Guide to the Human Genome
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Search of human proteins with 17402931

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17402931 sperm associated antigen 11B isoform C
preproprotein [Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17402931 sperm associated antigen 11B isoform C preproprotein...   237   2e-63
gi|126131097 sperm associated antigen 11B isoform D preproprotei...   155   9e-39
gi|126032340 sperm associated antigen 11A [Homo sapiens]              149   6e-37
gi|126091042 sperm associated antigen 11B isoform G preproprotei...   147   2e-36
gi|7706551 sperm associated antigen 11B isoform A preproprotein ...   144   2e-35
gi|17402929 sperm associated antigen 11B isoform H preproprotein...   144   2e-35
gi|83582794 beta-defensin 110 [Homo sapiens]                           35   0.013
gi|82734214 beta-defensin 111 [Homo sapiens]                           32   0.11 
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ...    31   0.19 
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]            30   0.54 
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]            30   0.54 
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]            30   0.54 
gi|50344744 beta-defensin 108B [Homo sapiens]                          29   0.70 
gi|82734223 beta-defensin 124 [Homo sapiens]                           29   0.92 
gi|148806902 TBC1 domain family, member 12 [Homo sapiens]              28   1.2  
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho...    28   1.2  
gi|82734217 beta-defensin 112 [Homo sapiens]                           28   1.6  
gi|18250304 beta defensin 129 precursor [Homo sapiens]                 28   1.6  
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]           28   2.0  
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]           28   2.0  
gi|54112432 erv1-like growth factor [Homo sapiens]                     28   2.0  
gi|4502623 cyclin H [Homo sapiens]                                     27   3.5  
gi|156938343 talin 2 [Homo sapiens]                                    27   3.5  
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]    27   3.5  
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]    27   3.5  
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]    27   3.5  
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]    27   3.5  
gi|82734219 beta-defensin 114 [Homo sapiens]                           27   3.5  
gi|25121980 dispatched B [Homo sapiens]                                27   4.6  
gi|38176300 nestin [Homo sapiens]                                      26   6.0  

>gi|17402931 sperm associated antigen 11B isoform C preproprotein
           [Homo sapiens]
          Length = 113

 Score =  237 bits (604), Expect = 2e-63
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
           MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1   MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60

Query: 61  DLLPPRTPPYQEPASDLKVVDCRRSEGFCQEYCNYMETQVGYCSKKKDACCLH 113
           DLLPPRTPPYQEPASDLKVVDCRRSEGFCQEYCNYMETQVGYCSKKKDACCLH
Sbjct: 61  DLLPPRTPPYQEPASDLKVVDCRRSEGFCQEYCNYMETQVGYCSKKKDACCLH 113


>gi|126131097 sperm associated antigen 11B isoform D preproprotein
           [Homo sapiens]
          Length = 133

 Score =  155 bits (391), Expect = 9e-39
 Identities = 80/114 (70%), Positives = 90/114 (78%), Gaps = 2/114 (1%)

Query: 1   MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
           MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1   MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60

Query: 61  DLLPPRTPPYQ-EPASDLKVVDCRRSEGFCQ-EYCNYMETQVGYCSKKKDACCL 112
           DLLPPRTPPYQ +    ++   C   +G C+  +C+  E +   CS   + CC+
Sbjct: 61  DLLPPRTPPYQGDVPPGIRNTICHMQQGICRLFFCHSGEKKRDICSDPWNRCCV 114


>gi|126032340 sperm associated antigen 11A [Homo sapiens]
          Length = 108

 Score =  149 bits (375), Expect = 6e-37
 Identities = 75/91 (82%), Positives = 80/91 (87%), Gaps = 1/91 (1%)

Query: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
          MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60

Query: 61 DLLPPRTPPYQ-EPASDLKVVDCRRSEGFCQ 90
          DLLPPRTPPYQ +    ++   CR  +G C+
Sbjct: 61 DLLPPRTPPYQGDVPLGIRNTICRMQQGICR 91


>gi|126091042 sperm associated antigen 11B isoform G preproprotein
          [Homo sapiens]
          Length = 108

 Score =  147 bits (371), Expect = 2e-36
 Identities = 74/91 (81%), Positives = 79/91 (86%), Gaps = 1/91 (1%)

Query: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
          MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60

Query: 61 DLLPPRTPPYQ-EPASDLKVVDCRRSEGFCQ 90
          DLLPPRTPPYQ +    ++   C   +G C+
Sbjct: 61 DLLPPRTPPYQGDVPPGIRNTICHMQQGICR 91


>gi|7706551 sperm associated antigen 11B isoform A preproprotein
          [Homo sapiens]
          Length = 103

 Score =  144 bits (362), Expect = 2e-35
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
          MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60

Query: 61 DLLPPRTPPYQ 71
          DLLPPRTPPYQ
Sbjct: 61 DLLPPRTPPYQ 71


>gi|17402929 sperm associated antigen 11B isoform H preproprotein
          [Homo sapiens]
          Length = 82

 Score =  144 bits (362), Expect = 2e-35
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60
          MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR
Sbjct: 1  MRQRLLPSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKR 60

