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQ 72
P +RI+ IM++ E+ + V+ ++A ELF++ L + + + K +T S L
Sbjct: 20 PLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLAN 79
Query: 73 CIELEQQFDFLKDLV 87
+ + F FL D++
Sbjct: 80 TAQQSETFQFLADIL 94
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 129 KDKKLSGT-DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFL-PFASTLPLP 186
KD K GT DS+ E+ T E ETS+ P+ PP P P T PLP
Sbjct: 493 KDLKAQGTRDSKPIALKEEIVTPKETETSEKETPPPLPTIASPPPPLPTTTPPPQTPPLP 552
Query: 187 PAPPGPSAPDE 197
P PP P+ P +
Sbjct: 553 PLPPIPALPQQ 563
Score = 30.8 bits (68), Expect = 0.84
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 134 SGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPS 193
S T + T + SQPP Q S Q T +P T LPP P P
Sbjct: 579 SSTSTLPPSTHSKTSAVSSQANSQPPVQV---SVKTQVSVTAAIPHLKTSTLPPLPLPPL 635
Query: 194 APDEED 199
P ++D
Sbjct: 636 LPGDDD 641
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 39.3 bits (90), Expect = 0.002
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 129 KDKKLSGT-DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFL-PFASTLPLP 186
KD K GT DS+ E+ T E ETS+ P+ PP P P T PLP
Sbjct: 493 KDLKAQGTRDSKPIALKEEIVTPKETETSEKETPPPLPTIASPPPPLPTTTPPPQTPPLP 552
Query: 187 PAPPGPSAPDE 197
P PP P+ P +
Sbjct: 553 PLPPIPALPQQ 563
Score = 30.8 bits (68), Expect = 0.84
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 134 SGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPS 193
S T + T + SQPP Q S Q T +P T LPP P P
Sbjct: 579 SSTSTLPPSTHSKTSAVSSQANSQPPVQV---SVKTQVSVTAAIPHLKTSTLPPLPLPPL 635
Query: 194 APDEED 199
P ++D
Sbjct: 636 LPGDDD 641
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/61 (27%), Positives = 22/61 (36%)
Query: 145 EDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPDEEDEEDYD 204
E+ ++D P + P + P LP P PP PP P P E D
Sbjct: 1228 EENNSDKNSGPQGPRRTPTMPQEEAAACPPHILPPEKRPPEPPGPPPPPPPPPLVEGDLS 1287
Query: 205 S 205
S
Sbjct: 1288 S 1288
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 128 SKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPP 187
S+ +K S ++E S+ T T ++ Q PPQ+ PS Q+PP P P P PP
Sbjct: 364 SEAEKQSQKQHKEESHSDGTSTASSQQ--QAPPQSVPPS-QIQAPPMPGPPPLGPPPAPP 420
Query: 188 -APPGP 192
PPGP
Sbjct: 421 LRPPGP 426
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 38.5 bits (88), Expect = 0.004
Identities = 44/177 (24%), Positives = 65/177 (36%), Gaps = 23/177 (12%)
Query: 38 ISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEQQFDFLKDLVASVPDMQGDG 97
ISRA E +E + + A + S ++ + Q K+ V + G
Sbjct: 917 ISRACETLVERVGRSATDPADPVDTAEPADSGTERLLPPAQA----KEEAGGVAAVSGSC 972
Query: 98 EDNHMDGDKGARR---------GRKPGSGGRKNGGMGTKSKDKKLSGT-DSEQED----E 143
+ + K RR GR+P G K K K +++ G D + E+ E
Sbjct: 973 KRRQKEHQKEHRRHRRACKDSVGRRPREGRAKAKAKVPKEKSRRVLGNLDLQSEEIQGRE 1032
Query: 144 SEDTDTDGEEETSQP----PPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPD 196
D G + P PP A PSA +PP+ +P P PPG S D
Sbjct: 1033 KSRPDLGGASKAKPPTAPAPPSAPAPSAQ-PTPPSASVPGKKAREEAPGPPGVSRAD 1088
Score = 33.5 bits (75), Expect = 0.13
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 114 PGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASH-----PSAH 168
P + R G GT + S +++ + G + P + SH PSAH
Sbjct: 384 PYAPSRPPGLPGTTTSSSSSSSSNTGLRGVEPNPGIPGADHYQTPALEVSHHGRLGPSAH 443
Query: 169 FQSPPTPFLPFASTLPLPPAPPGPSAP 195
S PFL + P PPGPS+P
Sbjct: 444 --SSRKPFLGAPAATPHLSLPPGPSSP 468
Score = 31.6 bits (70), Expect = 0.49
