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Search of human proteins with 17105394
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17105394 ribosomal protein L23a [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17105394 ribosomal protein L23a [Homo sapiens] 309 7e-85
gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo ... 135 2e-32
gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens] 118 2e-27
gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens] 118 2e-27
gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo ... 118 2e-27
gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo ... 84 6e-17
gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo ... 84 6e-17
gi|4885381 histone cluster 1, H1b [Homo sapiens] 32 0.29
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 31 0.37
gi|110618253 mitochondrial DNA-directed RNA polymerase precursor... 31 0.49
gi|4885371 H1 histone family, member 0 [Homo sapiens] 31 0.49
gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens] 31 0.49
gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens] 31 0.49
gi|20544168 histone cluster 1, H1t [Homo sapiens] 31 0.49
gi|20149698 l(3)mbt-like 2 [Homo sapiens] 30 0.64
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 30 0.64
gi|157426887 dedicator of cytokinesis 6 [Homo sapiens] 30 1.1
gi|7706617 glycerophosphodiester phosphodiesterase 1 [Homo sapiens] 29 1.8
gi|147903302 MAP7 domain containing 3 [Homo sapiens] 29 1.8
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 28 2.4
gi|4885373 histone cluster 1, H1a [Homo sapiens] 28 2.4
gi|91208420 bassoon protein [Homo sapiens] 28 3.2
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 28 3.2
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap... 28 3.2
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 28 3.2
gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] 28 4.1
gi|94536803 transmembrane protein 16K [Homo sapiens] 28 4.1
gi|16579828 zinc finger protein 91 [Homo sapiens] 28 4.1
gi|37595752 lamin B receptor [Homo sapiens] 27 5.4
gi|37595750 lamin B receptor [Homo sapiens] 27 5.4
>gi|17105394 ribosomal protein L23a [Homo sapiens]
Length = 156
Score = 309 bits (791), Expect = 7e-85
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY
Sbjct: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
Query: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID 120
PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID
Sbjct: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID 120
Query: 121 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
Sbjct: 121 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
>gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo
sapiens]
Length = 152
Score = 135 bits (339), Expect = 2e-32
Identities = 68/81 (83%), Positives = 72/81 (88%)
Query: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
YAIIKFPLT ESA+KK E+NNTLVF VDVKA KHQI+QAVKKLYD DVAKV TLI PD E
Sbjct: 64 YAIIKFPLTAESAVKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKE 123
Query: 134 KKAYVRLAPDYDALDVANKIG 154
KKAYVRLAPDYDALDVA K+G
Sbjct: 124 KKAYVRLAPDYDALDVATKLG 144
>gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens]
Length = 133
Score = 118 bits (295), Expect = 2e-27
Identities = 79/156 (50%), Positives = 94/156 (60%), Gaps = 23/156 (14%)
Query: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
MA KAKKEAPAPP+A+AK K L+AKKAVLKGVH RT P P R +
Sbjct: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVH-------RTKPPSHLPIPQRPVIHIWW 53
Query: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID 120
P+ R + E+AMK + NTLVF VDVKANKHQ++QA+K+ +DI
Sbjct: 54 PKTLRHHRGAIG--------TAGEAAMK--TEGNTLVFTVDVKANKHQMEQAMKEFHDIC 103
Query: 121 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
VAKVNT E++ LAPD ALDVANKIGII
Sbjct: 104 VAKVNT------EEEGMCPLAPDDHALDVANKIGII 133
>gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens]
Length = 133
Score = 118 bits (295), Expect = 2e-27
Identities = 79/156 (50%), Positives = 94/156 (60%), Gaps = 23/156 (14%)
Query: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
MA KAKKEAPAPP+A+AK K L+AKKAVLKGVH RT P P R +
