Guide to the Human Genome
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Name: OLFML1 Sequence: fasta or formatted (402aa) NCBI GI: 38348264
Description:

olfactomedin-like 1

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         26           2
 C cysteine            2.0          8           1
 D aspartate           4.0         16           1
 E glutamate           6.5         26           3
 F phenylalanine       3.2         13           2
 G glycine             6.0         24           2
 H histidine           3.0         12           1
 I isoleucine          6.0         24           2
 K lysine              6.0         24           2
 L leucine            10.7         43           2
 M methionine          3.2         13           2
 N asparagine          4.0         16           2
 P proline             4.7         19           3
 Q glutamine           5.5         22           1
 R arginine            5.5         22           1
 S serine              6.0         24           1
 T threonine           5.7         23           1
 V valine              5.5         22           2
 W tryptophan          1.5          6           1
 Y tyrosine            4.7         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactomedin-like 1 
OLFML3                0.269   olfactomedin-like 3 
OLFM1                 0.132   olfactomedin related ER localized protein isoform 1 ...
OLFM2                 0.128   olfactomedin 2 
OLFML2A               0.118   olfactomedin-like 2A 
MYOC                  0.116   myocilin 
LPHN2                 0.116   latrophilin 2 precursor 
LPHN3                 0.116   latrophilin 3 precursor 
LPHN1                 0.113   latrophilin 1 isoform 1 precursor 
LPHN1                 0.113   latrophilin 1 isoform 2 precursor 
OLFML2B               0.113   olfactomedin-like 2B 
OLFM3                 0.112   olfactomedin 3 
OLFM4                 0.077   olfactomedin 4 precursor 
GLDN                  0.074   gliomedin 
MYOM1                 0.010   myomesin 1 isoform b 
MYOM1                 0.010   myomesin 1 isoform a 
TUBGCP6               0.009   tubulin, gamma complex associated protein 6 
SUDS3                 0.008   suppressor of defective silencing 3 
ATP13A5               0.008   ATPase type 13A5 
ABCA5                 0.006   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.006   ATP-binding cassette, sub-family A , member 5 
UACA                  0.006   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.006   uveal autoantigen with coiled-coil domains and ankyr...
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.006   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CDC42BPB              0.006   CDC42-binding protein kinase beta 
RNF38                 0.006   ring finger protein 38 isoform 1 
TTC25                 0.006   tetratricopeptide repeat domain 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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