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 147 TDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSA 194
T T +EE +PPP P P F P + P PP PP P++
Sbjct: 760 TTTATQEEEKKPPPALPPPP-----PLAKFPPPSQPQPPPPPPPSPAS 802
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEET-SQPPPQASHPSA 167
R+G P G+ + K+ E++ +S ++D EEE +Q P P
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKR------EEDSQSSSEESDSEEEAPAQAKPSGKAPQV 359
Query: 168 HFQSPPTPFLPFASTLPLPPAPPGPSAPDEE---DEED 202
S P P P PP GP+A + EED
Sbjct: 360 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED 397
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 136 TDSEQEDESEDTDTDGEEET---SQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGP 192
T E++ S + ++D EEE +Q P P P P PP GP
Sbjct: 785 TGPEEDSGSSEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGP 844
Query: 193 SAPDEEDEEDYDS 205
SA ++D S
Sbjct: 845 SAAQAGKQDDSGS 857
Score = 31.2 bits (69), Expect = 0.64
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 137 DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPD 196
DSE E +DGE T+ P Q Q+ PT +S PP GP A
Sbjct: 467 DSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPT-----SSPAKGPPQKAGPVAVQ 521
Query: 197 EEDEEDYDS 205
+ E+ D+
Sbjct: 522 VKAEKPMDN 530
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 110 RGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETS------QPPPQAS 163
+G P G K G + +++K +G E + S + +D EEET Q
Sbjct: 236 KGATPAPPG-KAGAVASQTK----AGKPEEDSESSSEESSDSEEETPAAKALLQAKASGK 290
Query: 164 HPSAHFQSPPTPFLPFASTLPLPPAPPGPS---APDEEDEEDYDS 205
S P P P PP GP+ A + EED S
Sbjct: 291 TSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQS 335
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEET-SQPPPQASHPSA 167
R+G P G+ + K+ E++ +S ++D EEE +Q P P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKR------EEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 168 HFQSPPTPFLPFASTLPLPPAPPGPSAPDEE---DEED 202
S P P P PP GP+A + EED
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED 474
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 136 TDSEQEDESEDTDTDGEEET---SQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGP 192
T E++ S + ++D EEE +Q P P P P PP GP
Sbjct: 862 TGPEEDSGSSEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGP 921
Query: 193 SAPDEEDEEDYDS 205
SA ++D S
Sbjct: 922 SAAQAGKQDDSGS 934
Score = 31.2 bits (69), Expect = 0.64
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 137 DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPD 196
DSE E +DGE T+ P Q Q+ PT +S PP GP A
Sbjct: 544 DSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPT-----SSPAKGPPQKAGPVAVQ 598
Query: 197 EEDEEDYDS 205
+ E+ D+
Sbjct: 599 VKAEKPMDN 607
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 110 RGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETS------QPPPQAS 163
+G P G K G + +++K +G E + S + +D EEET Q
Sbjct: 313 KGATPAPPG-KAGAVASQTK----AGKPEEDSESSSEESSDSEEETPAAKALLQAKASGK 367
Query: 164 HPSAHFQSPPTPFLPFASTLPLPPAPPGPS---APDEEDEEDYDS 205
S P P P PP GP+ A + EED S
Sbjct: 368 TSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQS 412
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEET-SQPPPQASHPSA 167
R+G P G+ + K+ E++ +S ++D EEE +Q P P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKR------EEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 168 HFQSPPTPFLPFASTLPLPPAPPGPSAPDEE---DEED 202
S P P P PP GP+A + EED