Sbjct: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVH-------RTKPPSHLPIPQRPVIHIWW 53
Query: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID 120
P+ R + E+AMK + NTLVF VDVKANKHQ++QA+K+ +DI
Sbjct: 54 PKTLRHHRGAIG--------TAGEAAMK--TEGNTLVFTVDVKANKHQMEQAMKEFHDIC 103
Query: 121 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
VAKVNT E++ LAPD ALDVANKIGII
Sbjct: 104 VAKVNT------EEEGMCPLAPDDHALDVANKIGII 133
>gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo
sapiens]
Length = 133
Score = 118 bits (295), Expect = 2e-27
Identities = 79/156 (50%), Positives = 94/156 (60%), Gaps = 23/156 (14%)
Query: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
MA KAKKEAPAPP+A+AK K L+AKKAVLKGVH RT P P R +
Sbjct: 1 MALKAKKEAPAPPQAKAKVKTLRAKKAVLKGVH-------RTKPPSHLPIPQRPVIHIWW 53
Query: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDID 120
P+ R + E+AMK + NTLVF VDVKANKHQ++QA+K+ +DI
Sbjct: 54 PKTLRHHRGAIG--------TAGEAAMK--TEGNTLVFTVDVKANKHQMEQAMKEFHDIC 103
Query: 121 VAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
VAKVNT E++ LAPD ALDVANKIGII
Sbjct: 104 VAKVNT------EEEGMCPLAPDDHALDVANKIGII 133
>gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo
sapiens]
Length = 87
Score = 83.6 bits (205), Expect = 6e-17
Identities = 48/87 (55%), Positives = 54/87 (62%), Gaps = 17/87 (19%)
Query: 87 MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVR------- 139
MKKIEDNNTLVF VDVKA KHQIKQAVKKLYD DVAKV+ LIRPD ++ +
Sbjct: 1 MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
Query: 140 ----------LAPDYDALDVANKIGII 156
L D+ANKIG+I
Sbjct: 61 WILPTKLGSTLLLTQQNWDIANKIGVI 87
>gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo
sapiens]
Length = 87
Score = 83.6 bits (205), Expect = 6e-17
Identities = 48/87 (55%), Positives = 54/87 (62%), Gaps = 17/87 (19%)
Query: 87 MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVR------- 139
MKKIEDNNTLVF VDVKA KHQIKQAVKKLYD DVAKV+ LIRPD ++ +
Sbjct: 1 MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
Query: 140 ----------LAPDYDALDVANKIGII 156
L D+ANKIG+I
Sbjct: 61 WILPTKLGSTLLLTQQNWDIANKIGVI 87
>gi|4885381 histone cluster 1, H1b [Homo sapiens]
Length = 226
Score = 31.6 bits (70), Expect = 0.29
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 2 APKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKK------KKIRTSPTFRR--PKTLR 53
A KAKK A A PK +AK KA AKKAV K KK KK+ SP + K +
Sbjct: 128 AAKAKKPAGATPK-KAK-KAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAAAKPKK 185
Query: 54 LRRQPKYPRKSAPRRNK 70
+ P P+ P+ K
Sbjct: 186 ATKSPAKPKAVKPKAAK 202
Score = 31.2 bits (69), Expect = 0.37
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 3 PKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPR 62
PKAKK A K A A KAKKA KK +T ++P +++ K P+
Sbjct: 121 PKAKKAGAAKAKKPAGATPKKAKKAA-----GAKKAVKKTPKKAKKPAAAGVKKVAKSPK 175
Query: 63 KS 64
K+
Sbjct: 176 KA 177
Score = 30.4 bits (67), Expect = 0.64
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 3 PKAKKEAPAPPKAEAKAKALKAKKAVLK 30
PKA K A PKA AK KA KAKKA K
Sbjct: 198 PKAAKPKAAKPKA-AKPKAAKAKKAAAK 224
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 31.2 bits (69), Expect = 0.37
Identities = 22/76 (28%), Positives = 30/76 (39%)
Query: 5 AKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKS 64
AKKE P K E K K + KK V K + +KK+ + P + K +K
Sbjct: 661 AKKEDKTPIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKE 720
Query: 65 APRRNKLDHYAIIKFP 80
+ K I K P
Sbjct: 721 VKKEEKEPKKEIKKLP 736
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 3 PKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRR------ 56
PK + + PPK E K + K +K +K KK+I+ P + + L
Sbjct: 696 PKKEVKKETPPK-EVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSEAKKPAA 754
Query: 57 -QPKYPRK 63
+PK P+K
Sbjct: 755 LKPKVPKK 762
>gi|110618253 mitochondrial DNA-directed RNA polymerase precursor
[Homo sapiens]
Length = 1230
Score = 30.8 bits (68), Expect = 0.49
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 3 PKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRL 54
P EAP PP+A A A+KA L+ +H +K R + R RL
Sbjct: 732 PAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRL 783
>gi|4885371 H1 histone family, member 0 [Homo sapiens]
