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Search of human proteins with 18426911
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18426911 signal-regulatory protein alpha precursor [Homo
sapiens]
(504 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18426911 signal-regulatory protein alpha precursor [Homo sapi... 1019 0.0
gi|91105767 signal-regulatory protein alpha precursor [Homo sapi... 1019 0.0
gi|91105764 signal-regulatory protein alpha precursor [Homo sapi... 1019 0.0
gi|209529703 signal-regulatory protein beta 1 isoform 3 precurso... 665 0.0
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso... 609 e-174
gi|94538335 signal-regulatory protein gamma isoform 1 precursor ... 562 e-160
gi|94538339 signal-regulatory protein gamma isoform 3 precursor ... 394 e-110
gi|239751927 PREDICTED: similar to signal-regulatory protein bet... 230 3e-60
gi|169217521 PREDICTED: similar to signal-regulatory protein bet... 226 3e-59
gi|144953878 signal-regulatory protein beta 1 isoform 2 precurso... 223 3e-58
gi|94538337 signal-regulatory protein gamma isoform 2 precursor ... 207 1e-53
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens] 159 6e-39
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ... 159 6e-39
gi|30425382 signal-regulatory protein delta [Homo sapiens] 123 3e-28
gi|239746419 PREDICTED: hypothetical protein XP_002344218 [Homo ... 117 3e-26
gi|239751925 PREDICTED: similar to signal-regulatory protein alp... 104 2e-22
gi|198386341 signal-regulatory protein beta 2 isoform 2 [Homo sa... 99 1e-20
gi|171906611 signal-regulatory protein beta 2 isoform 1 [Homo sa... 99 1e-20
gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens] 72 9e-13
gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens] 66 8e-11
gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens] 60 5e-09
gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po... 53 6e-07
gi|167857788 MHC class I polypeptide-related sequence B [Homo sa... 51 2e-06
gi|71274107 melanoma cell adhesion molecule [Homo sapiens] 50 5e-06
gi|4557751 MHC class I polypeptide-related sequence A [Homo sapi... 50 5e-06
gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Ho... 50 6e-06
gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Ho... 50 6e-06
gi|17986001 major histocompatibility complex, class I, B precurs... 49 8e-06
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 49 8e-06
gi|118572606 hemicentin 1 [Homo sapiens] 49 8e-06
>gi|18426911 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 1019 bits (2634), Expect = 0.0
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL 60
MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL
Sbjct: 1 MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL 60
Query: 61 IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY 120
IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY
Sbjct: 61 IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY 120
Query: 121 CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI 180
CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI
Sbjct: 121 CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI 180
Query: 181 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL 240
TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL
Sbjct: 181 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL 240
Query: 241 RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 300
RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS
Sbjct: 241 RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 300
Query: 301 TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT 360
TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT
Sbjct: 301 TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT 360
Query: 361 AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI 420
AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI
Sbjct: 361 AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI 420
Query: 421 TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR 480
TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR
Sbjct: 421 TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR 480
Query: 481 TPKQPAPKPEPSFSEYASVQVPRK 504
TPKQPAPKPEPSFSEYASVQVPRK
Sbjct: 481 TPKQPAPKPEPSFSEYASVQVPRK 504
>gi|91105767 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 1019 bits (2634), Expect = 0.0
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL 60
MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL
Sbjct: 1 MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL 60
Query: 61 IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY 120
IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY
Sbjct: 61 IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY 120
Query: 121 CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI 180
CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI
Sbjct: 121 CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI 180
Query: 181 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL 240
TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL
Sbjct: 181 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL 240
Query: 241 RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 300
RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS
Sbjct: 241 RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 300
Query: 301 TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT 360
TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT
Sbjct: 301 TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT 360
Query: 361 AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI 420
AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI
Sbjct: 361 AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI 420
Query: 421 TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR 480
TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR
Sbjct: 421 TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR 480
Query: 481 TPKQPAPKPEPSFSEYASVQVPRK 504
TPKQPAPKPEPSFSEYASVQVPRK
Sbjct: 481 TPKQPAPKPEPSFSEYASVQVPRK 504
>gi|91105764 signal-regulatory protein alpha precursor [Homo
sapiens]
Length = 504
Score = 1019 bits (2634), Expect = 0.0
