Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RGPD8 Sequence: fasta or formatted (93aa) NCBI GI: 239758132
Description:

PREDICTED: RANBP2-like and GRIP domain containing 8

Referenced in:

Ran and Rag

Other entries for this name:
alt prot [1765aa] PREDICTED: RANBP2-like and GRIP domain containing 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3          4           1
 C cysteine            1.1          1           1
 D aspartate           8.6          8           2
 E glutamate           7.5          7           2
 F phenylalanine       4.3          4           1
 G glycine             6.5          6           1
 H histidine           1.1          1           1
 I isoleucine          5.4          5           1
 K lysine              7.5          7           1
 L leucine            12.9         12           2
 M methionine          3.2          3           1
 N asparagine          3.2          3           1
 P proline             4.3          4           1
 Q glutamine           4.3          4           1
 R arginine            2.2          2           1
 S serine             10.8         10           2
 T threonine           2.2          2           1
 V valine              7.5          7           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: RANBP2-like and GRIP domain containing 8... 
RGPD8                 0.738   PREDICTED: RANBP2-like and GRIP domain containing 8...
RGPD5                 0.738   RANBP2-like and GRIP domain containing 5 isoform 1 [...
RGPD5                 0.738   RANBP2-like and GRIP domain containing 5 isoform 2 [...
RGPD7                 0.738   RANBP2-like and GRIP domain containing 7 
RGPD6                 0.738   RANBP2-like and GRIP domain containing 6 
RGPD3                 0.688   RANBP2-like and GRIP domain containing 3 
RGPD4                 0.688   RANBP2-like and GRIP domain containing 4 
RANBP2                0.681   RAN binding protein 2 
RGPD1                 0.662   RANBP2-like and GRIP domain containing 1 
HTR1A                 0.019   5-hydroxytryptamine (serotonin) receptor 1A 
HYDIN                 0.019   hydrocephalus inducing isoform a 
HYDIN                 0.019   hydrocephalus inducing isoform b 
PLCB1                 0.013   phosphoinositide-specific phospholipase C beta 1 iso...
PLCB1                 0.013   phosphoinositide-specific phospholipase C beta 1 iso...
GRB2                  0.006   growth factor receptor-bound protein 2 isoform 1 [Hom...
GRB2                  0.006   growth factor receptor-bound protein 2 isoform 2 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press