Length = 194
Score = 30.8 bits (68), Expect = 0.49
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 7 KEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRR-QPKYPRKSA 65
K+A P KA +KA K K +K KKK T ++PKT++ + + P+K+
Sbjct: 121 KKASKPKKAASKAPTKKPKATPVKKA---KKKLAATPKKAKKPKTVKAKPVKASKPKKAK 177
Query: 66 PRRNK 70
P + K
Sbjct: 178 PVKPK 182
>gi|187608809 hypothetical protein LOC23240 isoform 2 [Homo sapiens]
Length = 1609
Score = 30.8 bits (68), Expect = 0.49
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
M PK + AE K + L K K +H R SP + +P + R+
Sbjct: 1083 MFPKETDIKTSENTAEFKERELCPLKTSKKLPENHLP---RNSPQYHQPDLPEISRKNNG 1139
Query: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
+ P +N++DH +K T S+ KKI
Sbjct: 1140 NNQQVPVKNEVDHCENLKKVDTKPSSEKKI 1169
>gi|196114949 hypothetical protein LOC23240 isoform 1 [Homo sapiens]
Length = 1610
Score = 30.8 bits (68), Expect = 0.49
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 1 MAPKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKY 60
M PK + AE K + L K K +H R SP + +P + R+
Sbjct: 1084 MFPKETDIKTSENTAEFKERELCPLKTSKKLPENHLP---RNSPQYHQPDLPEISRKNNG 1140
Query: 61 PRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
+ P +N++DH +K T S+ KKI
Sbjct: 1141 NNQQVPVKNEVDHCENLKKVDTKPSSEKKI 1170
>gi|20544168 histone cluster 1, H1t [Homo sapiens]
Length = 207
Score = 30.8 bits (68), Expect = 0.49
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPR 67
K K+ KAKK+V S K KK+ S + PKT + ++ K PR + P+
Sbjct: 114 KVIPKSTRSKAKKSV-----SAKTKKLVLSRDSKSPKTAKTNKRAKKPRATTPK 162
>gi|20149698 l(3)mbt-like 2 [Homo sapiens]
Length = 705
Score = 30.4 bits (67), Expect = 0.64
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 12 PPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYP 61
PP A A LKAK+A K KK+ R PT RP LR+ K P
Sbjct: 603 PPVAAEPATPLKAKEATKKKKKQFGKKRKRIPPTKTRP----LRQGSKKP 648
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 30.4 bits (67), Expect = 0.64
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 6 KKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRR--PKTLRLRR 56
+K+ P+ P A++K+ A ++KK + V + KK+++ T R +TL LRR
Sbjct: 350 RKKTPSGPSAKSKSSATRSKKRQHR-VKKRRGKKVKSEATTRSRIARTLGLRR 401
>gi|157426887 dedicator of cytokinesis 6 [Homo sapiens]
Length = 2047
Score = 29.6 bits (65), Expect = 1.1
Identities = 20/99 (20%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPR----RNKLDHYAIIKFPLTTESA 86
G ++ R F P+ +R R+ + ++++ R +++++H A+++ L TE++
Sbjct: 1330 GARQEMVRRSRERSPFGNPENVRWRKSVTHWKQTSDRVDKTKDEMEHEALVEGNLATEAS 1389
Query: 87 MKKIEDNNTLVFIVDVKANKHQIKQAVKK--LYDIDVAK 123
+ ++ +V V + + + AV K LY + A+
Sbjct: 1390 LVVLDTLEIIVQTVMLSEARESVLGAVLKVVLYSLGSAQ 1428
>gi|7706617 glycerophosphodiester phosphodiesterase 1 [Homo sapiens]
Length = 331
Score = 28.9 bits (63), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 78 KFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLY 117
K P E+ + + N T+ F DVK + H+ +A+KK+Y
Sbjct: 153 KIPTLREAVAECLNHNLTIFF--DVKGHAHKATEALKKMY 190
>gi|147903302 MAP7 domain containing 3 [Homo sapiens]
Length = 876
Score = 28.9 bits (63), Expect = 1.8
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 2 APKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYP 61
AP+ EAP AE K K + + + + + ++ SP + + PK
Sbjct: 409 APEGSLEAPPKGSAEVAPKE-SVKGSPKESMEASPEAMVKASP--KTSLEASMEASPKAK 465
Query: 62 RKSAPRRNKLDHYAII 77
+ AP+++++D A+I
Sbjct: 466 ARDAPKKSEMDKQALI 481
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 28.5 bits (62), Expect = 2.4
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
Query: 4 KAKKEAPAPPKAEAK--------AKALKAKKAVL---KGVHSHKKKKIRTSPTFRRPKTL 52
KAK+ + PP+ AK ++ALKA+K L K H K+KI + +
Sbjct: 362 KAKESSEKPPEKPAKPERVKTESSEALKAEKRKLIKDKVGKKHLKEKISKLEEKKDKEKK 421
Query: 53 RLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIK 110
++++ K +K R+ + + T+ +KKI + F +V+ ++ K
Sbjct: 422 EIKKERKELKKDEGRKEEKKDAKKEEKRKDTKPELKKISKPDLKPFTPEVRKTLYKAK 479
>gi|4885373 histone cluster 1, H1a [Homo sapiens]
Length = 215
Score = 28.5 bits (62), Expect = 2.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 10 PAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPK-TLRLRRQPKYPRKSAPRR 68