Identities = 504/504 (100%), Positives = 504/504 (100%)
Query: 1 MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL 60
MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL
Sbjct: 1 MEPAGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSL 60
Query: 61 IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY 120
IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY
Sbjct: 61 IPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYY 120
Query: 121 CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI 180
CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI
Sbjct: 121 CVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDI 180
Query: 181 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL 240
TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL
Sbjct: 181 TLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPL 240
Query: 241 RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 300
RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS
Sbjct: 241 RGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 300
Query: 301 TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT 360
TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT
Sbjct: 301 TVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNT 360
Query: 361 AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI 420
AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI
Sbjct: 361 AAENTGSNERNIYIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSSTRLHEPEKNAREI 420
Query: 421 TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR 480
TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR
Sbjct: 421 TQDTNDITYADLNLPKGKKPAPQAAEPNNHTEYASIQTSPQPASEDTLTYADLDMVHLNR 480
Query: 481 TPKQPAPKPEPSFSEYASVQVPRK 504
TPKQPAPKPEPSFSEYASVQVPRK
Sbjct: 481 TPKQPAPKPEPSFSEYASVQVPRK 504
>gi|209529703 signal-regulatory protein beta 1 isoform 3 precursor
[Homo sapiens]
Length = 398
Score = 665 bits (1716), Expect = 0.0
Identities = 325/336 (96%), Positives = 330/336 (98%)
Query: 26 SGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEG 85
+GVAGEEELQVIQPDKS+ VAAGE+ATL CT TSLIPVGPIQWFRGAGPGRELIYNQKEG
Sbjct: 25 TGVAGEEELQVIQPDKSISVAAGESATLHCTVTSLIPVGPIQWFRGAGPGRELIYNQKEG 84
Query: 86 HFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR 145
HFPRVTTVSDLTKRNNMDFSIRI NITPADAGTYYCVKFRKGSPD VEFKSGAGTELSVR
Sbjct: 85 HFPRVTTVSDLTKRNNMDFSIRISNITPADAGTYYCVKFRKGSPDHVEFKSGAGTELSVR 144
Query: 146 AKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESV 205
AKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP G+SV
Sbjct: 145 AKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPAGDSV 204
Query: 206 SYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRA 265
SYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRA
Sbjct: 205 SYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRA 264
Query: 266 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRD 325
ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAST+TENKDGTYNWMSWLLVNVSAHRD
Sbjct: 265 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTLTENKDGTYNWMSWLLVNVSAHRD 324
Query: 326 DVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 361
DVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA
Sbjct: 325 DVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 360
>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
[Homo sapiens]
Length = 398
Score = 609 bits (1570), Expect = e-174
Identities = 298/368 (80%), Positives = 327/368 (88%)
Query: 26 SGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEG 85
+GVAGE+ELQVIQP+KSV VAAGE+ATLRC TSLIPVGPI WFRGAG GRELIYNQKEG
Sbjct: 25 TGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEG 84
Query: 86 HFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR 145
HFPRVTTVS+LTKRNN+DFSI I NITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR
Sbjct: 85 HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR 144
Query: 146 AKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESV 205
AKPSAPVVSGPA RATP+HTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP G+SV
Sbjct: 145 AKPSAPVVSGPAVRATPEHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPAGDSV 204
Query: 206 SYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRA 265
SYSIHSTA+VVLTR DVHSQVICE+AH+TLQGDPLRGTANLSE IRVPPTLEVTQQP+RA
Sbjct: 205 SYSIHSTARVVLTRGDVHSQVICEIAHITLQGDPLRGTANLSEAIRVPPTLEVTQQPMRA 264
Query: 266 ENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRD 325
ENQ NVTCQV FYP+ LQLTWLENGNVSRTETAST+ ENKDGTYNWMSWLLVN AHRD
Sbjct: 265 ENQANVTCQVSNFYPRGLQLTWLENGNVSRTETASTLIENKDGTYNWMSWLLVNTCAHRD 324
Query: 326 DVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAAENTGSNERNIYIVVGVVCTLLVA 385
DV LTCQVEHDGQ AVSKS+ L++SAH KE GS+ E + + + + + LL+
Sbjct: 325 DVVLTCQVEHDGQQAVSKSYALEISAHQKEHGSDITHEAALAPTAPLLVALLLGPKLLLV 384
Query: 386 LLMAALYL 393
+ ++A+Y+
Sbjct: 385 VGVSAIYI 392
>gi|94538335 signal-regulatory protein gamma isoform 1 precursor
[Homo sapiens]
Length = 387
Score = 562 bits (1448), Expect = e-160
Identities = 280/382 (73%), Positives = 312/382 (81%), Gaps = 12/382 (3%)
Query: 12 GPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRG 71
GP L L L + VAGEEELQ+IQP+K +LV G+TATL CT TSL+PVGP+ WFRG
Sbjct: 12 GPFLLLTLLLGL--TEVAGEEELQMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRG 69
Query: 72 AGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDD 131
GPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRI +ITPAD GTYYCVKFRKGSP++
Sbjct: 70 VGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRISSITPADVGTYYCVKFRKGSPEN 129
Query: 132 VEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL 191
VEFKSG GTE+++ AKPSAPVV GPAAR TP+HTVSFTCESHGFSPRDITLKWFKNGNEL
Sbjct: 130 VEFKSGPGTEMALGAKPSAPVVLGPAARTTPEHTVSFTCESHGFSPRDITLKWFKNGNEL 189
Query: 192 SDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIR 251
SDFQTNVDP G+SV+YSI STA+VVL DV SQVICEVAHVTLQGDPLRGTANLSE IR
Sbjct: 190 SDFQTNVDPTGQSVAYSIRSTARVVLDPWDVRSQVICEVAHVTLQGDPLRGTANLSEAIR 249
Query: 252 VPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYN 311
VPPTLEVTQQP+R NQVNVTCQVRKFYPQ LQLTW ENGNV + ETAST+TENKDGTYN
Sbjct: 250 VPPTLEVTQQPMRVGNQVNVTCQVRKFYPQSLQLTWSENGNVCQRETASTLTENKDGTYN 309
