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Search of human proteins with 17158025
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17158025 RNA pseudouridylate synthase domain containing 1
[Homo sapiens]
(312 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17158025 RNA pseudouridylate synthase domain containing 1 [Ho... 657 0.0
gi|23308689 RNA pseudouridylate synthase domain containing 2 [Ho... 60 2e-09
gi|221316663 RNA pseudouridylate synthase domain containing 4 is... 52 5e-07
gi|221316667 RNA pseudouridylate synthase domain containing 4 is... 45 8e-05
gi|153792074 proline rich 12 [Homo sapiens] 40 0.002
gi|38194229 kelch-like 17 [Homo sapiens] 40 0.003
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 39 0.006
gi|30840978 neuroligin 2 [Homo sapiens] 39 0.006
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens] 39 0.008
gi|24432056 hypothetical protein LOC144717 [Homo sapiens] 38 0.010
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 37 0.023
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.029
gi|7706501 WW domain binding protein 11 [Homo sapiens] 37 0.029
gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo ... 36 0.038
gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo ... 36 0.038
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 36 0.050
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom... 36 0.050
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 36 0.050
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 36 0.050
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 36 0.050
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 36 0.050
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 35 0.066
gi|40217820 slit and trk like 3 protein [Homo sapiens] 35 0.066
gi|33356148 formin-like 1 [Homo sapiens] 35 0.066
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 35 0.086
gi|31543543 retinoic acid induced 17 [Homo sapiens] 35 0.086
gi|122937289 kinesin family member 18B [Homo sapiens] 35 0.086
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 35 0.11
gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo... 35 0.11
gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Hom... 35 0.11
>gi|17158025 RNA pseudouridylate synthase domain containing 1 [Homo
sapiens]
Length = 312
Score = 657 bits (1694), Expect = 0.0
Identities = 312/312 (100%), Positives = 312/312 (100%)
Query: 1 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF 60
MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF
Sbjct: 1 MEPGSVENLSIVYRSRDFLVVNKHWDVRIDSKAWRETLTLQKQLRYRFPELADPDTCYGF 60
Query: 61 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR 120
RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR
Sbjct: 61 RFCHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGR 120
Query: 121 NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC 180
NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC
Sbjct: 121 NSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHC 180
Query: 181 SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP 240
SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP
Sbjct: 181 SALGHPVVGDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSP 240
Query: 241 HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL 300
HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL
Sbjct: 241 HTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL 300
Query: 301 QWLSEWTLEPDS 312
QWLSEWTLEPDS
Sbjct: 301 QWLSEWTLEPDS 312
>gi|23308689 RNA pseudouridylate synthase domain containing 2 [Homo
sapiens]
Length = 545
Score = 60.1 bits (144), Expect = 2e-09
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 64 HQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVT-------ISH 116
H+LD TSG L A A + + ++R++ K Y+ + G VT +S+
Sbjct: 271 HRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSY 330
Query: 117 AIGRNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQL 176
+G +C +G KP T V + Y G S V +PLTGRTHQ+
