Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC729774 Sequence: fasta or formatted (172aa) NCBI GI: 239752538
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Other entries for this name:
alt prot {181aa} PREDICTED: hypothetical protein
alt prot {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         16           2
 C cysteine            1.2          2           1
 D aspartate           2.3          4           1
 E glutamate           9.3         16           2
 F phenylalanine       1.7          3           1
 G glycine             4.7          8           2
 H histidine           1.7          3           1
 I isoleucine          4.7          8           1
 K lysine              6.4         11           2
 L leucine            12.8         22           2
 M methionine          1.7          3           1
 N asparagine          1.7          3           1
 P proline             5.2          9           2
 Q glutamine           7.6         13           2
 R arginine           12.2         21           4
 S serine              7.0         12           2
 T threonine           4.7          8           1
 V valine              4.7          8           3
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC729774             1.000   PREDICTED: hypothetical protein 
LOC729774             0.994   PREDICTED: hypothetical protein 
LOC729535             0.919   PREDICTED: hypothetical protein 
LOC729535             0.919   PREDICTED: hypothetical protein 
LOC729535             0.919   PREDICTED: hypothetical protein 
C21orf70              0.867   hypothetical protein LOC85395 
CEP170                0.049   centrosomal protein 170kDa isoform beta 
CEP170                0.049   centrosomal protein 170kDa isoform alpha 
CEP170                0.049   centrosomal protein 170kDa isoform gamma 
NR1H3                 0.029   nuclear receptor subfamily 1, group H, member 3 iso...
NR1H3                 0.029   nuclear receptor subfamily 1, group H, member 3 iso...
TCHH                  0.026   trichohyalin 
CCDC157               0.026   coiled-coil domain containing 157 
MCM3AP                0.023   minichromosome maintenance complex component 3 assoc...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.019   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
INCENP                0.019   inner centromere protein antigens 135/155kDa isofor...
GIGYF2                0.016   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.016   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.016   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.016   GRB10 interacting GYF protein 2 isoform b 
INCENP                0.016   inner centromere protein antigens 135/155kDa isofor...
SLC2A1                0.016   solute carrier family 2 (facilitated glucose transp...
MLLT4                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithora...
STAT6                 0.016   signal transducer and activator of transcription 6 [...
CALD1                 0.016   caldesmon 1 isoform 1 
VPS72                 0.016   transcription factor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press