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED 474
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 136 TDSEQEDESEDTDTDGEEET---SQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGP 192
T E++ S + ++D EEE +Q P P P P PP GP
Sbjct: 862 TGPEEDSGSSEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGP 921
Query: 193 SAPDEEDEEDYDS 205
SA ++D S
Sbjct: 922 SAAQAGKQDDSGS 934
Score = 31.2 bits (69), Expect = 0.64
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 137 DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPD 196
DSE E +DGE T+ P Q Q+ PT +S PP GP A
Sbjct: 544 DSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPT-----SSPAKGPPQKAGPVAVQ 598
Query: 197 EEDEEDYDS 205
+ E+ D+
Sbjct: 599 VKAEKPMDN 607
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 110 RGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETS------QPPPQAS 163
+G P G K G + +++K +G E + S + +D EEET Q
Sbjct: 313 KGATPAPPG-KAGAVASQTK----AGKPEEDSESSSEESSDSEEETPAAKALLQAKASGK 367
Query: 164 HPSAHFQSPPTPFLPFASTLPLPPAPPGPS---APDEEDEEDYDS 205
S P P P PP GP+ A + EED S
Sbjct: 368 TSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQS 412
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEET-SQPPPQASHPSA 167
R+G P G+ + K+ E++ +S ++D EEE +Q P P
Sbjct: 306 RKGAAPAPPGKTGPAVAKAQAGKR------EEDSQSSSEESDSEEEAPAQAKPSGKAPQV 359
Query: 168 HFQSPPTPFLPFASTLPLPPAPPGPSAPDEE---DEED 202
S P P P PP GP+A + EED
Sbjct: 360 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED 397
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 136 TDSEQEDESEDTDTDGEEET---SQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGP 192
T E++ S + ++D EEE +Q P P P P PP GP
Sbjct: 785 TGPEEDSGSSEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGP 844
Query: 193 SAPDEEDEEDYDS 205
SA ++D S
Sbjct: 845 SAAQAGKQDDSGS 857
Score = 31.2 bits (69), Expect = 0.64
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 137 DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPD 196
DSE E +DGE T+ P Q Q+ PT +S PP GP A
Sbjct: 467 DSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPT-----SSPAKGPPQKAGPVAVQ 521
Query: 197 EEDEEDYDS 205
+ E+ D+
Sbjct: 522 VKAEKPMDN 530
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 110 RGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETS------QPPPQAS 163
+G P G K G + +++K +G E + S + +D EEET Q
Sbjct: 236 KGATPAPPG-KAGAVASQTK----AGKPEEDSESSSEESSDSEEETPAAKALLQAKASGK 290
Query: 164 HPSAHFQSPPTPFLPFASTLPLPPAPPGPS---APDEEDEEDYDS 205
S P P P PP GP+ A + EED S
Sbjct: 291 TSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQS 335
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEET-SQPPPQASHPSA 167
R+G P G+ + K+ E++ +S ++D EEE +Q P P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKR------EEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 168 HFQSPPTPFLPFASTLPLPPAPPGPSAPDEE---DEED 202
S P P P PP GP+A + EED
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED 474
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 136 TDSEQEDESEDTDTDGEEET---SQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGP 192
T E++ S + ++D EEE +Q P P P P PP GP
Sbjct: 862 TGPEEDSGSSEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGP 921
Query: 193 SAPDEEDEEDYDS 205
SA ++D S
Sbjct: 922 SAAQAGKQDDSGS 934
Score = 31.2 bits (69), Expect = 0.64
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 137 DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPD 196
DSE E +DGE T+ P Q Q+ PT +S PP GP A