Query: 61 DLLPPRTPPYQ 71
          DLLPPRTPPYQ
Sbjct: 61 DLLPPRTPPYQ 71


>gi|83582794 beta-defensin 110 [Homo sapiens]
          Length = 62

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C +  G C+ +C+ +E   GYC K +  CC+
Sbjct: 32  CEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62


>gi|82734214 beta-defensin 111 [Homo sapiens]
          Length = 67

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 81  DCRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           +CR   G C+  C+  E ++ YC +    CCL
Sbjct: 34  ECRIGNGQCKNQCHENEIRIAYCIRPGTHCCL 65


>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
           sapiens]
          Length = 111

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C R  G CQ++C   E  VG C   +  CCL
Sbjct: 66  CERPNGSCQDFCLETEIHVGRCLNSR-PCCL 95


>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 83

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C R  G C+++C   E  VG C   +  CCL
Sbjct: 38  CERPNGSCRDFCLETEIHVGRCLNSR-PCCL 67


>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 83

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C R  G C+++C   E  VG C   +  CCL
Sbjct: 38  CERPNGSCRDFCLETEIHVGRCLNSR-PCCL 67


>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 73

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C R  G C+++C   E  VG C   +  CCL
Sbjct: 28  CERPNGSCRDFCLETEIHVGRCLNSR-PCCL 57


>gi|50344744 beta-defensin 108B [Homo sapiens]
          Length = 73

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C R  G C+++C   E  VG C   +  CCL
Sbjct: 28  CERPNGSCRDFCLETEIHVGRCLNSQ-PCCL 57


>gi|82734223 beta-defensin 124 [Homo sapiens]
          Length = 71

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C + +G CQ YC   ET +  C      CCL
Sbjct: 27  CWKGQGACQTYCTRQETYMHLC-PDASLCCL 56


>gi|148806902 TBC1 domain family, member 12 [Homo sapiens]
          Length = 775

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 6/73 (8%)

Query: 20  PGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQEPASDL-- 77
           P ++ A   N  A   LG        + T  FQ+ R    RD LPP  PP   PA++   
Sbjct: 248 PPATSAERTNGGAEPRLGFSDIHFNSRNT--FQVSRGQSARDHLPPAGPPVPLPAAEQGP 305

Query: 78  --KVVDCRRSEGF 88
                  RRS GF
Sbjct: 306 AGASARARRSGGF 318


>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
            sapiens]
          Length = 1484

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 20   PGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQ 71
            P +S+A+   +   E L  L E+ PG GT+        V    LP  TPP Q
Sbjct: 961  PENSEAQEPENDQAEPLPGLEEKPPGVGTS------EGVYLTQLPHPTPPLQ 1006


>gi|82734217 beta-defensin 112 [Homo sapiens]
          Length = 113

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           C    G C+  C+  E ++ YC++    CC+
Sbjct: 54  CTAIGGRCKNQCDDSEFRISYCARPTTHCCV 84


>gi|18250304 beta defensin 129 precursor [Homo sapiens]
          Length = 183

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 70  YQEPASDLKVVDCRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
           YQ     + +  C    G C+++CN  E ++  C  KK  CC+
Sbjct: 15  YQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKK--CCV 55


>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
          Length = 1938

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 2   RQRLLPSVTSLLLVALLFPG-SSQARHVNHSATEALGELRERAPG---------QGTNGF 51
           R R+L  +  L     + P  +S A        E + E R   PG         Q  N  
Sbjct: 408 RNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLP 467

Query: 52  QLLRHAVKRDLLPPRTPPYQEPASDLKVVDCRRSEGFCQ 90
             ++H +  D L P+    + P+S  K   C  SEG  Q
Sbjct: 468 NTVQHMLLSDALTPQKKTSKRPSSSKKADSCTNSEGSSQ 506


>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
          Length = 1960

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 2   RQRLLPSVTSLLLVALLFPG-SSQARHVNHSATEALGELRERAPG---------QGTNGF 51
           R R+L  +  L     + P  +S A        E + E R   PG         Q  N  
Sbjct: 408 RNRILQLMPQLSPTPSMMPSPNSHAAGFKGFGLEGVPEKRLTDPGLSSLSALSTQVANLP 467

Query: 52  QLLRHAVKRDLLPPRTPPYQEPASDLKVVDCRRSEGFCQ 90
             ++H +  D L P+    + P+S  K   C  SEG  Q
Sbjct: 468 NTVQHMLLSDALTPQKKTSKRPSSSKKADSCTNSEGSSQ 506


>gi|54112432 erv1-like growth factor [Homo sapiens]
          Length = 205

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)

Query: 20  PGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQEPASDLKV 79
           PG +++  ++  AT+A G                 R A +RD     + P Q P SD  V
Sbjct: 19  PGGARSEMMDDLATDARG-----------------RGAGRRDAAASASTPAQAPTSDSPV 61

Query: 80  VD---CRRSEGFCQEYCNYMETQVGYCSKKKDAC 110
            +    RR    C ++  +M TQ    +K ++ C
Sbjct: 62  AEDASRRRPCRACVDFKTWMRTQQKRDTKFREDC 95


