Guide to the Human Genome
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Name: SIRPD Sequence: fasta or formatted (197aa) NCBI GI: 30425382
Description:

signal-regulatory protein delta

Referenced in:

Additional Genes in Development
Receptor Tyrosine Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         10           1
 C cysteine            3.0          6           3
 D aspartate           2.5          5           1
 E glutamate           4.1          8           1
 F phenylalanine       4.1          8           1
 G glycine             8.1         16           1
 H histidine           3.0          6           2
 I isoleucine          4.6          9           2
 K lysine              5.1         10           1
 L leucine            11.2         22           3
 M methionine          1.0          2           1
 N asparagine          4.6          9           1
 P proline             9.1         18           2
 Q glutamine           4.1          8           2
 R arginine            6.1         12           1
 S serine              7.1         14           1
 T threonine           8.1         16           2
 V valine              5.6         11           1
 W tryptophan          0.5          1           1
 Y tyrosine            3.0          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   signal-regulatory protein delta 
SIRPB1                0.301   signal-regulatory protein beta 1 isoform 3 precurso...
SIRPG                 0.296   signal-regulatory protein gamma isoform 3 precursor ...
SIRPG                 0.296   signal-regulatory protein gamma isoform 1 precursor ...
SIRPB1                0.286   signal-regulatory protein beta 1 isoform 1 precurso...
SIRPG                 0.286   signal-regulatory protein gamma isoform 2 precursor ...
SIRPB1                0.273   signal-regulatory protein beta 1 isoform 2 precurso...
SIRPA                 0.255   signal-regulatory protein alpha precursor 
SIRPA                 0.255   signal-regulatory protein alpha precursor 
SIRPA                 0.255   signal-regulatory protein alpha precursor 
LOC654056             0.223   PREDICTED: similar to signal-regulatory protein bet...
LOC654056             0.223   PREDICTED: similar to signal-regulatory protein bet...
LOC100294049          0.179   PREDICTED: similar to hCG2019710 
LOC100291000          0.179   PREDICTED: hypothetical protein XP_002348043 
LOC100289473          0.140   PREDICTED: hypothetical protein XP_002344218 
SIRPB2                0.140   signal-regulatory protein beta 2 isoform 2 
SIRPB2                0.140   signal-regulatory protein beta 2 isoform 1 
CD7                   0.055   CD7 antigen precursor 
LOC100291682          0.036   PREDICTED: similar to hCG1686089 
LOC100290992          0.036   PREDICTED: hypothetical protein XP_002347049 
LOC100130100          0.036   PREDICTED: similar to hCG26659 
LOC100291464          0.036   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.036   PREDICTED: similar to hCG26659 
LOC440871             0.034   PREDICTED: similar to hCG2043206 
HAVCR2                0.031   T cell immunoglobulin mucin 3 
VTCN1                 0.031   V-set domain containing T cell activation inhibitor ...
IGSF11                0.029   immunoglobulin superfamily, member 11 isoform b [Hom...
NFASC                 0.026   neurofascin isoform 3 precursor 
NFASC                 0.026   neurofascin isoform 2 precursor 
NFASC                 0.026   neurofascin isoform 4 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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