Query: 312 WMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAAENTGSNERN 371
W SW LVN+S RDDV LTCQV+HDGQ AVSK L+V+ H K+Q S+ S
Sbjct: 310 WTSWFLVNISDQRDDVVLTCQVKHDGQLAVSKRLALEVTVHQKDQSSDATPGPASS---- 365
Query: 372 IYIVVGVVCTLLVALLMAALYL 393
+ LL+A+L+ +Y+
Sbjct: 366 ------LTALLLIAVLLGPIYV 381
>gi|94538339 signal-regulatory protein gamma isoform 3 precursor
[Homo sapiens]
Length = 276
Score = 394 bits (1013), Expect = e-110
Identities = 194/242 (80%), Positives = 211/242 (87%), Gaps = 2/242 (0%)
Query: 12 GPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRG 71
GP L L L + VAGEEELQ+IQP+K +LV G+TATL CT TSL+PVGP+ WFRG
Sbjct: 12 GPFLLLTLLLGL--TEVAGEEELQMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRG 69
Query: 72 AGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDD 131
GPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRI +ITPAD GTYYCVKFRKGSP++
Sbjct: 70 VGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRISSITPADVGTYYCVKFRKGSPEN 129
Query: 132 VEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL 191
VEFKSG GTE+++ AKPSAPVV GPAAR TP+HTVSFTCESHGFSPRDITLKWFKNGNEL
Sbjct: 130 VEFKSGPGTEMALGAKPSAPVVLGPAARTTPEHTVSFTCESHGFSPRDITLKWFKNGNEL 189
Query: 192 SDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIR 251
SDFQTNVDP G+SV+YSI STA+VVL DV SQVICEVAHVTLQGDPLRGTANLSE IR
Sbjct: 190 SDFQTNVDPTGQSVAYSIRSTARVVLDPWDVRSQVICEVAHVTLQGDPLRGTANLSEAIR 249
Query: 252 VP 253
P
Sbjct: 250 GP 251
Score = 29.6 bits (65), Expect = 6.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 266 ENQVNVTCQVRKFYPQRLQLTWLENGN 292
E+ V+ TC+ F P+ + L W +NGN
Sbjct: 161 EHTVSFTCESHGFSPRDITLKWFKNGN 187
>gi|239751927 PREDICTED: similar to signal-regulatory protein beta 1
[Homo sapiens]
Length = 136
Score = 230 bits (586), Expect = 3e-60
Identities = 111/131 (84%), Positives = 120/131 (91%)
Query: 19 LAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGREL 78
+ A C++ GVAGE+ELQVIQP+KSV VAAGE+ATLRC TSLIPVGPI WFRGAG GREL
Sbjct: 1 MTALCSFPGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGREL 60
Query: 79 IYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGA 138
IYNQKEGHFPRVTTVS+LTKRNN+DFSI I NITPADAGTYYCVKFRKGSPDDVEFKSGA
Sbjct: 61 IYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGA 120
Query: 139 GTELSVRAKPS 149
GTELSVRA P+
Sbjct: 121 GTELSVRADPA 131
>gi|169217521 PREDICTED: similar to signal-regulatory protein beta 1
[Homo sapiens]
Length = 160
Score = 226 bits (577), Expect = 3e-59
Identities = 110/131 (83%), Positives = 119/131 (90%)
Query: 19 LAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGREL 78
+ A C++ GVAGE+ELQVIQP+KSV VAAGE+ATLRC TSLIPVGPI WFRGAG GREL
Sbjct: 1 MTALCSFPGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGREL 60
Query: 79 IYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGA 138
IYNQKEGHFPRVTTVS+LTKRNN+DFSI I NITPADAGTYYCVKFRKGSPDDVEFKSGA
Sbjct: 61 IYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGA 120
Query: 139 GTELSVRAKPS 149
GTELSVR + S
Sbjct: 121 GTELSVRGEYS 131
>gi|144953878 signal-regulatory protein beta 1 isoform 2 precursor
[Homo sapiens]
Length = 181
Score = 223 bits (568), Expect = 3e-58
Identities = 109/126 (86%), Positives = 115/126 (91%)
Query: 26 SGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEG 85
+GVAGE+ELQVIQP+KSV VAAGE+ATLRC TSLIPVGPI WFRGAG GRELIYNQKEG
Sbjct: 25 TGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEG 84
Query: 86 HFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR 145
HFPRVTTVS+LTKRNN+DFSI I NITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR
Sbjct: 85 HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR 144
Query: 146 AKPSAP 151
AP
Sbjct: 145 EAALAP 150
>gi|94538337 signal-regulatory protein gamma isoform 2 precursor
[Homo sapiens]
Length = 170
Score = 207 bits (528), Expect = 1e-53
Identities = 101/139 (72%), Positives = 115/139 (82%), Gaps = 2/139 (1%)
Query: 12 GPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRG 71
GP L L L + VAGEEELQ+IQP+K +LV G+TATL CT TSL+PVGP+ WFRG
Sbjct: 12 GPFLLLTLLLGL--TEVAGEEELQMIQPEKLLLVTVGKTATLHCTVTSLLPVGPVLWFRG 69
Query: 72 AGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDD 131
GPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRI +ITPAD GTYYCVKFRKGSP++
Sbjct: 70 VGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRISSITPADVGTYYCVKFRKGSPEN 129
Query: 132 VEFKSGAGTELSVRAKPSA 150
VEFKSG GTE+++ S+
Sbjct: 130 VEFKSGPGTEMALGGPASS 148
>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
Length = 651
Score = 159 bits (402), Expect = 6e-39
Identities = 80/118 (67%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Query: 28 VAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEGHF 87
VAGEE LQVIQP+ V VAAGE ATL CT TSL+PVGPIQWFRGA PG++LIY+ K H
Sbjct: 510 VAGEE-LQVIQPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGACPGQKLIYSPKRCHS 568
Query: 88 PRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR 145
PRVTT+SD KRN+ D+SIRI +IT DAGTYYC+K R+ P +VE KSG GT++SVR
Sbjct: 569 PRVTTISDQRKRNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSVR 626
Score = 115 bits (289), Expect = 7e-26
Identities = 71/149 (47%), Positives = 85/149 (57%), Gaps = 34/149 (22%)
Query: 1 MEPAGPAPGRLGPLLCLLLAASCAW-----SGVAGEEELQVIQPDKSVLVAAGETATLRC 55
ME G P R L L AA A+ +G AGEEELQVIQP+K
Sbjct: 388 MEHEGQPPKRAN--LVLSTAAHTAYKPIGSTGAAGEEELQVIQPEK-------------- 431
Query: 56 TATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPAD 115
WF+G G+ELIY+ K GHFP++ +SD+TKRNN DFS+ I +IT A+
Sbjct: 432 ------------WFKGTETGQELIYSSKGGHFPKIACISDITKRNNTDFSMCITSITRAN 479
Query: 116 AGTYYCVKFRKGSPDDVEFKSGAGTELSV 144
GTY CVKF KG P D+E KSG GTELSV
Sbjct: 480 TGTYNCVKFWKGGP-DMELKSGPGTELSV 507
Score = 105 bits (261), Expect = 1e-22
Identities = 76/236 (32%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 153 VSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHST 212
+ GP R+ P + T S GFS +T+ W KN +EL + QT+V G +Y++ S+
Sbjct: 188 LQGPLQRSEPGTRIRLTYASSGFSTHQVTVTWLKNKHELPNPQTSVQYSGH--TYNVTSS 245
Query: 213 AKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL-----------EVTQQ 261
V L +DV S V+C V H + T L + +R P T+ T
Sbjct: 246 VLVPLMDDDVFSHVVCHVEHKLTWF--FQKTTGLDQYLREPMTVVWRAPYPALFSTGTTP 303