P K K KA A K + K + KK ++T ++P T + + PK P+ P++
Sbjct: 121 PGASKVATKTKATGASKKLKKATGA-SKKSVKTPKKAKKPAATRKSSKNPKKPKTVKPKK 179
Score = 27.7 bits (60), Expect = 4.1
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 5 AKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFR---RPKTLRLR-RQPK- 59
+KK P KA+ A K+ K K + K KK+ SP +PK + R +PK
Sbjct: 146 SKKSVKTPKKAKKPAATRKSSKNPKKP-KTVKPKKVAKSPAKAKAVKPKAAKARVTKPKT 204
Query: 60 -YPRKSAPRR 68
P+K+AP++
Sbjct: 205 AKPKKAAPKK 214
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 28.1 bits (61), Expect = 3.2
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 2 APKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYP 61
+P + K +P P KA +AK L+A + K S ++KK R PT P PK P
Sbjct: 573 SPLSTKASPLPSKASPQAKPLRASEP-SKTPSSVQEKKTRV-PTKAEP-------MPKPP 623
Query: 62 RKSAP 66
++ P
Sbjct: 624 PETTP 628
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 28.1 bits (61), Expect = 3.2
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 6 KKEAPAPPKAEAKAKAL---KAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPR 62
KKEAP P E K A+ K K K + KKK+ T P P + ++ K
Sbjct: 866 KKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPT-PEKEAPAKVEVKEDAKPKE 924
Query: 63 KSAPRRNKLD 72
K+ + + D
Sbjct: 925 KTEVAKKEPD 934
>gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
Length = 348
Score = 28.1 bits (61), Expect = 3.2
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 8 EAPAPPKAEAKAKALKAKKAVLKGVH-SHKKKKIRTSPTFRR---PKTLRLRRQPKYPRK 63
++P PPK E + KAKK KG+ S K + SP ++ PKT R K
Sbjct: 80 DSPGPPKGEKGEEREKAKKKE-KGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSAS 138
Query: 64 SAPRRNKLD 72
S+P+R ++
Sbjct: 139 SSPKRPSVE 147
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.1 bits (61), Expect = 3.2
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 2 APKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYP 61
A +AK+ AP PPK + + + ++ KKKK R RR ++ RR+ K
Sbjct: 157 AREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRG----RRSESSSPRRERKKS 212
Query: 62 RKSAPRRNK 70
K R++
Sbjct: 213 SKKKKHRSE 221
>gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
Length = 601
Score = 27.7 bits (60), Expect = 4.1
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 6 KKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSA 65
++E A + K LK + G +HKKK+ +S + L K +KS+
Sbjct: 43 EEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSS 102
Query: 66 PRR--NKLDHYAIIKFPLTTESAMKK 89
P+ +D I PL S K
Sbjct: 103 PQSTDTAMDLLKAITSPLAAGSKPSK 128
>gi|94536803 transmembrane protein 16K [Homo sapiens]
Length = 660
Score = 27.7 bits (60), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 60 YPRKSAPRRNKLDHYAIIKFPLTTESAMKKIED 92
YP KS RR I FPL A+KK+ED
Sbjct: 152 YPGKSLLRRLLTSGIVIQVFPLHDSEALKKLED 184
>gi|16579828 zinc finger protein 91 [Homo sapiens]
Length = 570
Score = 27.7 bits (60), Expect = 4.1
Identities = 18/68 (26%), Positives = 26/68 (38%)
Query: 3 PKAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPR 62
P ++E P P + K K K KK + V K++ P R RR+
Sbjct: 237 PHLERETPKPRRKSGKVKEEKEKKEIKVEVEVEVKEEENEIREDEEPPRKRGRRRKDDKS 296
Query: 63 KSAPRRNK 70
P+R K
Sbjct: 297 PRLPKRRK 304
>gi|37595752 lamin B receptor [Homo sapiens]
Length = 615
Score = 27.3 bits (59), Expect = 5.4
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 22 LKAKKAVLKGVHSHKKKK---IRTSPTFRRPKTLRLR-RQPKYPRKSAPRRNKLDHYAII 77
L+ K+ +K + S +++K +SP+ RR R R R P P KSA R H A I
Sbjct: 47 LELKENDIKPLTSFRQRKGGSTSSSPSRRRGSRSRSRSRSPGRPPKSARRSASASHQADI 106
Query: 78 K 78
K
Sbjct: 107 K 107
>gi|37595750 lamin B receptor [Homo sapiens]
Length = 615
Score = 27.3 bits (59), Expect = 5.4
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 22 LKAKKAVLKGVHSHKKKK---IRTSPTFRRPKTLRLR-RQPKYPRKSAPRRNKLDHYAII 77
L+ K+ +K + S +++K +SP+ RR R R R P P KSA R H A I
Sbjct: 47 LELKENDIKPLTSFRQRKGGSTSSSPSRRRGSRSRSRSRSPGRPPKSARRSASASHQADI 106
Query: 78 K 78
K
Sbjct: 107 K 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,611,439
Number of Sequences: 37866
Number of extensions: 224008
Number of successful extensions: 1120
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 96
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.