>gi|4502623 cyclin H [Homo sapiens]
          Length = 323

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 18 LFPGSSQARHVNHSATEALGELRERAPGQGTNGFQLLRHAVKRDLLPPRTPPYQEPASDL 77
          ++  SSQ RH   S+ E L  LR  A        +    AV    + P  P + EP  ++
Sbjct: 1  MYHNSSQKRHWTFSSEEQLARLRADA------NRKFRCKAVANGKVLPNDPVFLEPHEEM 54

Query: 78 KVVDCRRSEGFCQEYCN 94
           +  C+  E    E+C+
Sbjct: 55 TL--CKYYEKRLLEFCS 69


>gi|156938343 talin 2 [Homo sapiens]
          Length = 2542

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 19/87 (21%)

Query: 16   ALLFPGSSQ--------ARHVNHSATEALGELRERAPGQGTNGFQL--LRHAVKR---DL 62
            AL+ PG ++        A+ V+HS    +  L    PGQ      L  +  + K+   D 
Sbjct: 1174 ALIAPGDAERQQRLAQVAKAVSHSLNNCVNCL----PGQKDVDVALKSIGESSKKLLVDS 1229

Query: 63   LPPRTPPYQEPASDLK--VVDCRRSEG 87
            LPP T P+QE  S+L     D  +S G
Sbjct: 1230 LPPSTKPFQEAQSELNQAAADLNQSAG 1256


>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
          Length = 1031

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 24/82 (29%)

Query: 7   PSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQG-------------TNGFQL 53
           PSV+SLLL    FP       V+H    +  E   ++PG               T G + 
Sbjct: 231 PSVSSLLLHLRPFP-------VDHKGVLSGAEAPTQSPGTSPLEVLPGYETHLETTGHKK 283

Query: 54  LRHAVKRDLLPPRTPPYQEPAS 75
           +  A +    PP  PP Q PAS
Sbjct: 284 MPQAFE----PPMPPPCQSPAS 301


>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
          Length = 1006

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 24/82 (29%)

Query: 7   PSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQG-------------TNGFQL 53
           PSV+SLLL    FP       V+H    +  E   ++PG               T G + 
Sbjct: 206 PSVSSLLLHLRPFP-------VDHKGVLSGAEAPTQSPGTSPLEVLPGYETHLETTGHKK 258

Query: 54  LRHAVKRDLLPPRTPPYQEPAS 75
           +  A +    PP  PP Q PAS
Sbjct: 259 MPQAFE----PPMPPPCQSPAS 276


>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
          Length = 1044

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 24/82 (29%)

Query: 7   PSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQG-------------TNGFQL 53
           PSV+SLLL    FP       V+H    +  E   ++PG               T G + 
Sbjct: 244 PSVSSLLLHLRPFP-------VDHKGVLSGAEAPTQSPGTSPLEVLPGYETHLETTGHKK 296

Query: 54  LRHAVKRDLLPPRTPPYQEPAS 75
           +  A +    PP  PP Q PAS
Sbjct: 297 MPQAFE----PPMPPPCQSPAS 314


>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
          Length = 1079

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 24/82 (29%)

Query: 7   PSVTSLLLVALLFPGSSQARHVNHSATEALGELRERAPGQG-------------TNGFQL 53
           PSV+SLLL    FP       V+H    +  E   ++PG               T G + 
Sbjct: 279 PSVSSLLLHLRPFP-------VDHKGVLSGAEAPTQSPGTSPLEVLPGYETHLETTGHKK 331

Query: 54  LRHAVKRDLLPPRTPPYQEPAS 75
           +  A +    PP  PP Q PAS
Sbjct: 332 MPQAFE----PPMPPPCQSPAS 349


>gi|82734219 beta-defensin 114 [Homo sapiens]
          Length = 69

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 82  CRRSEGFCQEYCNYMETQVGYCSKKKDACC 111
           C +  G C+  C   E Q+  CS  +  CC
Sbjct: 29  CTKRYGRCKRDCLESEKQIDICSLPRKICC 58


>gi|25121980 dispatched B [Homo sapiens]
          Length = 1401

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 51  FQLLRHAVKRDLLPPRTPPYQEPA 74
           +QLL   + RD L P+T  YQ P+
Sbjct: 409 YQLLHFLLDRDFLSPQTTDYQVPS 432


>gi|38176300 nestin [Homo sapiens]
          Length = 1621

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 6    LPSVTSLLLVALLFPGSSQAR-HVNHSATEALGELR---ERAPGQGTNGFQLLRHAVKRD 61
            LP     L+   + PG  QA   V   +  A+GE     E  PGQG  G     H  + +
Sbjct: 1059 LPEAIEPLVEDDVAPGGDQASPEVMLGSEPAMGESAAGAEPGPGQGVGGLGDPGHLTREE 1118

Query: 62   LLPPRTPPYQEPASDLKVV 80
            ++    PP +E + + K V
Sbjct: 1119 VM---EPPLEEESLEAKRV 1134


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,205,834
Number of Sequences: 37866
Number of extensions: 243218
Number of successful extensions: 642
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 40
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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