Sbjct: 331 KVG----------VCRVDPRG----KPCET---VFQRLSYNGQS-SVVRCRPLTGRTHQI 372
Query: 177 RVHCSALGHPVVGDLTYGEVS 197
RVH LGHP++ D Y V+
Sbjct: 373 RVHLQFLGHPILNDPIYNSVA 393
>gi|221316663 RNA pseudouridylate synthase domain containing 4
isoform a [Homo sapiens]
Length = 377
Score = 52.4 bits (124), Expect = 5e-07
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 63 CHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNS 122
CH+LD T+G + +A +K A F+ R+V K Y A+ S + I
Sbjct: 149 CHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVEKE 208
Query: 123 TEGRA--HTMCIEGS-----------QGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPL 169
+G+ H M + S + N + ++T VL L + + V L+P+
Sbjct: 209 AQGQQQHHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSS----ALVELQPI 264
Query: 170 TGRTHQLRVHCS-ALGHPVVGDLTYGE 195
TG HQLRVH S L P++GD Y +
Sbjct: 265 TGIKHQLRVHLSFGLDCPILGDHKYSD 291
>gi|221316667 RNA pseudouridylate synthase domain containing 4
isoform b [Homo sapiens]
Length = 346
Score = 45.1 bits (105), Expect = 8e-05
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 63 CHQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVTISHAIGRNS 122
CH+LD T+G + +A +K A F+ R+V K Y A +T+ +
Sbjct: 149 CHRLDKETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWA----------ITVHVPM---P 195
Query: 123 TEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQLRVHCS- 181
+ G +E + + ++T VL L + + V L+P+TG HQLRVH S
Sbjct: 196 SAGVVDIPIVE-----KEAQVAVTQYQVLSSTLSS----ALVELQPITGIKHQLRVHLSF 246
Query: 182 ALGHPVVGDLTYGE 195
L P++GD Y +
Sbjct: 247 GLDCPILGDHKYSD 260
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 227 PDPFLPSLDACWSPHT-LLQSLDQLVQALRATPDPDPEDRGPRP-----GSPSALLPGPG 280
P P LPS ++ +P LL+ TP P P P P P + P P
Sbjct: 1435 PLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPS 1494
Query: 281 RPPPPPTKPPETEAQRGP 298
PPPPP PP A P
Sbjct: 1495 SPPPPPLPPPPPPAMPSP 1512
Score = 31.6 bits (70), Expect = 0.95
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 257 TPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL 300
TP+P + P P P A P P PPPP PP+ P L
Sbjct: 1447 TPEPPLLEEKPPPTPPPAPTPQP--QPPPPPPPPQPALPSPPPL 1488
Score = 31.2 bits (69), Expect = 1.2
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 22/78 (28%)
Query: 243 LLQSLDQLVQALRATPDPDPEDRG-----------------PRPGSPSALLPGPGRPP-- 283
L +S+ + AL P P+D P PG PSA G PP
Sbjct: 1394 LQESISSAISALDDPPLAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLL 1453
Query: 284 ---PPPTKPPETEAQRGP 298
PPPT PP Q P
Sbjct: 1454 EEKPPPTPPPAPTPQPQP 1471
Score = 31.2 bits (69), Expect = 1.2
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 240 PHTLLQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPP----TKPPETEAQ 295
P L S LV ++P P P P P +P P PPPP PPE A
Sbjct: 1478 PQPALPSPPPLVAPTPSSPPPPP-----LPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAA 1532
Query: 296 RGP 298
P
Sbjct: 1533 PSP 1535
Score = 28.5 bits (62), Expect = 8.0
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 250 LVQALRATPDPDPE---------DRGPRPGSPSALLPGPGRPPPPPTKPPETEA 294
L L P P P + R G+P P P PPPPP P + EA
Sbjct: 802 LPSVLSHAPSPSPSASKVGVHLLEPATRDGAPQ---PPPPPPPPPPPMPLQLEA 852
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 39.7 bits (91), Expect = 0.003
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 260 PDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQR 296
P + P GSP PGP PPPPP +PP EA+R
Sbjct: 8 PAGRTQSPEHGSPG---PGPEAPPPPPPQPPAPEAER 41
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 38.9 bits (89), Expect = 0.006
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 261 DPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGP 298
D G RPG P PG PPPPP PP+ + P
Sbjct: 2 DARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPP 39
Score = 36.6 bits (83), Expect = 0.029
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 258 PDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEA 294
P P P + P P P A PGPG P PP PP EA
Sbjct: 26 PPPAPPQQQPPPPPPPAPPPGPG--PAPPQHPPRAEA 60