Sbjct: 544 DSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPT-----SSPAKGPPQKAGPVAVQ 598
Query: 197 EEDEEDYDS 205
+ E+ D+
Sbjct: 599 VKAEKPMDN 607
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 110 RGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETS------QPPPQAS 163
+G P G K G + +++K +G E + S + +D EEET Q
Sbjct: 313 KGATPAPPG-KAGAVASQTK----AGKPEEDSESSSEESSDSEEETPAAKALLQAKASGK 367
Query: 164 HPSAHFQSPPTPFLPFASTLPLPPAPPGPS---APDEEDEEDYDS 205
S P P P PP GP+ A + EED S
Sbjct: 368 TSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQS 412
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 38.5 bits (88), Expect = 0.004
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEET-SQPPPQASHPSA 167
R+G P G+ + K+ E++ +S ++D EEE +Q P P
Sbjct: 383 RKGAAPAPPGKTGPAVAKAQAGKR------EEDSQSSSEESDSEEEAPAQAKPSGKAPQV 436
Query: 168 HFQSPPTPFLPFASTLPLPPAPPGPSAPDEE---DEED 202
S P P P PP GP+A + EED
Sbjct: 437 RAASAPAKESPRKGAAPAPPRKTGPAAAQVQVGKQEED 474
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 136 TDSEQEDESEDTDTDGEEET---SQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGP 192
T E++ S + ++D EEE +Q P P P P PP GP
Sbjct: 862 TGPEEDSGSSEEESDSEEEAETLAQVKPSGKTHQIRAALAPAKESPRKGAAPTPPGKTGP 921
Query: 193 SAPDEEDEEDYDS 205
SA ++D S
Sbjct: 922 SAAQAGKQDDSGS 934
Score = 31.2 bits (69), Expect = 0.64
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 137 DSEQEDESEDTDTDGEEETSQPPPQASHPSAHFQSPPTPFLPFASTLPLPPAPPGPSAPD 196
DSE E +DGE T+ P Q Q+ PT +S PP GP A
Sbjct: 544 DSESSSEESSDSSDGEVPTAVAPAQEKSLGNILQAKPT-----SSPAKGPPQKAGPVAVQ 598
Query: 197 EEDEEDYDS 205
+ E+ D+
Sbjct: 599 VKAEKPMDN 607
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 14/105 (13%)
Query: 110 RGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETS------QPPPQAS 163
+G P G K G + +++K +G E + S + +D EEET Q
Sbjct: 313 KGATPAPPG-KAGAVASQTK----AGKPEEDSESSSEESSDSEEETPAAKALLQAKASGK 367
Query: 164 HPSAHFQSPPTPFLPFASTLPLPPAPPGPS---APDEEDEEDYDS 205
S P P P PP GP+ A + EED S
Sbjct: 368 TSQVGAASAPAKESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQS 412
>gi|239743732 PREDICTED: family with sequence similarity 75, member
A4 isoform 1 [Homo sapiens]
Length = 1361
Score = 38.1 bits (87), Expect = 0.005
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 36/167 (21%)
Query: 51 KKACQVTQSRNAKTMTTSH-LKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMD-GDKGA 108
K+ C V + R + +H L+ E + + DL++ + + G H+D GD G
Sbjct: 75 KRKCPVGRRRRPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGP----HLDKGDFGQ 130
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHP--- 165
G P G +G ++ D + ED + + P PQA HP
Sbjct: 131 LSGPDPP------GEVGERAPDGASQSSHEPMEDAAPILSP-----LASPDPQAKHPQDL 179
Query: 166 --------------SAHFQSPPTPFLPFASTLPLPPA--PPGPSAPD 196
S PP P LP P PPA P P PD
Sbjct: 180 ASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPD 226
>gi|224586804 DNA-directed DNA polymerase epsilon 3 [Homo sapiens]
Length = 147
Score = 38.1 bits (87), Expect = 0.005
Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 17 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76
IK+ + I K A + ISRA +F+ A KT+ S + +E
Sbjct: 19 IKEALPDGVNISKEARSA---ISRAASVFVLYATSCANNFAMKGKRKTLNASDVLSAMEE 75
Query: 77 EQQFDFLKDLVASVPDMQGDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGT 136
+ F+ L + ++ + ++G+K S +K K KDKK T
Sbjct: 76 MEFQRFVTPLKEA------------LEAYRREQKGKKEASEQKK------KDKDKK---T 114
