Guide to the Human Genome
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Name: LOC729774 Sequence: fasta or formatted (202aa) NCBI GI: 169212923
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {181aa} PREDICTED: hypothetical protein
alt prot {172aa} PREDICTED: hypothetical protein, partial
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         17           2
 C cysteine            1.5          3           1
 D aspartate           3.0          6           1
 E glutamate           8.4         17           2
 F phenylalanine       2.0          4           1
 G glycine             5.0         10           2
 H histidine           2.5          5           1
 I isoleucine          5.9         12           2
 K lysine              5.4         11           2
 L leucine            13.9         28           2
 M methionine          2.5          5           1
 N asparagine          3.0          6           2
 P proline             5.4         11           2
 Q glutamine           6.4         13           2
 R arginine           10.4         21           4
 S serine              6.9         14           2
 T threonine           4.0          8           1
 V valine              4.5          9           3
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729774             0.873   PREDICTED: hypothetical protein 
LOC729774             0.829   PREDICTED: hypothetical protein, partial 
LOC729535             0.778   PREDICTED: hypothetical protein 
LOC729535             0.778   PREDICTED: hypothetical protein 
LOC729535             0.778   PREDICTED: hypothetical protein 
C21orf70              0.718   hypothetical protein LOC85395 
CEP170                0.041   centrosomal protein 170kDa isoform beta 
CEP170                0.041   centrosomal protein 170kDa isoform alpha 
CEP170                0.041   centrosomal protein 170kDa isoform gamma 
NR1H3                 0.022   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.022   nuclear receptor subfamily 1, group H, member 3 iso...
TCHH                  0.022   trichohyalin 
STAT6                 0.019   signal transducer and activator of transcription 6 [...
MCM3AP                0.016   minichromosome maintenance complex component 3 assoc...
GIGYF2                0.014   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.014   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.014   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.014   GRB10 interacting GYF protein 2 isoform b 
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.014   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
INCENP                0.014   inner centromere protein antigens 135/155kDa isofor...
SLC2A1                0.014   solute carrier family 2 (facilitated glucose transp...
RELT                  0.014   RELT tumor necrosis factor receptor precursor 
RELT                  0.014   RELT tumor necrosis factor receptor precursor 
INCENP                0.014   inner centromere protein antigens 135/155kDa isofor...
ZKSCAN5               0.014   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.014   zinc finger with KRAB and SCAN domains 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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