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 256 ATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGP 298
ATP P P P P +P P P PP PP P Q P
Sbjct: 16 ATPAPGPPP--PPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPP 56
Score = 29.3 bits (64), Expect = 4.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 265 RGPRPG-SPSALLPGPGRPPPPPTKPPETEAQR 296
R P PG +P+A PGP P PP P A R
Sbjct: 759 RRPPPGPAPAAASPGPPPPASPPGAPASPRAPR 791
>gi|30840978 neuroligin 2 [Homo sapiens]
Length = 835
Score = 38.9 bits (89), Expect = 0.006
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 269 PGSPSALLPGPGRPPPPPTKPPETEAQRGP 298
P P A PG RPPPP T PPE E + GP
Sbjct: 630 PPRPPAGAPGTRRPPPPATLPPEPEPEPGP 659
>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
Length = 669
Score = 38.5 bits (88), Expect = 0.008
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 251 VQALRATPDPDPEDRGP-------RPGSPSALLPGPGRPPPPPTKPPETEAQRGPCLQ 301
+Q L TPD P+ P RPG P P P +PPPP K PE + GP +Q
Sbjct: 299 IQQLYGTPDGQPQPTQPLPTVTPRRPGRPDHRPPRPPQPPPPGGK-PERPPKPGPPVQ 355
>gi|24432056 hypothetical protein LOC144717 [Homo sapiens]
Length = 249
Score = 38.1 bits (87), Expect = 0.010
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 13/81 (16%)
Query: 243 LLQSLDQLVQALR-----ATPDPDPEDRGPRPGSPSALLPGPGRPPPP--------PTKP 289
+++ L+Q + A+R A P P P+ P PSAL P P P P P +P
Sbjct: 119 VVRELEQQLAAVRGGGGMALPQPQPQSLPLPPSLPSALAPVPSLPSAPAPVPALPLPRRP 178
Query: 290 PETEAQRGPCLQWLSEWTLEP 310
+ C W +E T P
Sbjct: 179 SALPPKENGCAVWSTEATFRP 199
Score = 32.7 bits (73), Expect = 0.42
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 229 PFLPSLDACWSPHTLLQSLDQLVQALRATPDPD---PEDRGPRPGSPSALL-PGPGRPPP 284
P PSL + +P L S V AL P P++ G S A PGP PPP
Sbjct: 147 PLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPPP 206
Query: 285 PPTKPPETEAQRGP 298
PP + A GP
Sbjct: 207 PPRR--RASAPHGP 218
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 37.0 bits (84), Expect = 0.023
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 226 TPDPFLPSLDACWSPHTL------LQSLDQLVQALRATPDPDPEDRGPRPGSPSALLPGP 279
TP P +P +P TL L S D V L P D P PG P+ P P
Sbjct: 1600 TPLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHP-PGPPAPAAPAP 1658
Query: 280 GRPPPPPTKPPETEA 294
P P P PP T++
Sbjct: 1659 AAPQPGPDPPPGTDS 1673
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 36.6 bits (83), Expect = 0.029
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 260 PDPEDRGPRPGSPSALLPGPGRPPPPPTKPP 290
P GP P PS L GP PPPPP PP
Sbjct: 351 PSSAPSGPPPPPPSVLGVGPVAPPPPPPPPP 381
Score = 33.5 bits (75), Expect = 0.25
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 255 RATPDPDPEDRGPRP--------GSPSALLPGPGRPPPPPTKPP 290
+A P P P GP P G P G G PPPPP++ P
Sbjct: 275 QAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAP 318
Score = 30.0 bits (66), Expect = 2.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 258 PDPDPEDRGPRPGSPSALLPGPGRPPPPPTKP 289
P P RG P PS P PPPPP++P
Sbjct: 300 PPPPARGRGAPPPPPSRA-PTAAPPPPPPSRP 330
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 36.6 bits (83), Expect = 0.029
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 254 LRATPDPDPEDRGPRP-------GSPSALLPGPGRPPPPPTKPPETEAQRGP 298
++A P P P GP P G P+ L PGP PP +PP RGP
Sbjct: 402 IQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPPFLRPPGMPGLRGP 453
Score = 34.7 bits (78), Expect = 0.11
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 258 PDPDP-EDRGPRPGSPSALLPGPGRPPPPPTKPP 290
P P P GP PG P L PGP PPP PP
Sbjct: 460 PGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPP 493
Score = 28.9 bits (63), Expect = 6.1
Identities = 15/33 (45%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 266 GPRPGSPSALLPGPGRPPPPPTKPPETEAQRGP 298
GP PG P PG PP PP P RGP
Sbjct: 461 GPPPGRP------PGPPPGPPPGLPPGPPPRGP 487
>gi|224586851 sorbin and SH3 domain containing 2 isoform 6 [Homo
sapiens]
Length = 824
Score = 36.2 bits (82), Expect = 0.038
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 254 LRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL 300