Query: 262 PVRAENQ-------------VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDG 308
RA V VTC V++FYPQ + L WLE+ + + T+ +N D
Sbjct: 304 VTRASTPGVFHSQVLLFSCLVAVTCLVQRFYPQNVHLAWLEDCHTLKGTEQPTLKKNNDR 363
Query: 309 TYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHP--KEQGSNTAA 362
+Y LLVN S + LTC +EH+GQP + L +AH K GS AA
Sbjct: 364 SYTLEKLLLVNASVQGPERVLTCMMEHEGQPPKRANLVLSTAAHTAYKPIGSTGAA 419
Score = 59.3 bits (142), Expect = 8e-09
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 153 VSGPAARATPQHTVSFTCESHGFSP----RDITLKWFKNGNELSDFQTNVDPVGESVSYS 208
++GP+ R +P +V F C + F+ RD + W K+ +E + P +
Sbjct: 29 LTGPSHRTSPGDSVPFNCTAVPFNSQDFSRDFNVTWLKDSDEHPASAQRLVPDNGGNDF- 87
Query: 209 IHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPP---TLEVTQQPVRA 265
I S A V LTR+DV S++ CEV H L +PL+ T NLS+ R P +LE T Q
Sbjct: 88 ITSKAWVTLTRQDVSSEITCEVTHRAL-AEPLKTTMNLSQATRNPDGTYSLEHTWQAEAT 146
Query: 266 ENQVNVTCQV 275
+ C V
Sbjct: 147 LEEREFACWV 156
>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
sapiens]
Length = 651
Score = 159 bits (402), Expect = 6e-39
Identities = 80/118 (67%), Positives = 94/118 (79%), Gaps = 1/118 (0%)
Query: 28 VAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEGHF 87
VAGEE LQVIQP+ V VAAGE ATL CT TSL+PVGPIQWFRGA PG++LIY+ K H
Sbjct: 510 VAGEE-LQVIQPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGACPGQKLIYSPKRCHS 568
Query: 88 PRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVR 145
PRVTT+SD KRN+ D+SIRI +IT DAGTYYC+K R+ P +VE KSG GT++SVR
Sbjct: 569 PRVTTISDQRKRNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSVR 626
Score = 115 bits (289), Expect = 7e-26
Identities = 71/149 (47%), Positives = 85/149 (57%), Gaps = 34/149 (22%)
Query: 1 MEPAGPAPGRLGPLLCLLLAASCAW-----SGVAGEEELQVIQPDKSVLVAAGETATLRC 55
ME G P R L L AA A+ +G AGEEELQVIQP+K
Sbjct: 388 MEHEGQPPKRAN--LVLSTAAHTAYKPIGSTGAAGEEELQVIQPEK-------------- 431
Query: 56 TATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPAD 115
WF+G G+ELIY+ K GHFP++ +SD+TKRNN DFS+ I +IT A+
Sbjct: 432 ------------WFKGTETGQELIYSSKGGHFPKIACISDITKRNNTDFSMCITSITRAN 479
Query: 116 AGTYYCVKFRKGSPDDVEFKSGAGTELSV 144
GTY CVKF KG P D+E KSG GTELSV
Sbjct: 480 TGTYNCVKFWKGGP-DMELKSGPGTELSV 507
Score = 105 bits (261), Expect = 1e-22
Identities = 76/236 (32%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 153 VSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHST 212
+ GP R+ P + T S GFS +T+ W KN +EL + QT+V G +Y++ S+
Sbjct: 188 LQGPLQRSEPGTRIRLTYASSGFSTHQVTVTWLKNKHELPNPQTSVQYSGH--TYNVTSS 245
Query: 213 AKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL-----------EVTQQ 261
V L +DV S V+C V H + T L + +R P T+ T
Sbjct: 246 VLVPLMDDDVFSHVVCHVEHKLTWF--FQKTTGLDQYLREPMTVVWRAPYPALFSTGTTP 303
Query: 262 PVRAENQ-------------VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDG 308
RA V VTC V++FYPQ + L WLE+ + + T+ +N D
Sbjct: 304 VTRASTPGVFHSQVLLFSCLVAVTCLVQRFYPQNVHLAWLEDCHTLKGTEQPTLKKNNDR 363
Query: 309 TYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHP--KEQGSNTAA 362
+Y LLVN S + LTC +EH+GQP + L +AH K GS AA
Sbjct: 364 SYTLEKLLLVNASVQGPERVLTCMMEHEGQPPKRANLVLSTAAHTAYKPIGSTGAA 419
Score = 59.3 bits (142), Expect = 8e-09
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 153 VSGPAARATPQHTVSFTCESHGFSP----RDITLKWFKNGNELSDFQTNVDPVGESVSYS 208
++GP+ R +P +V F C + F+ RD + W K+ +E + P +
Sbjct: 29 LTGPSHRTSPGDSVPFNCTAVPFNSQDFSRDFNVTWLKDSDEHPASAQRLVPDNGGNDF- 87
Query: 209 IHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPP---TLEVTQQPVRA 265
I S A V LTR+DV S++ CEV H L +PL+ T NLS+ R P +LE T Q
Sbjct: 88 ITSKAWVTLTRQDVSSEITCEVTHRAL-AEPLKTTMNLSQATRNPDGTYSLEHTWQAEAT 146
Query: 266 ENQVNVTCQV 275
+ C V
Sbjct: 147 LEEREFACWV 156
>gi|30425382 signal-regulatory protein delta [Homo sapiens]
Length = 197
Score = 123 bits (309), Expect = 3e-28
Identities = 74/168 (44%), Positives = 96/168 (57%), Gaps = 4/168 (2%)
Query: 6 PAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGP 65
PA PL LLL +GV +Q Q + S V+ GE+ L C+ +P GP
Sbjct: 4 PASPLHPPLPSLLLYLLLELAGVTHVFHVQ--QTEMSQTVSTGESIILSCSVPDTLPNGP 61
Query: 66 IQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFR 125
+ WF+G GP R+LIYN K+G+FPRV + D TK N DFS RI I+ ADAGTYYCVKF
Sbjct: 62 VLWFKGTGPNRKLIYNFKQGNFPRVKEIGDTTKPGNTDFSTRIREISLADAGTYYCVKFI 121
Query: 126 KGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARA-TPQHTVSFTCES 172
KG E++SG GT++ V + P + PA RA + H + TC S
Sbjct: 122 KGRAIK-EYQSGRGTQVFVTEQNPRPPKNRPAGRAGSRAHHDAHTCLS 168
>gi|239746419 PREDICTED: hypothetical protein XP_002344218 [Homo
sapiens]
Length = 532
Score = 117 bits (292), Expect = 3e-26
Identities = 72/161 (44%), Positives = 91/161 (56%), Gaps = 34/161 (21%)
Query: 1 MEPAGPAPGRLGPLLCLLLAASCAW-----SGVAGEEELQVIQPDKSVLVAAGETATLRC 55
ME G P R L L AA A+ +G AGEEEL+VIQP+K
Sbjct: 388 MEHEGQPPKRAN--LVLSTAAHTAYKPIGSTGAAGEEELRVIQPEK-------------- 431
Query: 56 TATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPAD 115
WF+G G+ELIY+ K GHFP++ +SD+TKRNN DFS+ I +IT A+
Sbjct: 432 ------------WFKGTETGQELIYSSKGGHFPKIACISDITKRNNTDFSMCITSITRAN 479
Query: 116 AGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGP 156
GTY CVKF KG P D+E KSG GTELSV ++ S ++ P
Sbjct: 480 TGTYNCVKFWKGGP-DMELKSGPGTELSVHSEYSVGLLRPP 519
Score = 103 bits (257), Expect = 4e-22
Identities = 75/236 (31%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 153 VSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHST 212
+ GP R+ P + T S GFS +T+ W KN +EL + QT+V G +Y++ S+
Sbjct: 188 LQGPLQRSEPGTRIRLTYASSGFSTHQVTVTWLKNKHELPNPQTSVQYSGH--TYNVTSS 245
Query: 213 AKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL-----------EVTQQ 261
V L +DV S V+C V H + T L + ++ P T+ T
Sbjct: 246 VLVPLMDDDVFSHVVCHVEHKLTWF--FQKTTGLDQYLQEPMTVVWRAPYPALFSTGTTP 303
Query: 262 PVRAENQ-------------VNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDG 308
RA V VTC V++FYPQ + L WLE+ + + T+ +N D
Sbjct: 304 VTRASTPGVFHSQVLLFSCLVAVTCLVQRFYPQNVHLAWLEDCHTLKGTEQPTLKKNNDR 363
Query: 309 TYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHP--KEQGSNTAA 362
+Y LLVN S + LTC +EH+GQP + L +AH K GS AA
Sbjct: 364 SYTLEKLLLVNASVQGPERVLTCMMEHEGQPPKRANLVLSTAAHTAYKPIGSTGAA 419
Score = 59.3 bits (142), Expect = 8e-09