Query: 137 DSEQEDESEDTDTDGEEETSQPPPQ 161
DSE++D+S D D D +EE + Q
Sbjct: 115 DSEEQDKSRDEDNDEDEERLEEEEQ 139
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 38.1 bits (87), Expect = 0.005
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 94 QGDGEDNHMDGD----KGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDT 149
+G+GE+ +G+ +G G + G G + G G + ++ ++ G +E E E +
Sbjct: 978 EGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEE 1037
Query: 150 DGEEE 154
+GEEE
Sbjct: 1038 EGEEE 1042
Score = 37.0 bits (84), Expect = 0.012
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 94 QGDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSK----DKKLSGTDSEQEDESEDTDT 149
QG+GE+ +G RG + GG GG + K +++ G E+E E E+ +
Sbjct: 793 QGEGEEEETEG-----RGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEG 847
Query: 150 DGEEETSQ 157
+GEEE +
Sbjct: 848 EGEEEEGE 855
Score = 33.5 bits (75), Expect = 0.13
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 94 QGDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEE 153
+G+GE+ +G+ G G G G + ++ + G + E E E ED + +GEE
Sbjct: 892 EGEGEEEEGEGE-GEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEE 950
Query: 154 ETSQ 157
E +
Sbjct: 951 EEGE 954
Score = 33.5 bits (75), Expect = 0.13
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 94 QGDGEDNHMDGD-KGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGE 152
+G+GE +G+ KG G + G + G G G D E E E E+ + +GE
Sbjct: 907 EGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEG--------EGEDGEGEGEEEEGEWEGE 958
Query: 153 EETSQ 157
EE +
Sbjct: 959 EEEGE 963
Score = 32.0 bits (71), Expect = 0.38
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 94 QGDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEE 153
+G+GE+ +G+ G G + G G + + + + E E E E+ + GEE
Sbjct: 864 EGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEE 923
Query: 154 E 154
E
Sbjct: 924 E 924
Score = 31.6 bits (70), Expect = 0.49
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 94 QGDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEE 153
+G+GED +G++ G + G G ++ + G + E E E E+ + +GEE
Sbjct: 938 EGEGEDGEGEGEEEEGEWE-----GEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEE 992
Query: 154 ETSQ 157
E +
Sbjct: 993 EEGE 996
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 94 QGDGEDNHMDGDKGARRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDT-DTDGE 152
+G GE+ +G+ G G + G + G G ++ + G + E E E E+ + +GE
Sbjct: 855 EGKGEEEGEEGE-GEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGE 913
Query: 153 EETSQ 157
EE +
Sbjct: 914 EEEGE 918
Score = 29.3 bits (64), Expect = 2.4
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 13/65 (20%)
Query: 94 QGDGEDNHMDGDKGARRGRKPGSGGRKNG-GMGTKSKDKKLSGTDSEQEDESEDTDTDGE 152
+G+GE+ +G++ + G G + G G G + G + E E+E E+ + +GE
Sbjct: 832 EGEGEEEEGEGEE------EEGEGEEEEGEGKGEEE------GEEGEGEEEGEEGEGEGE 879
Query: 153 EETSQ 157
EE +
Sbjct: 880 EEEGE 884
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 38.1 bits (87), Expect = 0.005
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 36/167 (21%)
Query: 51 KKACQVTQSRNAKTMTTSH-LKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMD-GDKGA 108
K+ C V + R + +H L+ E + + DL++ + + G H+D GD G
Sbjct: 61 KRKCPVGRRRRPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGP----HLDKGDFGQ 116
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHP--- 165
G P G +G ++ D + ED + + P PQA HP
Sbjct: 117 LSGPDPP------GEVGERAPDGASQSSHEPMEDAAPILSL-----LASPDPQAKHPQDL 165