L TP P P + G +P S S L G P PPP T + R P L
Sbjct: 410 LPTTPTPVPREPGRKPLSSSRLGEVTGSPSPPPRSGAPTPSSRAPAL 456
>gi|224586846 sorbin and SH3 domain containing 2 isoform 4 [Homo
sapiens]
Length = 731
Score = 36.2 bits (82), Expect = 0.038
Identities = 19/47 (40%), Positives = 22/47 (46%)
Query: 254 LRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCL 300
L TP P P + G +P S S L G P PPP T + R P L
Sbjct: 317 LPTTPTPVPREPGRKPLSSSRLGEVTGSPSPPPRSGAPTPSSRAPAL 363
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 35.8 bits (81), Expect = 0.050
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 253 ALRATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTK-PPE 291
+L A+P PDP P P + PGP R PPP +K PPE
Sbjct: 74 SLPASPAPDP------PDPPDSAGPGPARSPPPSSKEPPE 107
Score = 28.5 bits (62), Expect = 8.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 267 PRPGSPSALLP-GPGRPPPPPTKPPETEAQR 296
P PG P A +P PG P P +P E EA +
Sbjct: 535 PEPGPPPATVPMAPGPPSVFPPEPEEPEADQ 565
>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
1 isoform c [Homo sapiens]
Length = 1450
Score = 35.8 bits (81), Expect = 0.050
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 27/96 (28%)
Query: 216 PTDTECVEVCTPDPFLPSLDAC--------------WSPHTLLQSL-----DQLVQALRA 256
PT PDP LP L A P LL SL + L+ +L +
Sbjct: 126 PTCFTTPSTAAPDPVLPPLPAKRHLAELSVPPVPPRTGPPRLLVSLPTKEEESLLPSLSS 185
Query: 257 TPDPDPEDRGPRPGSPSALLP-GPGRPPPPPTKPPE 291
P P E+ P + LP GP +PP PP PPE
Sbjct: 186 PPQPQSEE-------PLSTLPQGPPQPPSPPPCPPE 214
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 35.8 bits (81), Expect = 0.050
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 189 GDLTYGEVSGREDRPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSPHTLLQSLD 248
GD+ + ++ R L Y+ +PT T + + S+ P T L L
Sbjct: 1323 GDI-FKKLDSELSRAQEKALDTSYVILPTATATLRPKPKEEPKYSIHIDQMPQTRLIHLS 1381
Query: 249 QLVQALRATPDPDPEDRGPRPGSPSALLPG-PGRPPPPPTKPPETEAQRGPCLQ 301
+A + P P R P G P P P PPPPP PP+ P L+
Sbjct: 1382 TAPEA--SLPARSPPSRQPPSGGPPEAPPAQPPPPPPPPPPPPQQPLPPPPNLE 1433
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 35.8 bits (81), Expect = 0.050
Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 255 RATPDPDPEDRGPRPGSP--SALLPGPGRPPPPPTKPP 290
R P P P+ R P SA P P RPPPPP PP
Sbjct: 101 RRKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPP 138
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 35.8 bits (81), Expect = 0.050
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 254 LRATPDPDPEDRGPR--PGSPSALLPGPGRPPPPPTKPPETEA 294
+RA+P+ E+ G + P P LP P PPPPP PPE E+
Sbjct: 537 MRASPNLKQEE-GEKVLPPQPQPPLPPPPPPPPPPQLPPEAES 578
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 35.8 bits (81), Expect = 0.050
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 203 PFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLDACWSPHTLLQSLDQLVQALR-ATPDPD 261
P R +LH L + T+ + P PH+L L A+P
Sbjct: 791 PSRPVLHLLQLLLRTNLMKTQTLPTSPA-----GAHGPHSLALGLTATFPGEPGASPRLS 845
Query: 262 PEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCLQWLSEW 306
P P PG+P+ L PG P PPP P + + G Q +S W
Sbjct: 846 PGPSTP-PGAPTLPLASPGAPQPPPVTPERSFSASG--AQIVSRW 887
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 35.4 bits (80), Expect = 0.066
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 202 RPFRMMLHAFYLRIPTDTECVEVCTPDPFLPSLD---ACWSPHTLLQSLDQLVQALRATP 258
R +R Y P+ E P P LP + P + ++ +QA TP
Sbjct: 1938 RQYREAYDKLYPISPSSPETPPPPPPPPPLPPAPPQPSSMGPVKIPNTVSTPLQAPPPTP 1997
Query: 259 DPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETE 293
P P P P P PPPPP+ PP+ +
Sbjct: 1998 PPPPPPPPPPPPPP---------PPPPPSAPPQVQ 2023
Score = 28.5 bits (62), Expect = 8.0
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 258 PDPDPEDRGPRPGSPSAL--------------------LPGPGRPPPPPTKPPETEAQRG 297
P P P P P PS++ P P PPPPP PP
Sbjct: 1960 PPPPPPPLPPAPPQPSSMGPVKIPNTVSTPLQAPPPTPPPPPPPPPPPPPPPPPPPPSAP 2019
Query: 298 PCLQ 301
P +Q
Sbjct: 2020 PQVQ 2023
>gi|40217820 slit and trk like 3 protein [Homo sapiens]
Length = 977
Score = 35.4 bits (80), Expect = 0.066