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 153 VSGPAARATPQHTVSFTCESHGFSP----RDITLKWFKNGNELSDFQTNVDPVGESVSYS 208
++GP+ R +P +V F C + F+ RD + W K+ +E + P +
Sbjct: 29 LTGPSHRTSPGDSVPFNCTAVPFNSQDFSRDFNVTWLKDSDEHPASAQRLVPDNGGNDF- 87
Query: 209 IHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPP---TLEVTQQPVRA 265
I S A V LTR+DV S++ CEV H L +PL+ T NLS+ R P +LE T Q
Sbjct: 88 ITSKAWVTLTRQDVSSEITCEVTHRAL-AEPLKTTMNLSQATRNPDGTYSLEHTWQAEAT 146
Query: 266 ENQVNVTCQV 275
+ C V
Sbjct: 147 LEEREFACWV 156
>gi|239751925 PREDICTED: similar to signal-regulatory protein alpha
[Homo sapiens]
Length = 87
Score = 104 bits (259), Expect = 2e-22
Identities = 49/49 (100%), Positives = 49/49 (100%)
Query: 313 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 361
MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA
Sbjct: 1 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTA 49
>gi|198386341 signal-regulatory protein beta 2 isoform 2 [Homo
sapiens]
Length = 244
Score = 98.6 bits (244), Expect = 1e-20
Identities = 58/136 (42%), Positives = 78/136 (57%), Gaps = 10/136 (7%)
Query: 31 EEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRV 90
E +L +IQP + VL G+T L CT P GPI+WF+GAG RE IYN P+
Sbjct: 58 EPDLWIIQPQELVLGTTGDTVFLNCTVLGDGPPGPIRWFQGAGLSREAIYNFGGISHPKE 117
Query: 91 TTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS- 149
T V + +N DFSI + N++ DAGTYYCVKF++ + ++ SG GT L V+AK +
Sbjct: 118 TAV----QASNNDFSILLQNVSSEDAGTYYCVKFQR--KPNRQYLSGQGTSLKVKAKSTS 171
Query: 150 ---APVVSGPAARATP 162
A S PA +P
Sbjct: 172 SKEAEFTSEPATEMSP 187
>gi|171906611 signal-regulatory protein beta 2 isoform 1 [Homo
sapiens]
Length = 342
Score = 98.6 bits (244), Expect = 1e-20
Identities = 58/136 (42%), Positives = 78/136 (57%), Gaps = 10/136 (7%)
Query: 31 EEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRV 90
E +L +IQP + VL G+T L CT P GPI+WF+GAG RE IYN P+
Sbjct: 156 EPDLWIIQPQELVLGTTGDTVFLNCTVLGDGPPGPIRWFQGAGLSREAIYNFGGISHPKE 215
Query: 91 TTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS- 149
T V + +N DFSI + N++ DAGTYYCVKF++ + ++ SG GT L V+AK +
Sbjct: 216 TAV----QASNNDFSILLQNVSSEDAGTYYCVKFQR--KPNRQYLSGQGTSLKVKAKSTS 269
Query: 150 ---APVVSGPAARATP 162
A S PA +P
Sbjct: 270 SKEAEFTSEPATEMSP 285
Score = 85.1 bits (209), Expect = 1e-16
Identities = 62/179 (34%), Positives = 87/179 (48%), Gaps = 9/179 (5%)
Query: 14 LLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAG 73
LL L+L S A SG + + QV+QP+ +LVA GET LRC G I+W + +
Sbjct: 20 LLALVLVPSDA-SGQSSRNDWQVLQPEGPMLVAEGETLLLRCMVVGSCTDGMIKWVKVST 78
Query: 74 PGRELIYNQKEGHFPRVTTVSDLTKRN-NMDFSIRIGNITPADAGTYYCVKFRKGSPDDV 132
++ IYN K G FP V + T N D+SI I N+T GTY+CV+F G +
Sbjct: 79 QDQQEIYNFKRGSFPGVMPMIQRTSEPLNCDYSIYIHNVTREHTGTYHCVRF-DGLSEHS 137
Query: 133 EFKSGAGTELSVRA----KPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFK 186
E KS GT + V+ +P ++ T TV C G P ++WF+
Sbjct: 138 EMKSDEGTSVLVKGAGDPEPDLWIIQPQELVLGTTGDTVFLNCTVLGDGPPG-PIRWFQ 195
>gi|187608363 cell adhesion molecule 3 isoform 2 [Homo sapiens]
Length = 398
Score = 72.4 bits (176), Expect = 9e-13
Identities = 71/281 (25%), Positives = 113/281 (40%), Gaps = 16/281 (5%)
Query: 14 LLCLLLAASCAWSGVAGEEELQVIQPDKS-VLVAAGETATLRCTATSLIPVGPIQWFRGA 72
LL LLL +C W+ QP S V AG T L+C +QW +
Sbjct: 8 LLLLLLLFACCWAPGGANLSQDDSQPWTSDETVVAGGTVVLKCQVKDHED-SSLQW---S 63
Query: 73 GPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDV 132
P ++ +Y ++ R + +T + + SI I N+ AD G Y C F V
Sbjct: 64 NPAQQTLYFGEKRAL-RDNRIQLVTSTPH-ELSISISNVALADEGEYTCSIFTM----PV 117
Query: 133 EFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS 192
T L + P P+++G + + T + C+S G P L W K EL
Sbjct: 118 RTAKSLVTVLGI---PQKPIITGYKSSLREKDTATLNCQSSGSKPA-ARLTWRKGDQELH 173
Query: 193 DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRV 252
T + ++++ S+ +TRED + ++C V H +L+G R T+ E +
Sbjct: 174 GEPTRIQEDPNGKTFTVSSSVTFQVTREDDGASIVCSVNHESLKGAD-RSTSQRIEVLYT 232
Query: 253 PPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNV 293
P + P E Q + + P Q W + G+V
Sbjct: 233 PTAMIRPDPPHPREGQKLLLHCEGRGNPVPQQYLWEKEGSV 273
Score = 29.6 bits (65), Expect = 6.7
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 239 PLRGTANLSETIRVP--PTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT 296
P+R +L + +P P + + +R ++ + CQ P +LTW +
Sbjct: 116 PVRTAKSLVTVLGIPQKPIITGYKSSLREKDTATLNCQSSGSKPAA-RLTWRKGDQELHG 174
Query: 297 ETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV 349
E + T+ S + V+ D + C V H+ +S ++
Sbjct: 175 EPTRIQEDPNGKTFTVSSSVTFQVTREDDGASIVCSVNHESLKGADRSTSQRI 227
>gi|11056046 cell adhesion molecule 3 isoform 1 [Homo sapiens]
Length = 432
Score = 65.9 bits (159), Expect = 8e-11
Identities = 66/275 (24%), Positives = 113/275 (41%), Gaps = 19/275 (6%)
Query: 21 ASCAWSG--VAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGREL 78
+S WS + ++ Q D++V+ AG T L+C +QW + P ++
Sbjct: 50 SSTVWSSPDMLASQDSQPWTSDETVV--AGGTVVLKCQVKDHED-SSLQW---SNPAQQT 103
Query: 79 IYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGA 138
+Y ++ R + +T + + SI I N+ AD G Y C F V
Sbjct: 104 LYFGEKRAL-RDNRIQLVTSTPH-ELSISISNVALADEGEYTCSIFTM----PVRTAKSL 157
Query: 139 GTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNV 198
T L + P P+++G + + T + C+S G P L W K EL T +
Sbjct: 158 VTVLGI---PQKPIITGYKSSLREKDTATLNCQSSGSKPA-ARLTWRKGDQELHGEPTRI 213
Query: 199 DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV 258
++++ S+ +TRED + ++C V H +L+G R T+ E + P +
Sbjct: 214 QEDPNGKTFTVSSSVTFQVTREDDGASIVCSVNHESLKGAD-RSTSQRIEVLYTPTAMIR 272
Query: 259 TQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNV 293
P E Q + + P Q W + G+V
Sbjct: 273 PDPPHPREGQKLLLHCEGRGNPVPQQYLWEKEGSV 307
Score = 29.6 bits (65), Expect = 6.7
Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 239 PLRGTANLSETIRVP--PTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT 296
P+R +L + +P P + + +R ++ + CQ P +LTW +
Sbjct: 150 PVRTAKSLVTVLGIPQKPIITGYKSSLREKDTATLNCQSSGSKPAA-RLTWRKGDQELHG 208
Query: 297 ETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKV 349
E + T+ S + V+ D + C V H+ +S ++
Sbjct: 209 EPTRIQEDPNGKTFTVSSSVTFQVTREDDGASIVCSVNHESLKGADRSTSQRI 261
>gi|54607031 immunoglobulin superfamily, member 4D [Homo sapiens]
