Guide to the Human Genome
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Name: CAPS Sequence: fasta or formatted (162aa) NCBI GI: 18104964
Description:

calcyphosine isoform b

Referenced in:

Thyroid and Thyroid Hormone Receptor

Other entries for this name:
alt prot [189aa] calcyphosine isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         21           3
 C cysteine            1.2          2           1
 D aspartate           9.3         15           2
 E glutamate           6.2         10           2
 F phenylalanine       4.3          7           2
 G glycine             8.6         14           1
 H histidine           0.6          1           1
 I isoleucine          1.2          2           1
 K lysine              3.1          5           1
 L leucine            10.5         17           1
 M methionine          3.7          6           2
 N asparagine          1.2          2           1
 P proline             1.9          3           2
 Q glutamine           4.9          8           1
 R arginine            9.3         15           1
 S serine              7.4         12           1
 T threonine           3.7          6           1
 V valine              6.8         11           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.9          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcyphosine isoform b 
CAPS                  0.949   calcyphosine isoform a 
CAPSL                 0.468   calcyphosine-like 
CAPSL                 0.468   calcyphosine-like 
CAPS2                 0.156   calcyphosine 2 
CALML5                0.102   calmodulin-like 5 
SLC25A23              0.098   solute carrier family 25, member 23 
SLC25A24              0.098   solute carrier family 25 member 24 isoform 1 
CALM3                 0.092   calmodulin 3 
CALM2                 0.092   calmodulin 2 
CALM1                 0.092   calmodulin 1 
CALML3                0.081   calmodulin-like 3 
TNNC2                 0.081   fast skeletal muscle troponin C 
SLC25A24              0.071   solute carrier family 25 member 24 isoform 2 
CABP7                 0.064   calcium binding protein 7 
CALN1                 0.064   calneuron 1 isoform 2 
CALN1                 0.064   calneuron 1 isoform 1 
CABP5                 0.064   calcium binding protein 5 
LOC100292202          0.064   PREDICTED: similar to solute carrier family 25, mem...
SLC25A25              0.064   solute carrier family 25, member 25 isoform b 
CABP1                 0.061   calcium binding protein 1 isoform 3 
CABP1                 0.061   calcium binding protein 1 isoform 2 
CABP1                 0.061   calcium binding protein 1 isoform 1 
CABP2                 0.061   calcium binding protein 2 isoform 2 
CABP2                 0.061   calcium binding protein 2 isoform 1 
LOC100292202          0.058   PREDICTED: similar to solute carrier family 25, mem...
SLC25A25              0.058   solute carrier family 25, member 25 isoform c 
SLC25A25              0.058   solute carrier family 25, member 25 isoform a 
CALML6                0.058   calmodulin-like 6 
CETN1                 0.058   centrin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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