Query: 166 --------------SAHFQSPPTPFLPFASTLPLPPA--PPGPSAPD 196
S PP P LP P PPA P P PD
Sbjct: 166 ASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPD 212
>gi|165377334 hypothetical protein LOC727905 [Homo sapiens]
Length = 1347
Score = 38.1 bits (87), Expect = 0.005
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 36/167 (21%)
Query: 51 KKACQVTQSRNAKTMTTSH-LKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMD-GDKGA 108
K+ C V + R + +H L+ E + + DL++ + + G H+D GD G
Sbjct: 61 KRKCPVGRRRRPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGP----HLDKGDFGQ 116
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHP--- 165
G P G +G ++ D + ED + + P PQA HP
Sbjct: 117 LSGPDPP------GEVGERAPDGASQSSHEPMEDAAPILSP-----LASPDPQAKHPQDL 165
Query: 166 --------------SAHFQSPPTPFLPFASTLPLPPA--PPGPSAPD 196
S PP P LP P PPA P P PD
Sbjct: 166 ASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPD 212
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 37.7 bits (86), Expect = 0.007
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 36/167 (21%)
Query: 51 KKACQVTQSRNAKTMTTSH-LKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMD-GDKGA 108
K+ C V + R + +H L+ E + + DL++ + + G H+D GD G
Sbjct: 61 KRKCPVGRRRRPRGRMKNHSLRAGRECPRGLEETSDLLSQLQSLLGP----HLDKGDFGQ 116
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHP--- 165
G P G +G ++ D + ED + + P PQA HP
Sbjct: 117 LSGPDPP------GEVGERAPDGASQSSHEPMEDAAPILSP-----LASPDPQAKHPQDL 165
Query: 166 --------------SAHFQSPPTPFLPFASTLPLPPA--PPGPSAPD 196
S PP P LP P PPA P P PD
Sbjct: 166 ASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPD 212
>gi|153791826 hypothetical protein LOC26165 [Homo sapiens]
Length = 1347
Score = 37.7 bits (86), Expect = 0.007
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 36/167 (21%)
Query: 51 KKACQVTQSRNAKTMTTSH-LKQCIELEQQFDFLKDLVASVPDMQGDGEDNHMD-GDKGA 108
K+ C V + R + +H L+ E + + DL++ + + G H+D GD G
Sbjct: 61 KRKCPVGRRRRPRGRMKNHSLRAGRECPRGLEETSDLLSQLQSLLGP----HLDKGDFGQ 116
Query: 109 RRGRKPGSGGRKNGGMGTKSKDKKLSGTDSEQEDESEDTDTDGEEETSQPPPQASHP--- 165
G P G +G ++ D + ED + + P PQA HP
Sbjct: 117 LSGPDPP------GEVGERAPDGASQSSHEPMEDAAPILSP-----LASPDPQAKHPQDL 165
Query: 166 --------------SAHFQSPPTPFLPFASTLPLPPA--PPGPSAPD 196
S PP P LP P PPA P P PD
Sbjct: 166 ASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPD 212
>gi|21040334 B-cell CLL/lymphoma 11B isoform 1 [Homo sapiens]
Length = 894
Score = 37.7 bits (86), Expect = 0.007
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 155 TSQPPPQA---SHPSAHFQSP--PTPFLPFASTLPLPPAPPGPSAPDE 197
+S PPP + +P +P P+P PF ST PLPP PPG + P +
Sbjct: 374 SSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPPGGTPPPQ 421
>gi|12597635 B-cell CLL/lymphoma 11B isoform 2 [Homo sapiens]
Length = 823
Score = 37.7 bits (86), Expect = 0.007
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 155 TSQPPPQA---SHPSAHFQSP--PTPFLPFASTLPLPPAPPGPSAPDE 197
+S PPP + +P +P P+P PF ST PLPP PPG + P +
Sbjct: 303 SSTPPPVSPGRGNPMHRLLNPFQPSPKSPFLSTPPLPPMPPGGTPPPQ 350
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,760,888
Number of Sequences: 37866
Number of extensions: 653712
Number of successful extensions: 11684
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 682
Number of HSP's that attempted gapping in prelim test: 7523
Number of HSP's gapped (non-prelim): 4006
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.