Length = 437
Score = 60.1 bits (144), Expect = 5e-09
Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 19/253 (7%)
Query: 41 KSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIY--NQKEGHFPRVTTVSDLTK 98
++V V G TA L C +QW + P ++ +Y ++K R+ +L +
Sbjct: 32 QNVTVVEGGTAILTCRVDQNDNTS-LQW---SNPAQQTLYFDDKKALRDNRI----ELVR 83
Query: 99 RNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAA 158
+ + SI + +++ +D G Y C F + L+V P P +SG ++
Sbjct: 84 ASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAY-------LTVLGVPEKPQISGFSS 136
Query: 159 RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLT 218
+ TC++ G P ++WFKN E+ D + + ++++ ST +
Sbjct: 137 PVMEGDLMQLTCKTSGSKPA-ADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVD 195
Query: 219 REDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKF 278
R D VIC V H +L P + + E P + P E Q + K
Sbjct: 196 RSDDGVAVICRVDHESLNATP-QVAMQVLEIHYTPSVKIIPSTPFPQEGQPLILTCESKG 254
Query: 279 YPQRLQLTWLENG 291
P + W ++G
Sbjct: 255 KPLPEPVLWTKDG 267
>gi|239752604 PREDICTED: similar to immunoglobulin lambda-like
polypeptide 1 [Homo sapiens]
Length = 490
Score = 53.1 bits (126), Expect = 6e-07
Identities = 63/241 (26%), Positives = 97/241 (40%), Gaps = 33/241 (13%)
Query: 118 TYYCVKFRKGSPDDVEFKSGAGTELSVRAKPS-APVVSGPAARATP---------QHTVS 167
TY C K P + + + V P AP V+GP+ P T
Sbjct: 244 TYTCNVDHK--PSNTKVDKTVERKCCVECPPCPAPPVAGPSVFLFPPKPKDTLMISRTPE 301
Query: 168 FTCESHGFSPRD--ITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 225
TC S D + W+ +G E+ + +T P E +ST +VV VH
Sbjct: 302 VTCVVVDVSHEDPEVQFNWYVDGMEVHNAKTK--PREEQ----FNSTFRVVSVLTVVHQD 355
Query: 226 VI------CEVAHVTLQGDPLRGTANLSETIRVPPTLEV-TQQPVRAE---NQVNVTCQV 275
+ C+V++ +G P +S+T P +V T P R E NQV++TC V
Sbjct: 356 WLNGKEYKCKVSN---KGLPAPIEKTISKTKGQPREPQVYTLPPSREEMTKNQVSLTCLV 412
Query: 276 RKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEH 335
+ FYP + + W NG + + DG++ S L V+ S + +C V H
Sbjct: 413 KGFYPSDIAVEWESNGQPENNYKTTPPMLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH 472
Query: 336 D 336
+
Sbjct: 473 E 473
Score = 46.2 bits (108), Expect = 7e-05
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 119 YYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSG--PAARATPQHTVSFTCESHGFS 176
Y C KG P +E T + +P P V P+ ++ VS TC GF
Sbjct: 362 YKCKVSNKGLPAPIE-----KTISKTKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFY 416
Query: 177 PRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ 236
P DI ++W NG ++++T + S+ ++S V +R + C V H L
Sbjct: 417 PSDIAVEWESNGQPENNYKTTPPMLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 476
Query: 237 GDPLRGTANLS 247
+ + +LS
Sbjct: 477 NHYTQKSLSLS 487
Score = 35.0 bits (79), Expect = 0.16
Identities = 49/241 (20%), Positives = 82/241 (34%), Gaps = 28/241 (11%)
Query: 135 KSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF 194
+S T L+ K + P +R+T + T + C + P +T+ W +G S
Sbjct: 156 RSHGTTSLAASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSW-NSGALTSGV 214
Query: 195 QTNVDPVGESVSYSIHSTAKVVL------------------TREDVHSQVICEVAHVTLQ 236
T + S YS+ S V T+ D + C V
Sbjct: 215 HTFPAVLQSSGLYSLSSVVTVTSSNFGTQTYTCNVDHKPSNTKVDKTVERKCCVECPPCP 274
Query: 237 GDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ--RLQLTWLENGNVS 294
P+ G + + TL +++ P VTC V + +Q W +G
Sbjct: 275 APPVAGPSVFLFPPKPKDTLMISRTP-------EVTCVVVDVSHEDPEVQFNWYVDGMEV 327
Query: 295 RTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPK 354
E + T+ +S L V + + C+V + G PA + K P+
Sbjct: 328 HNAKTKPREEQFNSTFRVVSVLTVVHQDWLNGKEYKCKVSNKGLPAPIEKTISKTKGQPR 387
Query: 355 E 355
E
Sbjct: 388 E 388
>gi|167857788 MHC class I polypeptide-related sequence B [Homo
sapiens]
Length = 383
Score = 51.2 bits (121), Expect = 2e-06
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 252 VPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYN 311
VPP + VT V +E + VTC+ FYP+ + LTW ++G T DG
Sbjct: 205 VPPMVNVTCSEV-SEGNITVTCRASSFYPRNITLTWRQDGVSLSHNTQQWGDVLPDGNGT 263
Query: 312 WMSWLLVNVSAHRDDVKLTCQVEHDG 337
+ +W+ + ++ + TC +EH G
Sbjct: 264 YQTWVATRI-RQGEEQRFTCYMEHSG 288
Score = 31.2 bits (69), Expect = 2.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 144 VRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS 192
V + + P + + ++ TC + F PR+ITL W ++G LS
Sbjct: 199 VAIRRTVPPMVNVTCSEVSEGNITVTCRASSFYPRNITLTWRQDGVSLS 247
>gi|71274107 melanoma cell adhesion molecule [Homo sapiens]
Length = 646
Score = 50.1 bits (118), Expect = 5e-06
Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 35/259 (13%)
Query: 14 LLCLLLAASCAW----SGVAGEEELQVIQPDKSVL-VAAGETATLRC-TATSLIPVGPIQ 67
L+C L A+C +GV GE E QP ++ V G TA L+C + S + +
Sbjct: 6 LVCAFLLAACCCCPRVAGVPGEAE----QPAPELVEVEVGSTALLKCGLSQSQGNLSHVD 61
Query: 68 WFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMD---FSIRIGNITPADAGTYYCVKF 124
WF R LI+ ++G + + +R ++ ++ + +TP D + C
Sbjct: 62 WFSVHKEKRTLIFRVRQGQGQ--SEPGEYEQRLSLQDRGATLALTQVTPQDERIFLCQGK 119
Query: 125 RKGSPDDVEFKSGAGTELSVRAKPSAPVVSG-----PAARATPQHTVSFTCESHGFSPRD 179
R P E++ +L V P P + P P+ TC P
Sbjct: 120 R---PRSQEYR----IQLRVYKAPEEPNIQVNPLGIPVNSKEPEEVA--TCVGRNGYPIP 170
Query: 180 ITLKWFKNGNELSDFQTNV-----DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVT 234
+ W+KNG L + + V V S Y++ S K L +ED +Q CE+ +
Sbjct: 171 QVI-WYKNGRPLKEEKNRVHIQSSQTVESSGLYTLQSILKAQLVKEDKDAQFYCELNYRL 229
Query: 235 LQGDPLRGTANLSETIRVP 253
G+ ++ + ++ + P
Sbjct: 230 PSGNHMKESREVTVPVFYP 248
Score = 29.6 bits (65), Expect = 6.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 350 SAHPKEQGSNTAAENTGSNERNIYIVVGVVCTLLVALLMAALYLV 394
S H + ++T + R + IV +VC L++A+L A LY +
Sbjct: 538 SPHTRANSTSTERKLPEPESRGVVIVAVIVCILVLAVLGAVLYFL 582
>gi|4557751 MHC class I polypeptide-related sequence A [Homo
sapiens]
Length = 383
Score = 50.1 bits (118), Expect = 5e-06
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 222 VHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQ 281
+H+ + E+ G LR T VPP + VT+ +E + VTC+ FYP
Sbjct: 183 MHADCLQELRRYLKSGVVLRRT--------VPPMVNVTRSEA-SEGNITVTCRASGFYPW 233
Query: 282 RLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDG 337
+ L+W ++G +T DG + +W+ + ++ + TC +EH G
Sbjct: 234 NITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRI-CQGEEQRFTCYMEHSG 288
