Guide to the Human Genome
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Name: ATRIP Sequence: fasta or formatted (791aa) NCBI GI: 18390347
Description:

ATR interacting protein isoform 1

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [764aa] ATR interacting protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         61           4
 C cysteine            2.9         23           1
 D aspartate           5.3         42           2
 E glutamate           6.6         52           3
 F phenylalanine       3.2         25           2
 G glycine             6.6         52           2
 H histidine           3.2         25           1
 I isoleucine          1.8         14           1
 K lysine              4.7         37           2
 L leucine            13.7        108           5
 M methionine          1.9         15           2
 N asparagine          2.3         18           1
 P proline             7.0         55           3
 Q glutamine           5.7         45           2
 R arginine            5.2         41           2
 S serine             10.2         81           4
 T threonine           4.6         36           2
 V valine              6.6         52           2
 W tryptophan          0.5          4           1
 Y tyrosine            0.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATR interacting protein isoform 1 
ATRIP                 0.954   ATR interacting protein isoform 2 
DCTN1                 0.014   dynactin 1 isoform 4 
DCTN1                 0.014   dynactin 1 isoform 3 
DCTN1                 0.014   dynactin 1 isoform 2 
DCTN1                 0.014   dynactin 1 isoform 1 
MSN                   0.014   moesin 
FILIP1                0.013   filamin A interacting protein 1 
ROCK1                 0.012   Rho-associated, coiled-coil containing protein kinase...
AZI2                  0.012   5-azacytidine induced 2 isoform c 
AZI2                  0.012   5-azacytidine induced 2 isoform b 
AZI2                  0.012   5-azacytidine induced 2 isoform a 
MYO18A                0.012   myosin 18A isoform b 
MYO18A                0.012   myosin 18A isoform a 
RIMBP3B               0.012   RIMS binding protein 3B 
RIMBP3C               0.012   RIMS binding protein 3C 
WASF2                 0.012   WAS protein family, member 2 
ERC1                  0.012   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.012   RAB6-interacting protein 2 isoform delta 
CCDC13                0.012   coiled-coil domain containing 13 
ERC2                  0.012   cytomatrix protein p110 
MAP7D1                0.012   MAP7 domain containing 1 
C14orf38              0.011   PREDICTED: hypothetical protein 
C14orf38              0.011   PREDICTED: hypothetical protein 
C14orf38              0.011   PREDICTED: hypothetical protein 
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.011   spectrin repeat containing, nuclear envelope 1 isof...
LBXCOR1               0.011   LBXCOR1 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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