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 258 PDPDPEDRGPRPGSPS-ALLPGPGRPP--PPPTKPP 290
P P + R PRP S S AL PGP +PP P T+PP
Sbjct: 333 PKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPP 368
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 35.4 bits (80), Expect = 0.066
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 260 PDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQR 296
P P P PG+ + P P PPPPP PP+ +R
Sbjct: 586 PPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDALGRR 622
Score = 33.5 bits (75), Expect = 0.25
Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 227 PDPFLPSLDACWSPHTLLQSLDQLVQALRATPDPDPEDR-------GPRPGSPSALLPGP 279
P P LP L SP S L +P+P P P P P GP
Sbjct: 544 PPPPLPGLP---SPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGP 600
Query: 280 GRPPPPPTKPP 290
PPPPP PP
Sbjct: 601 VPPPPPPPPPP 611
Score = 29.3 bits (64), Expect = 4.7
Identities = 26/89 (29%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Query: 213 LRIPTDTECVEVCTPDPFLPSLDACWSPHTLLQSLD-QLVQALRATPDPDPEDRGPRPGS 271
LR P D +E+ PS +P S L A P P P PG
Sbjct: 492 LRGPGDAVSIEILPVAVATPSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGL 551
Query: 272 PSALLPGPGRPPPPPTKPPETEAQRGPCL 300
PS P PP P P E P L
Sbjct: 552 PSPQEAPPSAPPQAPPLPGSPEPPPAPPL 580
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 35.0 bits (79), Expect = 0.086
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 255 RATPDPDPEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCLQWLSEWTLEPD 311
R + + E+ G PG AL P P PPPPP P E +R +W E+ ++ D
Sbjct: 541 RPAEEEEDEEDGQEPGG-LALPPPP--PPPPPPPPRSREQRRNYQPRWRGEYLMDYD 594
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 35.0 bits (79), Expect = 0.086
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 267 PRPGSPSAL-LPGPGRPPPPPTKPPETEAQRGPCLQWLSEWTLEPDS 312
P P S S L G PPPPP++PP Q P S+ T P S
Sbjct: 966 PHPSSQSGPPLHHSGAPPPPPSQPPRQPPQAAPSSHPHSDLTFNPSS 1012
>gi|122937289 kinesin family member 18B [Homo sapiens]
Length = 855
Score = 35.0 bits (79), Expect = 0.086
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 233 SLDACWSPH-TLLQSLDQLVQALR---------ATPDPDPEDRGPRPGSPSALLPGPGRP 282
SLD S + T+ Q L V ALR P P P+ G P LP P
Sbjct: 361 SLDCHISQYATICQQLQAEVAALRKKLQVYEGGGQPPPQDLPGSPKSGPPPEHLPSSPLP 420
Query: 283 PPPPTKPPETEAQRGP 298
P PP++P E GP
Sbjct: 421 PHPPSQPCTPELPAGP 436
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 34.7 bits (78), Expect = 0.11
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 239 SPHTLLQSLDQLVQALRATP-DPDPEDRGPRPGSPSALLPGPGRPPPP 285
SP L QS + L+ R+ PDP R S S LL GPG PP P
Sbjct: 417 SPEALRQSREHLLSPPRSPALPPDPTARASLAASHSNLLLGPGGPPTP 464
>gi|7662386 NLR family, pyrin domain containing 1 isoform 2 [Homo
sapiens]
Length = 1429
Score = 34.7 bits (78), Expect = 0.11
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 246 SLDQLVQALRATPDPD-PEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCLQW 302
S L QAL ++PD + P P + +A+L G PP P P E EA P QW
Sbjct: 152 SASLLYQALPSSPDHESPSQESPNAPTSTAVLGSWGSPPQPSLAPREQEA---PGTQW 206
>gi|14719835 NLR family, pyrin domain containing 1 isoform 4 [Homo
sapiens]
Length = 1399
Score = 34.7 bits (78), Expect = 0.11
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 246 SLDQLVQALRATPDPD-PEDRGPRPGSPSALLPGPGRPPPPPTKPPETEAQRGPCLQW 302
S L QAL ++PD + P P + +A+L G PP P P E EA P QW
Sbjct: 152 SASLLYQALPSSPDHESPSQESPNAPTSTAVLGSWGSPPQPSLAPREQEA---PGTQW 206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,166,241
Number of Sequences: 37866
Number of extensions: 988931
Number of successful extensions: 14372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 413
Number of HSP's that attempted gapping in prelim test: 9635
Number of HSP's gapped (non-prelim): 3798
length of query: 312
length of database: 18,247,518
effective HSP length: 102
effective length of query: 210
effective length of database: 14,385,186
effective search space: 3020889060
effective search space used: 3020889060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.