Score = 30.8 bits (68), Expect = 3.0
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 151 PVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS 192
P+V+ + A+ + ++ TC + GF P +ITL W ++G LS
Sbjct: 207 PMVNVTRSEAS-EGNITVTCRASGFYPWNITLSWRQDGVSLS 247
>gi|148664211 immunoglobulin superfamily, member 4D isoform 2 [Homo
sapiens]
Length = 414
Score = 49.7 bits (117), Expect = 6e-06
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 26/288 (9%)
Query: 4 AGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPV 63
A AP L L LLL ++ A + L K V V GE AT+ C
Sbjct: 17 AAAAPPGLRLRLLLLLFSAAALIPTGDGQNLFT----KDVTVIEGEVATISCQVNK---- 68
Query: 64 GPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVK 123
+ P R+ IY + P + L ++ + + + N++ +D G Y+C
Sbjct: 69 SDDSVIQLLNPNRQTIYFRD--FRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQL 126
Query: 124 FRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK 183
+ + T ++V P ++ A + C + P T++
Sbjct: 127 YTDPPQESY-------TTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPAT-TIR 178
Query: 184 WFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGT 243
WFK EL ++ V+ + Y++ S + + +ED VIC+V H + G+ L+
Sbjct: 179 WFKGNTELKG-KSEVEEWSDM--YTVTSQLMLKVHKEDDGVPVICQVEHPAVTGN-LQTQ 234
Query: 244 ANLSETIRVPPTLEVT---QQPVRAENQVNVTCQVRKFYPQRLQLTWL 288
L + +++T Q R + + +TC+ PQ + +TW+
Sbjct: 235 RYLEVQYKPQVHIQMTYPLQGLTREGDALELTCEAIG-KPQPVMVTWV 281
Score = 29.3 bits (64), Expect = 8.8
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 249 TIRVPPT---LEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTEN 305
T+ VPP +++ + ++ V C P + W + GN + + S V E
Sbjct: 139 TVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATT-IRWFK-GN-TELKGKSEVEEW 195
Query: 306 KDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVS 342
D Y S L++ V D V + CQVEH PAV+
Sbjct: 196 SD-MYTVTSQLMLKVHKEDDGVPVICQVEH---PAVT 228
>gi|148664190 immunoglobulin superfamily, member 4D isoform 1 [Homo
sapiens]
Length = 442
Score = 49.7 bits (117), Expect = 6e-06
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 26/288 (9%)
Query: 4 AGPAPGRLGPLLCLLLAASCAWSGVAGEEELQVIQPDKSVLVAAGETATLRCTATSLIPV 63
A AP L L LLL ++ A + L K V V GE AT+ C
Sbjct: 17 AAAAPPGLRLRLLLLLFSAAALIPTGDGQNLFT----KDVTVIEGEVATISCQVNK---- 68
Query: 64 GPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVK 123
+ P R+ IY + P + L ++ + + + N++ +D G Y+C
Sbjct: 69 SDDSVIQLLNPNRQTIYFRD--FRPLKDSRFQLLNFSSSELKVSLTNVSISDEGRYFCQL 126
Query: 124 FRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLK 183
+ + T ++V P ++ A + C + P T++
Sbjct: 127 YTDPPQESY-------TTITVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPAT-TIR 178
Query: 184 WFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGT 243
WFK EL ++ V+ + Y++ S + + +ED VIC+V H + G+ L+
Sbjct: 179 WFKGNTELKG-KSEVEEWSDM--YTVTSQLMLKVHKEDDGVPVICQVEHPAVTGN-LQTQ 234
Query: 244 ANLSETIRVPPTLEVT---QQPVRAENQVNVTCQVRKFYPQRLQLTWL 288
L + +++T Q R + + +TC+ PQ + +TW+
Sbjct: 235 RYLEVQYKPQVHIQMTYPLQGLTREGDALELTCEAIG-KPQPVMVTWV 281
Score = 29.3 bits (64), Expect = 8.8
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 249 TIRVPPT---LEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTEN 305
T+ VPP +++ + ++ V C P + W + GN + + S V E
Sbjct: 139 TVLVPPRNLMIDIQKDTAVEGEEIEVNCTAMASKPATT-IRWFK-GN-TELKGKSEVEEW 195
Query: 306 KDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVS 342
D Y S L++ V D V + CQVEH PAV+
Sbjct: 196 SD-MYTVTSQLMLKVHKEDDGVPVICQVEH---PAVT 228
>gi|17986001 major histocompatibility complex, class I, B precursor
[Homo sapiens]
Length = 362
Score = 49.3 bits (116), Expect = 8e-06
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 253 PPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNW 312
PP VT P+ ++++ + C FYP + LTW +G +T+ V G +
Sbjct: 208 PPKTHVTHHPI-SDHEATLRCWALGFYPAEITLTWQRDGE-DQTQDTELVETRPAGDRTF 265
Query: 313 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVSAHPKEQGSNTAAENTGSNERNI 372
W V V + ++ + TC V+H+G P L + P Q + I
Sbjct: 266 QKWAAVVVPS-GEEQRYTCHVQHEGLP-----KPLTLRWEPSSQSTVP-----------I 308
Query: 373 YIVVGVVCTLLVALLMAALYLVRIRQKKAQGSTSS 407
+V + L V ++ A + V R+K + G S
Sbjct: 309 VGIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGS 343
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 49.3 bits (116), Expect = 8e-06
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 253 PPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNW 312
PP VT P+ +E +V + C FYP+ + LTW G +T+ V G +
Sbjct: 221 PPKAHVTHHPI-SEREVTLRCWALGFYPEEISLTWQREGE-DQTQDMELVETRPSGDGTF 278
Query: 313 MSWLLVNVSAHRDDVKLTCQVEHDG 337
W + V + ++ + TC+V+H+G
Sbjct: 279 QKWAALVVPS-GEEQRYTCRVQHEG 302
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 49.3 bits (116), Expect = 8e-06
Identities = 64/274 (23%), Positives = 107/274 (39%), Gaps = 45/274 (16%)
Query: 41 KSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVSDLTKRN 100
K + V G+ + C A P+ I W +G G ++ + E H +
Sbjct: 1178 KHLKVQVGQRVDIPCNAQGT-PLPVITWSKG---GSTMLVDG-EHHV------------S 1220
Query: 101 NMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSA----PVVSGP 156
N D ++ I TP+DAG Y CV D+ E L V+ P+ P +
Sbjct: 1221 NPDGTLSIDQATPSDAGIYTCVATNIAGTDETEI------TLHVQEPPTVEDLEPPYNTT 1274
Query: 157 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV 216
+ F C + G +P+ T+KW NG EL+ + + + + I S
Sbjct: 1275 FQERVANQRIEFPCPAKG-TPKP-TIKWLHNGRELTGREPGISILEDGTLLVIAS----- 1327
Query: 217 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL----EVTQQPVRAENQVNVT 272
+T D + + IC + + NL + VPP + +VT V N+
Sbjct: 1328 VTPYD-NGEYICVAVN---EAGTTERKYNLK--VHVPPVIKDKEQVTNVSVLLNQLTNLF 1381
Query: 273 CQVRKFYPQRLQLTWLENGNVSRTETASTVTENK 306
C+V + P + + + +N V+ + T TV K
Sbjct: 1382 CEV-EGTPSPIIMWYKDNVQVTESSTIQTVNNGK 1414
Score = 40.8 bits (94), Expect = 0.003
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 34/255 (13%)
Query: 114 ADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESH 173
+DAG Y CV ++ + L V PS + A + V CE+
Sbjct: 1984 SDAGIYKCVAINSAGATELFYS------LQVHVAPSISGSNNMVA-VVVNNPVRLECEAR 2036
Query: 174 GFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV-LTREDVHSQVICEVAH 232
G +T W K+G+ +S F + + S +++ LT +
