Guide to the Human Genome
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Name: RGPD7 Sequence: fasta or formatted (904aa) NCBI GI: 118197270
Description:

RANBP2-like and GRIP domain containing 7

Referenced in:

Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         60           2
 C cysteine            2.0         18           1
 D aspartate           5.1         46           2
 E glutamate           8.0         72           2
 F phenylalanine       2.8         25           1
 G glycine             4.6         42           2
 H histidine           3.2         29           2
 I isoleucine          4.4         40           2
 K lysine              7.6         69           2
 L leucine            12.9        117           3
 M methionine          1.5         14           2
 N asparagine          4.1         37           2
 P proline             4.2         38           2
 Q glutamine           4.5         41           2
 R arginine            5.0         45           2
 S serine              8.3         75           2
 T threonine           4.0         36           1
 V valine              5.1         46           2
 W tryptophan          1.8         16           2
 Y tyrosine            4.2         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RANBP2-like and GRIP domain containing 7 
RGPD5                 1.000   RANBP2-like and GRIP domain containing 5 isoform 2 [...
RGPD5                 0.957   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD6                 0.957   RANBP2-like and GRIP domain containing 6 
RGPD8                 0.956   PREDICTED: RANBP2-like and GRIP domain containing 8...
RANBP2                0.911   RAN binding protein 2 
RGPD3                 0.894   RANBP2-like and GRIP domain containing 3 
RGPD4                 0.893   RANBP2-like and GRIP domain containing 4 
RGPD1                 0.874   RANBP2-like and GRIP domain containing 1 
RGPD2                 0.110   RANBP2-like and GRIP domain containing 2 
RGPD8                 0.065   PREDICTED: RANBP2-like and GRIP domain containing 8...
ZC3H13                0.013   zinc finger CCCH-type containing 13 
SYCP1                 0.008   synaptonemal complex protein 1 
CDC27                 0.007   cell division cycle protein 27 isoform 1 
CDC27                 0.007   cell division cycle protein 27 isoform 2 
BBS4                  0.006   Bardet-Biedl syndrome 4 
CDC23                 0.006   cell division cycle protein 23 
TMTC1                 0.006   transmembrane and tetratricopeptide repeat containin...
PEX5                  0.006   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.006   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.006   peroxisomal biogenesis factor 5 isoform c 
PEX5                  0.006   peroxisomal biogenesis factor 5 isoform a 
PEX5                  0.006   peroxisomal biogenesis factor 5 isoform b 
OGT                   0.006   O-linked GlcNAc transferase isoform 2 
OGT                   0.006   O-linked GlcNAc transferase isoform 1 
TMTC2                 0.006   transmembrane and tetratricopeptide repeat containin...
TTC18                 0.005   tetratricopeptide repeat domain 18 
CLEC4F                0.005   C-type lectin, superfamily member 13 
CENPF                 0.005   centromere protein F 
MYH3                  0.004   myosin, heavy chain 3, skeletal muscle, embryonic [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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