Sbjct: 2037 GIPAPSLT--WLKDGSPVSSFSNGLQ---------VLSGGRILALTSAQISDTGRYTCVA 2085
Query: 233 VTLQGDPLRGTANLSETIRVPPTLEVTQQPVRA--ENQVNVTCQVRKFYPQRLQLTWLEN 290
V G+ R ++ + VPP + +Q V V + CQ P L TWL++
Sbjct: 2086 VNAAGEKQR---DIDLRVYVPPNIMGEEQNVSVLISQAVELLCQSDAIPPPTL--TWLKD 2140
Query: 291 GNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLKVS 350
G+ + +++EN+ S L + + +D + TC+ + K++++ +
Sbjct: 2141 GHPLLKKPGLSISENR-------SVLKIEDAQVQDTGRYTCEATNVA-GKTEKNYNVNIW 2192
Query: 351 AHPKEQGSNTAAENT 365
P GS+ + T
Sbjct: 2193 VPPNIGGSDELTQLT 2207
Score = 37.4 bits (85), Expect = 0.032
Identities = 45/200 (22%), Positives = 73/200 (36%), Gaps = 30/200 (15%)
Query: 106 IRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 165
++I N D G Y CV F L+V PS +
Sbjct: 2928 LQILNTQITDIGRYVCVAENTAGSAKKYFN------LNVHVPPSVIGPKSENLTVVVNNF 2981
Query: 166 VSFTCESHGFSPRDITLKWFKNGNELS-DFQTNVDPVGESVSYSIHSTAKVVLTREDVHS 224
+S TCE GF P D L W KN + + T + P G T +++ +
Sbjct: 2982 ISLTCEVSGFPPPD--LSWLKNEQPIKLNTNTLIVPGGR--------TLQIIRAKVSDGG 3031
Query: 225 QVICEVAHVTLQGDPLRGTANLSETIRVPPTLE------VTQQPVRAENQVNVTCQVRKF 278
+ C + G+ + S T+ VPP+++ ++ VR V++ C+
Sbjct: 3032 EYTC--IAINQAGESKK---KFSLTVYVPPSIKDHDSESLSVVNVREGTSVSLECESNAV 3086
Query: 279 YPQRLQLTWLENGNVSRTET 298
P +TW +NG + T
Sbjct: 3087 PPP--VITWYKNGRMITEST 3104
Score = 36.2 bits (82), Expect = 0.072
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 34/161 (21%)
Query: 106 IRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTEL-SVRAKPSAPVVSGPAAR---AT 161
++I DAGTY CV ++ AGT L ++ P V P +
Sbjct: 4043 LQISRAVREDAGTYMCVA-----------QNPAGTALGKIKLNVQVPPVISPHLKEYVIA 4091
Query: 162 PQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTRED 221
++ +CE+ G P DIT W K+G + ES+ + S+ + +
Sbjct: 4092 VDKPITLSCEADGLPPPDIT--WHKDGR----------AIVESIRQRVLSSGSLQIAFVQ 4139
Query: 222 VHSQVICEVAHVTLQGDPLRGTANLSE--TIRVPPTLEVTQ 260
+ H T + G+++ S T+ VPP + T+
Sbjct: 4140 PG-----DAGHYTCMAANVAGSSSTSTKLTVHVPPRIRSTE 4175
Score = 32.0 bits (71), Expect = 1.4
Identities = 51/215 (23%), Positives = 80/215 (37%), Gaps = 28/215 (13%)
Query: 99 RNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVSGPAA 158
R D ++ I N P DAG Y C+ D + L P VV
Sbjct: 659 RMTSDGTLFIKNAAPKDAGIYGCLASNSAGTDK------QNSTLRYIEAPKLMVVQSELL 712
Query: 159 RATPQHTVSFTCESHGFSPRDITLKWFKNGNEL--SDFQTNVDPVGESVSYSIHSTAKVV 216
A TV C++ G P + KWFK EL S F +DP + K+
Sbjct: 713 VALGDITV-MECKTSGIPPPQV--KWFKGDLELRPSTFLI-IDP--------LLGLLKIQ 760
Query: 217 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVT--CQ 274
T++ C + + R T ++ + PP V E NVT C
Sbjct: 761 ETQDLDAGDYTCVAIN-----EAGRATGKITLDVGSPPVFIQEPADVSMEIGSNVTLPCY 815
Query: 275 VRKFYPQRLQLTWLENGNV-SRTETASTVTENKDG 308
V+ + ++ L+N + SR + S++++ + G
Sbjct: 816 VQGYPEPTIKWRRLDNMPIFSRPFSVSSISQLRTG 850
Score = 31.6 bits (70), Expect = 1.8
Identities = 66/302 (21%), Positives = 112/302 (37%), Gaps = 53/302 (17%)
Query: 22 SCAWSGVAGEEELQV-----IQPDKSVLVAAGETATL--RCTATSLIPVGPIQWF--RGA 72
+C S +AGE+EL + P L G A +I PI + A
Sbjct: 2744 TCVASNIAGEDELDFDVNIQVPPSFQKLWEIGNMLDTGRNGEAKDVIINNPISLYCETNA 2803
Query: 73 GPGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDV 132
P L + K+GH T SD ++I DAG Y CV + D +
Sbjct: 2804 APPPTLTW-YKDGH---PLTSSDKVLILPGGRVLQIPRAKVEDAGRYTCVAVNEAGEDSL 2859
Query: 133 EFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV------SFTCESHGF-SPRDITLKWF 185
++ VR P++ G + + TV C S G +PR+ W
Sbjct: 2860 QY--------DVRVL-VPPIIKGANSDLPEEVTVLVNKSALIECLSSGSPAPRN---SWQ 2907
Query: 186 KNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTAN 245
K+G P+ E + S +++ + + I ++ + G+A
Sbjct: 2908 KDG----------QPLLEDDHHKFLSNGRIL----QILNTQITDIGRYVCVAENTAGSAK 2953
Query: 246 --LSETIRVPPTL---EVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETAS 300
+ + VPP++ + V N +++TC+V F P L+WL+N + T +
Sbjct: 2954 KYFNLNVHVPPSVIGPKSENLTVVVNNFISLTCEVSGFPPP--DLSWLKNEQPIKLNTNT 3011
Query: 301 TV 302
+
Sbjct: 3012 LI 3013
Score = 31.2 bits (69), Expect = 2.3
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 28/162 (17%)
Query: 19 LAASCAWSGVAG-----EEELQVIQPDKSVLVAAGETATLRCTATSLIPVGPIQWFRGAG 73
+A S A +G A E VIQ +V V GE A L C S + + W R
Sbjct: 500 IAVSSAGTGRAQTFFDVSEPPPVIQVPNNVTVTPGERAVLTCLIISAVDYN-LTWQR--- 555
Query: 74 PGRELIYNQKEGHFPRVTTVSDLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVE 133
N ++ + L + S+ + ++ DAG Y+C+ +G
Sbjct: 556 -------NDRDVRLAEPARIRTLA-----NLSLELKSVKFNDAGEYHCMVSSEGG----- 598
Query: 134 FKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGF 175
S A L+V+ P V+ + T VS C + G+
Sbjct: 599 -SSAASVFLTVQEPPKVTVMPKNQS-FTGGSEVSIMCSATGY 638
Score = 30.4 bits (67), Expect = 3.9
Identities = 60/265 (22%), Positives = 94/265 (35%), Gaps = 52/265 (19%)
Query: 36 VIQPD-KSVLVAAGETATLRCTATSLIPVGPIQWFRGAGPGRELIYNQKEGHFPRVTTVS 94
VI P K ++A + TL C A L P I W + GR + V
Sbjct: 4080 VISPHLKEYVIAVDKPITLSCEADGL-PPPDITWHKD---GRAI--------------VE 4121
Query: 95 DLTKRNNMDFSIRIGNITPADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSAPVVS 154
+ +R S++I + P DAG Y C+ +V S T+L+V P
Sbjct: 4122 SIRQRVLSSGSLQIAFVQPGDAGHYTCM------AANVAGSSSTSTKLTVHVPPRIRSTE 4175
Query: 155 GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF--QTNVDPVGESVSYSIHST 212
G C + G + W K+ L++ + +P GE +
Sbjct: 4176 GHYT-VNENSQAILPCVADGIPTP--AINWKKDNVLLANLLGKYTAEPYGELI------L 4226
Query: 213 AKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP----VRAENQ 268
VVL ++ V A T +S T+ V PT T+ P + Q
Sbjct: 4227 ENVVLEDSGFYTCVANNAAG--------EDTHTVSLTVHVLPTF--TELPGDVSLNKGEQ 4276
Query: 269 VNVTCQVRKFYPQRLQLTWLENGNV 293
+ ++C+ +LTW N N+
Sbjct: 4277 LRLSCKATGI--PLPKLTWTFNNNI 4299
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,487,083
Number of Sequences: 37866
Number of extensions: 1019528
Number of successful extensions: 3611
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 250
Number of HSP's that attempted gapping in prelim test: 3050
Number of HSP's gapped (non-prelim): 750
length of query: 504
length of database: 18,247,518
effective HSP length: 107
effective length of query: 397
effective length of database: 14,195,856
effective search space: 5635754832
effective search space used: 5635754832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.